FvH4_2g28560

cytochrome c biosynthesis ccmC-like mitochondrial

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017525
Physical Location & Seq
Forward (+)
22347447 .. 22348178
732 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28560.t1

Sequence Viewer

Length: 732 bp
ATGACTCAAATGCCTCGTCTCATGAACTTATTTTCTGTGATCTTTGGTTCCGTGTCTCTGATTCTTGTCTTTTTCGACAATAAGACTATTTTACGGTTCTTATGTCGGATACCCGGGTTTAGGAAGATTCCGACAAGAGTTCAAAGCGTTGTATTTTGTATTGGGAGAGCGCTCTTTTCTCTTCTTCTGGCGAGCGTAGCCGTCAAACTGGGATATGTCTTTATGGAGGACCTATCCCGGGCGGTTGCTCAATTCTATCCGGGGGGAATGGCTGGAGGTCCTGGTACACCTACACCTCCCGGCCCCTCTGAGAATTTTGGCCTTTTTTCGTACCCGCTCGAAGGCGAAAGCTCCCACCAGGGTGAGCGGAGGGGCTCGCCTTCGTTGTCGGCGGAGGTTCCATTACTTTCTGACACCCAGCGCCGCATAGAGTTAGAGAGTGAGTTAGAACACTTAATTGAACATAATGTTTATAAAAAAACTCTTTCTGATACTGAGCGCGAGAACTTGGTAACTTTACAATTAAAGTGCGATCGCGAACTCGAGGATGCTCTCCGTTCCGATGGATTTTCGGACGATAGGATTTTAAATTCTCGCAATGACTGGCGACGTATCGCCTTTACCACGGACTCTAAACCCCAACCTATAAGCTTCACAGCAATAAAGAAACAGATGTTGAAATTGTTTGAGCGAATATATTTGCTCTTAAGATATATTAGAATAAACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_C_asm

Protein Analysis

244

Amino Acids

27.65

Weight (kDa)

9.01

Isoelectric Point (pI)

