AT2G07718

cytochrome c biosynthesis ccmC-like mitochondrial

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0017525
Physical Location & Seq
Forward (+)
3424685 .. 3430483
5799 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G07718.1

Sequence Viewer

Length: 942 bp
ATGACTATAAGGAACCAACGGTTCTCTCTTCTTAAACAACCTATATCCTCCACACTTAATCAGCATTTAGTAGATTATCCAACCCCGAGCAATCTTAGTTATTGGTGGGGGTTCGGTCCGTTAGCTGGTACCATGATACTTTCTGTTTTGTCGAGCCCTGCTTTGGTCTCTGGTTTGATGGTTGCACGTGCTAAAAATCTGGTACATTCCGTTTTGTTTCCCATCCCTATCTTTTTTTCTATCAATCAACTTTTCCATTACTTTTGTAGGCTTCCTATTATAAAGCACCTGGCAACAAAATGCCAACTCCTTCTTTTTTTGATTTCTCACTTTCTGCTTTTGCTGGTTCTTACCAAATTGGTACTTGATCTGGGCGGCTATCTCTTTATGGACGACCTGAGTCGTGCCCTTTCTCAATTCGTCCCCGGTTTTTCCGGGGGATTGGGAGGGGGTTCTAATACGCCGCCCAACCCCTCAGGGGATTTTTTTCTCTCTTCTTATCAAACTTCAGACCCGGACTATCACGATCAGCGGAGGGGTGATTCCTACTTTTCCTCCGCGCCCGGAGTACAGGAAACCCACCGGCACGCGTCGGGAAGTTCCACAAACCTTCACTTGAACCTAAACGACCAAAGCCAAGATCCCATTTTTTTAGAGGTTGAGCGCCTAAGCTTGAAATGCGATAAAGTGAAAGAAAAAACGATATTAAAGACCCAGTCTTTATTGCTAGAAAGAGGTTACCATATTCCGGATGAACGGGATATAGAACGAGCAATAAATGTTGTGATGACTGAACATGAAACGATCGATATAGATCGGCGTAGGAAACGGTTCTACTACCTTTACTCGTGTTTAGGAAAAACCGGAAACAAGTTTTGGATGGAGCTACTGGAAACGCTGGCTGACTACAATATAAATATAAAAAGCGATTCCGACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_C_asm

Protein Analysis

313

Amino Acids

35.54

Weight (kDa)

7.17

Isoelectric Point (pI)