46.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07681 AT2G07718 AT2G07773 ATMG00270 ATMG00590 ATMG00890 ATMG00910
fragaria_vesca FvH4_2g28560
pyrus_communis pycom12401g00050
rosa_chinensis RchiOBHm_MTg0498991
rosa_laevigata RLG00000000420
rosa_samantha Rh1BG018400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 474
AccBSI CCGCTC 2 cut(s) 337, 367
AccII CGCG 2 cut(s) 501, 537
AciI CCGC 5 cut(s) 242, 335, 367, 392, 424
AcsI RAATTY 2 cut(s) 313, 589
AfaI GTAC 2 cut(s) 286, 332
AfeI AGCGCT 1 cut(s) 171
AfiI CCNNNNNNNGG 3 cut(s) 120, 238, 341
AflII CTTAAG 1 cut(s) 706
AgsI TTSAA 3 cut(s) 143, 461, 679
AjnI CCWGG 2 cut(s) 280, 357
AleI CACNNNNGTG 1 cut(s) 360
AluBI AGCT 2 cut(s) 351, 651
AluI AGCT 2 cut(s) 351, 651
Alw26I GTCTC 2 cut(s) 23, 60
Ama87I CYCGRG 3 cut(s) 113, 237, 542
Aor51HI AGCGCT 1 cut(s) 171
AoxI GGCC 2 cut(s) 301, 319
ApoI RAATTY 2 cut(s) 313, 589
ArsI GACNNNNNNTTYG 1 cut(s) 33
AsiSI GCGATCGC 1 cut(s) 535
AspLEI GCGC 3 cut(s) 172, 423, 501
AspS9I GGNCC 3 cut(s) 229, 278, 302
AsuC2I CCSGG 6 cut(s) 114, 115, 238, 239, 261, 300
AsuHPI GGTGA 1 cut(s) 374
AvaI CYCGRG 3 cut(s) 113, 237, 542
AvaII GGWCC 2 cut(s) 229, 278
BaeI ACNNNNGTAYC 2 cut(s) 101, 134
BanII GRGCYC 1 cut(s) 377
BccI CCATC 1 cut(s) 557
BceAI ACGGC 1 cut(s) 185
BciT130I CCWGG 2 cut(s) 282, 359
BciVI GTATCC 1 cut(s) 102
BcnI CCSGG 6 cut(s) 114, 115, 238, 239, 261, 300
BcoDI GTCTC 2 cut(s) 23, 60
BfoI RGCGCY 2 cut(s) 173, 424
BfrI CTTAAG 1 cut(s) 706
BfuI GTATCC 1 cut(s) 102
BisI GCNGC 1 cut(s) 424
BlsI GCNGC 1 cut(s) 425
Bme1390I CCNGG 8 cut(s) 114, 115, 238, 239, 261, 282, 300, 359
Bme18I GGWCC 2 cut(s) 229, 278
BmeT110I CYCGRG 3 cut(s) 113, 237, 542
BmgT120I GGNCC 3 cut(s) 229, 278, 302
BmiI GGNNCC 3 cut(s) 49, 304, 399
BmrFI CCNGG 8 cut(s) 114, 115, 238, 239, 261, 282, 300, 359
BmrI ACTGGG 1 cut(s) 218
BmsI GCATC 1 cut(s) 538
BmuI ACTGGG 1 cut(s) 218
BpmI CTGGAG 1 cut(s) 294
BpuMI CCSGG 6 cut(s) 114, 115, 238, 239, 261, 300
BsaJI CCNNGG 5 cut(s) 113, 237, 260, 358, 624
Bsc4I CCNNNNNNNGG 3 cut(s) 120, 238, 341
Bse1I ACTGG 2 cut(s) 213, 608
Bse3DI GCAATG 1 cut(s) 604
BseBI CCWGG 2 cut(s) 282, 359
BseDI CCNNGG 5 cut(s) 113, 237, 260, 358, 624
BseGI GGATG 1 cut(s) 553
BseLI CCNNNNNNNGG 3 cut(s) 120, 238, 341
BseMI GCAATG 1 cut(s) 604
BseMII CTCAG 2 cut(s) 300, 486
BseNI ACTGG 2 cut(s) 213, 608
BseYI CCCAGC 1 cut(s) 417
Bsh1236I CGCG 2 cut(s) 501, 537
Bsh1285I CGRYCG 1 cut(s) 535
BshFI GGCC 2 cut(s) 303, 321
BsiEI CGRYCG 1 cut(s) 535
BsiHKCI CYCGRG 3 cut(s) 113, 237, 542
BsiSI CCGG 4 cut(s) 114, 238, 260, 300
BslI CCNNNNNNNGG 3 cut(s) 120, 238, 341
BsmAI GTCTC 2 cut(s) 23, 60
BsmBI CGTCTC 1 cut(s) 23
BsnI GGCC 2 cut(s) 303, 321
BsoBI CYCGRG 3 cut(s) 113, 237, 542
Bsp1286I GDGCHC 1 cut(s) 377
Bsp143I GATC 2 cut(s) 39, 532
Bsp68I TCGCGA 1 cut(s) 537
BspACI CCGC 5 cut(s) 242, 335, 367, 392, 424
BspANI GGCC 2 cut(s) 303, 321
BspCNI CTCAG 2 cut(s) 301, 487
BspFNI CGCG 2 cut(s) 501, 537
BspHI TCATGA 1 cut(s) 21
BspLI GGNNCC 3 cut(s) 49, 304, 399
BspTI CTTAAG 1 cut(s) 706
BsrBI CCGCTC 2 cut(s) 337, 367
BsrDI GCAATG 1 cut(s) 604
BsrI ACTGG 2 cut(s) 213, 608
BssECI CCNNGG 5 cut(s) 113, 237, 260, 358, 624
BssMI GATC 2 cut(s) 39, 532
Bst2UI CCWGG 2 cut(s) 282, 359
Bst4CI ACNGT 1 cut(s) 96
Bst6I CTCTTC 1 cut(s) 186
BstAFI CTTAAG 1 cut(s) 706
BstC8I GCNNGC 2 cut(s) 193, 377
BstDEI CTNAG 2 cut(s) 309, 495
BstDSI CCRYGG 1 cut(s) 624
BstF5I GGATG 1 cut(s) 553
BstFNI CGCG 2 cut(s) 501, 537
BstH2I RGCGCY 2 cut(s) 173, 424
BstHHI GCGC 3 cut(s) 172, 423, 501
BstKTI GATC 2 cut(s) 42, 535
BstMAI GTCTC 2 cut(s) 23, 60
BstMBI GATC 2 cut(s) 39, 532
BstMCI CGRYCG 1 cut(s) 535
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNI CCWGG 2 cut(s) 282, 359
BstSCI CCNGG 8 cut(s) 112, 113, 236, 237, 259, 280, 298, 357
BstUI CGCG 2 cut(s) 501, 537
BsuI GTATCC 1 cut(s) 102
BsuRI GGCC 2 cut(s) 303, 321
BtgI CCRYGG 1 cut(s) 624
BtsCI GGATG 1 cut(s) 553
BtuMI TCGCGA 1 cut(s) 537
Cac8I GCNNGC 2 cut(s) 193, 377
CciI TCATGA 1 cut(s) 21
CfoI GCGC 3 cut(s) 172, 423, 501
Cfr13I GGNCC 3 cut(s) 229, 278, 302
Cfr9I CCCGGG 2 cut(s) 113, 237
Csp6I GTAC 2 cut(s) 285, 331
CviAII CATG 1 cut(s) 22
CviJI RGCY 7 cut(s) 200, 272, 303, 321, 351, 375, 651
CviKI_1 RGCY 7 cut(s) 200, 272, 303, 321, 351, 375, 651
CviQI GTAC 2 cut(s) 285, 331
DdeI CTNAG 2 cut(s) 309, 495
DpnI GATC 2 cut(s) 41, 534
DpnII GATC 2 cut(s) 39, 532
DraI TTTAAA 1 cut(s) 588
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
EciI GGCGGA 1 cut(s) 407
Eco24I GRGCYC 1 cut(s) 377
Eco47I GGWCC 2 cut(s) 229, 278
Eco47III AGCGCT 1 cut(s) 171
Eco88I CYCGRG 3 cut(s) 113, 237, 542
EcoO109I RGGNCCY 2 cut(s) 229, 278
EcoRII CCWGG 2 cut(s) 280, 357
EcoT38I GRGCYC 1 cut(s) 377
Esp3I CGTCTC 1 cut(s) 23
FaeI CATG 1 cut(s) 25
FatI CATG 1 cut(s) 21
FauI CCCGC 1 cut(s) 342
Fnu4HI GCNGC 1 cut(s) 424
FokI GGATG 1 cut(s) 560
FriOI GRGCYC 1 cut(s) 377
Fsp4HI GCNGC 1 cut(s) 424
GlaI GCGC 3 cut(s) 171, 422, 500
GluI GCNGC 1 cut(s) 424
GsaI CCCAGC 1 cut(s) 421
GsuI CTGGAG 1 cut(s) 294
HaeII RGCGCY 2 cut(s) 173, 424
HaeIII GGCC 2 cut(s) 303, 321
HapII CCGG 4 cut(s) 114, 238, 260, 300
HhaI GCGC 3 cut(s) 172, 423, 501
Hin1II CATG 1 cut(s) 25
Hin6I GCGC 3 cut(s) 170, 421, 499
HinP1I GCGC 3 cut(s) 170, 421, 499
HindIII AAGCTT 1 cut(s) 649
HinfI GANTC 4 cut(s) 4, 61, 127, 629
HpaII CCGG 4 cut(s) 114, 238, 260, 300
HphI GGTGA 1 cut(s) 374
Hpy166II GTNNAC 1 cut(s) 287
Hpy188I TCNGA 8 cut(s) 60, 108, 132, 310, 412, 490, 562, 574
Hpy188III TCNNGA 2 cut(s) 22, 536
Hpy8I GTNNAC 1 cut(s) 287
Hpy99I CGWCG 1 cut(s) 612
HpyAV CCTTC 2 cut(s) 335, 390
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4IV ACGT 1 cut(s) 610
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 2 cut(s) 309, 495
HpySE526I ACGT 1 cut(s) 610
Hsp92II CATG 1 cut(s) 25
HspAI GCGC 3 cut(s) 170, 421, 499