42.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07681 AT2G07718 AT2G07773 ATMG00270 ATMG00590 ATMG00890 ATMG00910
fragaria_vesca FvH4_2g28560
pyrus_communis pycom12401g00050
rosa_chinensis RchiOBHm_MTg0498991
rosa_laevigata RLG00000000420
rosa_samantha Rh1BG018400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 281
Acc65I GGTACC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 128
AccII CGCG 2 cut(s) 560, 590
AccIII TCCGGA 1 cut(s) 748
AciI CCGC 4 cut(s) 375, 464, 532, 558
AclWI GGATC 1 cut(s) 635
AcuI CTGAAG 1 cut(s) 492
AcvI CACGTG 1 cut(s) 188
AfaI GTAC 4 cut(s) 130, 204, 363, 570
AfiI CCNNNNNNNGG 4 cut(s) 125, 163, 478, 748
AflIII ACRYGT 1 cut(s) 588
AgsI TTSAA 2 cut(s) 619, 676
AjnI CCWGG 1 cut(s) 288
AjuI GAANNNNNNNTTGG 2 cut(s) 859, 891
AluBI AGCT 3 cut(s) 125, 672, 886
AluI AGCT 3 cut(s) 125, 672, 886
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 1 cut(s) 635
Ama87I CYCGRG 1 cut(s) 85
Aor13HI TCCGGA 1 cut(s) 748
Asp700I GAANNNNTTC 1 cut(s) 830
Asp718I GGTACC 1 cut(s) 128
AspLEI GCGC 2 cut(s) 562, 666
AspS9I GGNCC 1 cut(s) 116
AsuC2I CCSGG 4 cut(s) 426, 436, 515, 564
AsuHPI GGTGA 1 cut(s) 551
AvaI CYCGRG 1 cut(s) 85
AvaII GGWCC 1 cut(s) 116
AxyI CCTNAGG 1 cut(s) 475
BaeGI GKGCMC 1 cut(s) 409
BanI GGYRCC 1 cut(s) 128
BanII GRGCYC 1 cut(s) 158
BauI CACGAG 1 cut(s) 847
BbrPI CACGTG 1 cut(s) 188
BccI CCATC 3 cut(s) 172, 230, 874
BciT130I CCWGG 1 cut(s) 290
BcnI CCSGG 4 cut(s) 426, 436, 515, 564
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 1 cut(s) 728
BfoI RGCGCY 1 cut(s) 667
BisI GCNGC 2 cut(s) 376, 464
BlsI GCNGC 2 cut(s) 377, 465
Bme1390I CCNGG 5 cut(s) 290, 426, 436, 515, 564
Bme18I GGWCC 1 cut(s) 116
BmeT110I CYCGRG 1 cut(s) 85
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 2 cut(s) 14, 130
BmrFI CCNGG 5 cut(s) 290, 426, 436, 515, 564
BmrI ACTGGG 1 cut(s) 709
BmuI ACTGGG 1 cut(s) 709
BoxI GACNNNNGTC 1 cut(s) 399
Bpu10I CCTNAGC 1 cut(s) 668
BpuMI CCSGG 4 cut(s) 426, 436, 515, 564
Bsa29I ATCGAT 1 cut(s) 807
BsaAI YACGTR 1 cut(s) 188
BsaBI GATNNNNATC 1 cut(s) 813
BsaI GGTCTC 1 cut(s) 172
BsaJI CCNNGG 2 cut(s) 424, 435
BsaWI WCCGGW 2 cut(s) 748, 863
BsaXI ACNNNNNCTCC 2 cut(s) 539, 569
Bsc4I CCNNNNNNNGG 4 cut(s) 125, 163, 478, 748
Bse118I RCCGGY 1 cut(s) 582
Bse1I ACTGG 2 cut(s) 715, 894
Bse21I CCTNAGG 1 cut(s) 475
Bse8I GATNNNNATC 1 cut(s) 813
BseAI TCCGGA 1 cut(s) 748
BseBI CCWGG 1 cut(s) 290
BseCI ATCGAT 1 cut(s) 807
BseDI CCNNGG 2 cut(s) 424, 435
BseGI GGATG 3 cut(s) 222, 757, 885
BseJI GATNNNNATC 1 cut(s) 813
BseLI CCNNNNNNNGG 4 cut(s) 125, 163, 478, 748
BseMII CTCAG 2 cut(s) 389, 489
BseNI ACTGG 2 cut(s) 715, 894
BseSI GKGCMC 1 cut(s) 409
Bsh1236I CGCG 2 cut(s) 560, 590
Bsh1285I CGRYCG 1 cut(s) 807
BshNI GGYRCC 1 cut(s) 128
BshVI ATCGAT 1 cut(s) 807
BsiEI CGRYCG 1 cut(s) 807
BsiHKCI CYCGRG 1 cut(s) 85
BsiSI CCGG 7 cut(s) 426, 435, 515, 564, 583, 749, 864
BslFI GGGAC 1 cut(s) 407
BslI CCNNNNNNNGG 4 cut(s) 125, 163, 478, 748
BsmAI GTCTC 1 cut(s) 172
BsmFI GGGAC 1 cut(s) 407
Bso31I GGTCTC 1 cut(s) 172
BsoBI CYCGRG 1 cut(s) 85