Kzo9I GATC 2 cut(s) 39, 532
LmnI GCTCC 1 cut(s) 356
LweI GCATC 1 cut(s) 538
MaeII ACGT 1 cut(s) 610
MaeIII GTNAC 1 cut(s) 511
MalI GATC 2 cut(s) 41, 534
MbiI CCGCTC 2 cut(s) 337, 367
MboI GATC 2 cut(s) 39, 532
MboII GAAGA 3 cut(s) 136, 173, 176
MhlI GDGCHC 1 cut(s) 377
MluCI AATT 7 cut(s) 251, 313, 456, 521, 589, 680, 727
MlyI GAGTC 1 cut(s) 623
MmeI TCCRAC 2 cut(s) 86, 155
MnlI CCTC 8 cut(s) 24, 220, 269, 306, 316, 363, 388, 538
MseI TTAA 5 cut(s) 455, 524, 587, 707, 730
MslI CAYNNNNRTG 1 cut(s) 360
MspCI CTTAAG 1 cut(s) 706
MspI CCGG 4 cut(s) 114, 238, 260, 300
MspR9I CCNGG 8 cut(s) 114, 115, 238, 239, 261, 282, 300, 359
MvaI CCWGG 2 cut(s) 282, 359
MvnI CGCG 2 cut(s) 501, 537
MwoI GCNNNNNNNGC 1 cut(s) 197
NciI CCSGG 6 cut(s) 114, 115, 238, 239, 261, 300
NdeII GATC 2 cut(s) 39, 532
NlaIII CATG 1 cut(s) 25
NlaIV GGNNCC 3 cut(s) 49, 304, 399
NruI TCGCGA 1 cut(s) 537
OliI CACNNNNGTG 1 cut(s) 360
PaeR7I CTCGAG 1 cut(s) 542
PagI TCATGA 1 cut(s) 21
PfeI GAWTC 2 cut(s) 61, 127
PkrI GCNGC 1 cut(s) 425
Ple19I CGATCG 1 cut(s) 535
PleI GAGTC 1 cut(s) 623
PpsI GAGTC 1 cut(s) 623
PpuMI RGGWCCY 2 cut(s) 229, 278
PsiI TTATAA 1 cut(s) 474
Psp5II RGGWCCY 2 cut(s) 229, 278
Psp6I CCWGG 2 cut(s) 280, 357
PspFI CCCAGC 1 cut(s) 417
PspGI CCWGG 2 cut(s) 280, 357
PspN4I GGNNCC 3 cut(s) 49, 304, 399
PspPI GGNCC 3 cut(s) 229, 278, 302
PspPPI RGGWCCY 2 cut(s) 229, 278
PspXI VCTCGAGB 1 cut(s) 542
PvuI CGATCG 1 cut(s) 535
RgaI GCGATCGC 1 cut(s) 535
RruI TCGCGA 1 cut(s) 537
RsaI GTAC 2 cut(s) 286, 332
RsaNI GTAC 2 cut(s) 285, 331
RseI CAYNNNNRTG 1 cut(s) 360
SaqAI TTAA 5 cut(s) 455, 524, 587, 707, 730
SatI GCNGC 1 cut(s) 424
Sau3AI GATC 2 cut(s) 39, 532
Sau96I GGNCC 3 cut(s) 229, 278, 302
SchI GAGTC 1 cut(s) 623
ScrFI CCNGG 8 cut(s) 114, 115, 238, 239, 261, 282, 300, 359
SduI GDGCHC 1 cut(s) 377
SetI ASST 9 cut(s) 234, 280, 292, 298, 353, 399, 613, 646, 653
SfaAI GCGATCGC 1 cut(s) 535
SfaNI GCATC 1 cut(s) 538
Sfr274I CTCGAG 1 cut(s) 542
SgfI GCGATCGC 1 cut(s) 535
SinI GGWCC 2 cut(s) 229, 278
SlaI CTCGAG 1 cut(s) 542
SmaI CCCGGG 2 cut(s) 115, 239
SmiMI CAYNNNNRTG 1 cut(s) 360
SmlI CTYRAG 2 cut(s) 542, 706
SmoI CTYRAG 2 cut(s) 542, 706
Sse9I AATT 7 cut(s) 251, 313, 456, 521, 589, 680, 727
SsiI CCGC 5 cut(s) 242, 335, 367, 392, 424
StyD4I CCNGG 8 cut(s) 112, 113, 236, 237, 259, 280, 298, 357
TaaI ACNGT 1 cut(s) 96
TaiI ACGT 1 cut(s) 613
TaqI TCGA 3 cut(s) 75, 339, 543
TasI AATT 7 cut(s) 251, 313, 456, 521, 589, 680, 727
TauI GCSGC 1 cut(s) 426
TfiI GAWTC 2 cut(s) 61, 127
Tru1I TTAA 5 cut(s) 455, 524, 587, 707, 730
Tru9I TTAA 5 cut(s) 455, 524, 587, 707, 730
TspDTI ATGAA 1 cut(s) 38
TspGWI ACGGA 3 cut(s) 40, 545, 641
TspMI CCCGGG 2 cut(s) 113, 237
Vha464I CTTAAG 1 cut(s) 706
VpaK11BI GGWCC 2 cut(s) 229, 278
XapI RAATTY 2 cut(s) 313, 589
XhoI CTCGAG 1 cut(s) 542
XmaI CCCGGG 2 cut(s) 113, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.