Bsp1286I GDGCHC 2 cut(s) 158, 409
Bsp13I TCCGGA 1 cut(s) 748
Bsp143I GATC 5 cut(s) 367, 526, 640, 804, 814
BspACI CCGC 4 cut(s) 375, 464, 532, 558
BspCNI CTCAG 2 cut(s) 390, 488
BspDI ATCGAT 1 cut(s) 807
BspEI TCCGGA 1 cut(s) 748
BspFNI CGCG 2 cut(s) 560, 590
BspLI GGNNCC 2 cut(s) 14, 130
BspPI GGATC 1 cut(s) 635
BspT107I GGYRCC 1 cut(s) 128
BspTNI GGTCTC 1 cut(s) 172
BsrFI RCCGGY 1 cut(s) 582
BsrI ACTGG 2 cut(s) 715, 894
BssAI RCCGGY 1 cut(s) 582
BssECI CCNNGG 2 cut(s) 424, 435
BssMI GATC 5 cut(s) 367, 526, 640, 804, 814
BssSI CACGAG 1 cut(s) 847
Bst2BI CACGAG 1 cut(s) 847
Bst2UI CCWGG 1 cut(s) 290
Bst4CI ACNGT 2 cut(s) 21, 831
Bst6I CTCTTC 2 cut(s) 33, 499
BstBAI YACGTR 1 cut(s) 188
BstC8I GCNNGC 2 cut(s) 588, 900
BstDEI CTNAG 4 cut(s) 95, 398, 475, 668
BstEII GGTNACC 1 cut(s) 737
BstF5I GGATG 3 cut(s) 222, 757, 885
BstFNI CGCG 2 cut(s) 560, 590
BstH2I RGCGCY 1 cut(s) 667
BstHHI GCGC 2 cut(s) 562, 666
BstKTI GATC 5 cut(s) 370, 529, 643, 807, 817
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 5 cut(s) 367, 526, 640, 804, 814
BstMCI CGRYCG 1 cut(s) 807
BstMWI GCNNNNNNNGC 1 cut(s) 678
BstNI CCWGG 1 cut(s) 290
BstPAI GACNNNNGTC 1 cut(s) 399
BstPI GGTNACC 1 cut(s) 737
BstSCI CCNGG 5 cut(s) 288, 424, 434, 513, 562
BstSLI GKGCMC 1 cut(s) 409
BstUI CGCG 2 cut(s) 560, 590
BstX2I RGATCY 1 cut(s) 640
BstYI RGATCY 1 cut(s) 640
Bsu15I ATCGAT 1 cut(s) 807
Bsu36I CCTNAGG 1 cut(s) 475
BsuTUI ATCGAT 1 cut(s) 807
BtsCI GGATG 3 cut(s) 222, 757, 885
Cac8I GCNNGC 2 cut(s) 588, 900
CfoI GCGC 2 cut(s) 562, 666
Cfr10I RCCGGY 1 cut(s) 582
Cfr13I GGNCC 1 cut(s) 116
ClaI ATCGAT 1 cut(s) 807
CpoI CGGWCCG 1 cut(s) 116
CseI GACGC 1 cut(s) 579
Csp6I GTAC 4 cut(s) 129, 203, 362, 569
CspI CGGWCCG 1 cut(s) 116
CviAII CATG 2 cut(s) 133, 797
CviJI RGCY 8 cut(s) 125, 156, 271, 378, 636, 672, 886, 902
CviKI_1 RGCY 8 cut(s) 125, 156, 271, 378, 636, 672, 886, 902
CviQI GTAC 4 cut(s) 129, 203, 362, 569
DdeI CTNAG 4 cut(s) 95, 398, 475, 668
DpnI GATC 5 cut(s) 369, 528, 642, 806, 816
DpnII GATC 5 cut(s) 367, 526, 640, 804, 814
Eam1104I CTCTTC 2 cut(s) 33, 499
EarI CTCTTC 2 cut(s) 33, 499
Eco24I GRGCYC 1 cut(s) 158
Eco31I GGTCTC 1 cut(s) 172
Eco47I GGWCC 1 cut(s) 116
Eco57I CTGAAG 1 cut(s) 492
Eco72I CACGTG 1 cut(s) 188
Eco81I CCTNAGG 1 cut(s) 475
Eco88I CYCGRG 1 cut(s) 85
Eco91I GGTNACC 1 cut(s) 737
EcoO65I GGTNACC 1 cut(s) 737
EcoRII CCWGG 1 cut(s) 288
EcoT38I GRGCYC 1 cut(s) 158
FaeI CATG 2 cut(s) 136, 800
FaqI GGGAC 1 cut(s) 407
FatI CATG 2 cut(s) 132, 796
Fnu4HI GCNGC 2 cut(s) 376, 464
FokI GGATG 3 cut(s) 209, 764, 892
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 2 cut(s) 376, 464
FspBI CTAG 1 cut(s) 728
GlaI GCGC 2 cut(s) 561, 665
GluI GCNGC 2 cut(s) 376, 464
HaeII RGCGCY 1 cut(s) 667
HapII CCGG 7 cut(s) 426, 435, 515, 564, 583, 749, 864
HgaI GACGC 1 cut(s) 579
HhaI GCGC 2 cut(s) 562, 666
Hin1II CATG 2 cut(s) 136, 800
Hin6I GCGC 2 cut(s) 560, 664
HinP1I GCGC 2 cut(s) 560, 664
HindIII AAGCTT 1 cut(s) 670
HinfI GANTC 3 cut(s) 400, 542, 929
HpaII CCGG 7 cut(s) 426, 435, 515, 564, 583, 749, 864
HphI GGTGA 1 cut(s) 551
Hpy188I TCNGA 2 cut(s) 511, 934
Hpy188III TCNNGA 3 cut(s) 524, 594, 749
Hpy99I CGWCG 1 cut(s) 595
HpyAV CCTTC 2 cut(s) 320, 620
HpyCH4III ACNGT 2 cut(s) 21, 831
HpyCH4IV ACGT 1 cut(s) 187
HpyCH4V TGCA 1 cut(s) 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 678
HpyF3I CTNAG 4 cut(s) 95, 398, 475, 668
HpySE526I ACGT 1 cut(s) 187
Hsp92II CATG 2 cut(s) 136, 800
HspAI GCGC 2 cut(s) 560, 664
Kpn2I TCCGGA 1 cut(s) 748
KpnI GGTACC 1 cut(s) 132
Kzo9I GATC 5 cut(s) 367, 526, 640, 804, 814
LmnI GCTCC 1 cut(s) 883
MaeI CTAG 1 cut(s) 728
MaeII ACGT 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 737
MalI GATC 5 cut(s) 369, 528, 642, 806, 816
MboI GATC 5 cut(s) 367, 526, 640, 804, 814
MboII GAAGA 2 cut(s) 20, 486
MflI RGATCY 1 cut(s) 640
MhlI GDGCHC 2 cut(s) 158, 409
MluCI AATT 2 cut(s) 356, 416
MluI ACGCGT 1 cut(s) 588
MlyI GAGTC 1 cut(s) 409
MmeI TCCRAC 1 cut(s) 104
MnlI CCTC 7 cut(s) 58, 440, 484, 528, 565, 649, 728
MroI TCCGGA 1 cut(s) 748
MroXI GAANNNNTTC 1 cut(s) 830
MseI TTAA 3 cut(s) 33, 57, 707
MspA1I CMGCKG 1 cut(s) 532
MspI CCGG 7 cut(s) 426, 435, 515, 564, 583, 749, 864
MspR9I CCNGG 5 cut(s) 290, 426, 436, 515, 564
MvaI CCWGG 1 cut(s) 290
MvnI CGCG 2 cut(s) 560, 590
MwoI GCNNNNNNNGC 1 cut(s) 678
NciI CCSGG 4 cut(s) 426, 436, 515, 564
NdeII GATC 5 cut(s) 367, 526, 640, 804, 814
NlaIII CATG 2 cut(s) 136, 800
NlaIV GGNNCC 2 cut(s) 14, 130
PdmI GAANNNNTTC 1 cut(s) 830
PfeI GAWTC 2 cut(s) 542, 929
PflFI GACNNNGTC 1 cut(s) 715
PkrI GCNGC 2 cut(s) 377, 465
Ple19I CGATCG 1 cut(s) 807
PleI GAGTC 1 cut(s) 408
PmaCI CACGTG 1 cut(s) 188
PmlI CACGTG 1 cut(s) 188
PpsI GAGTC 1 cut(s) 408
Ppu21I YACGTR 1 cut(s) 188
PshAI GACNNNNGTC 1 cut(s) 399
PsiI TTATAA 1 cut(s) 281
Psp6I CCWGG 1 cut(s) 288
PspCI CACGTG 1 cut(s) 188
PspEI GGTNACC 1 cut(s) 737
PspGI CCWGG 1 cut(s) 288
PspN4I GGNNCC 2 cut(s) 14, 130
PspPI GGNCC 1 cut(s) 116
PsuI RGATCY 1 cut(s) 640
PsyI GACNNNGTC 1 cut(s) 715
PvuI CGATCG 1 cut(s) 807
RsaI GTAC 4 cut(s) 130, 204, 363, 570
RsaNI GTAC 4 cut(s) 129, 203, 362, 569
Rsr2I CGGWCCG 1 cut(s) 116
RsrII CGGWCCG 1 cut(s) 116
SaqAI TTAA 3 cut(s) 33, 57, 707
SatI GCNGC 2 cut(s) 376, 464
Sau3AI GATC 5 cut(s) 367, 526, 640, 804, 814
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 1 cut(s) 409
ScrFI CCNGG 5 cut(s) 290, 426, 436, 515, 564
SduI GDGCHC 2 cut(s) 158, 409
SinI GGWCC 1 cut(s) 116
Sse9I AATT 2 cut(s) 356, 416
SsiI CCGC 4 cut(s) 375, 464, 532, 558
SspMI CTAG 1 cut(s) 728
StyD4I CCNGG 5 cut(s) 288, 424, 434, 513, 562
TaaI ACNGT 2 cut(s) 21, 831
TaiI ACGT 1 cut(s) 190
TaqI TCGA 2 cut(s) 152, 807
TaqII GACCGA 1 cut(s) 104
TasI AATT 2 cut(s) 356, 416
TatI WGTACW 1 cut(s) 568
TauI GCSGC 2 cut(s) 378, 466
TfiI GAWTC 2 cut(s) 542, 929
Tru1I TTAA 3 cut(s) 33, 57, 707
Tru9I TTAA 3 cut(s) 33, 57, 707
TspDTI ATGAA 2 cut(s) 768, 813
TspGWI ACGGA 2 cut(s) 108, 199
Tth111I GACNNNGTC 1 cut(s) 715
VpaK11BI GGWCC 1 cut(s) 116
XmnI GAANNNNTTC 1 cut(s) 830
XspI CTAG 1 cut(s) 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.