AT2G07773

cytochrome c biosynthesis ccmC-like mitochondrial

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0017525
Physical Location & Seq
Reverse (-)
3240494 .. 3242263
1770 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G07773.1

Sequence Viewer

Length: 822 bp
ATGCCCACGTTTAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGTACTGAAGTTTTGGTCTTTGGTTTGCTGGTTACACGTATTATCCGTTTTGTACATTCTGTTTTGTTTCCCATCCCAGTCTTTTGCAGCATAAAAGTCCTTTTAGATTCCTTTTGTTCGCTTCCTATTATAAACAAACTTTCCAAAAAATGGCAACTGATTTGGTTTTATGTTATTTCAGTTATTCTCTGTAAATCTTTATTTGCTGTAGGATACTTGTGGATGGACGACTTAAGTCGTGCCATTTCTCAGTTCTACCCGGTGGTATCCGGAGGACTAGGAGGAGGAAATACGCCAATGCCCCCGACAAATCCATCTGAGGGTGGTCTTTTAGAAGGATATTATGCTCATGAGAATGAGCACTCTCACGATCAGCAGAGGGGTTCACCTTTCTGGTCGAAAGAGTACAAGGAAAGTGGCTCAAAACGCCTTTTCTTGAACCTCGAGGTAGAGGATCAAAACACAGATACCATCGGGGAGCAAGTAAAAGCAGAGAGTGATAAATGCGAAAAAATCAAGGCAAAAATAATAGCAAAAACACATGAACTCTTAGTATCCGAAGGTTACCATATTCCGGATGAACGGGATATAGAACGAGCAATAAATGTTGTGATGACTGAACATGAAATGATCGATATCGATCGGCGTAAGAAAAGATTCTACTATCTTTATTCCCGGTTAGGAAAAAACGGAGACAAGTTTTGGGTGGAGCTACTGGAATTGCTGTCTGACTACGACATAAATAAAAGCGATTCCGACGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_C_asm

Protein Analysis

273

Amino Acids

31.63

Weight (kDa)

6.1

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07681 AT2G07718 AT2G07773 ATMG00270 ATMG00590 ATMG00890 ATMG00910
fragaria_vesca FvH4_2g28560
pyrus_communis pycom12401g00050
rosa_chinensis RchiOBHm_MTg0498991
rosa_laevigata RLG00000000420
rosa_samantha Rh1BG018400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 188
AbsI CCTCGAGG 1 cut(s) 500
AccB7I CCANNNNNTGG 1 cut(s) 207
AccIII TCCGGA 2 cut(s) 326, 631
AclWI GGATC 1 cut(s) 519
AcuI CTGAAG 1 cut(s) 84
AfaI GTAC 3 cut(s) 61, 111, 464
AfiI CCNNNNNNNGG 3 cut(s) 207, 377, 631
AflII CTTAAG 1 cut(s) 289
AflIII ACRYGT 1 cut(s) 92
AgsI TTSAA 1 cut(s) 496
AluBI AGCT 1 cut(s) 769
AluI AGCT 1 cut(s) 769
Alw21I GWGCWC 1 cut(s) 420
Alw26I GTCTC 1 cut(s) 744
AlwI GGATC 1 cut(s) 519
Ama87I CYCGRG 1 cut(s) 500
Aor13HI TCCGGA 2 cut(s) 326, 631
ApeKI GCWGC 1 cut(s) 144
Asp700I GAANNNNTTC 1 cut(s) 713
AspLEI GCGC 1 cut(s) 51
AspS9I GGNCC 1 cut(s) 55
AsuC2I CCSGG 2 cut(s) 317, 733
AsuHPI GGTGA 1 cut(s) 435
AvaI CYCGRG 1 cut(s) 500
AvaII GGWCC 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 420
BbvI GCAGC 1 cut(s) 156
BccI CCATC 4 cut(s) 137, 274, 379, 536
BceAI ACGGC 1 cut(s) 62
BciVI GTATCC 3 cut(s) 263, 334, 622
BcnI CCSGG 2 cut(s) 317, 733
BcoDI GTCTC 1 cut(s) 744
BfaI CTAG 1 cut(s) 335
BfmI CTRYAG 1 cut(s) 264
BfrI CTTAAG 1 cut(s) 289
BfuI GTATCC 3 cut(s) 263, 334, 622
BisI GCNGC 1 cut(s) 145
BlsI GCNGC 1 cut(s) 146
Bme1390I CCNGG 2 cut(s) 317, 733
Bme18I GGWCC 1 cut(s) 55
BmeT110I CYCGRG 1 cut(s) 500
BmgT120I GGNCC 1 cut(s) 55
BmrFI CCNGG 2 cut(s) 317, 733
BmrI ACTGGG 1 cut(s) 128
BmuI ACTGGG 1 cut(s) 128
BoxI GACNNNNGTC 1 cut(s) 291
BpuMI CCSGG 2 cut(s) 317, 733
Bsa29I ATCGAT 2 cut(s) 690, 696
BsaAI YACGTR 1 cut(s) 95
BsaBI GATNNNNATC 2 cut(s) 692, 696
BsaWI WCCGGW 2 cut(s) 326, 631
Bsc4I CCNNNNNNNGG 3 cut(s) 207, 377, 631
Bse1I ACTGG 2 cut(s) 134, 777
Bse8I GATNNNNATC 2 cut(s) 692, 696
BseAI TCCGGA 2 cut(s) 326, 631
BseCI ATCGAT 2 cut(s) 690, 696
BseGI GGATG 3 cut(s) 129, 285, 640
BseJI GATNNNNATC 2 cut(s) 692, 696
BseLI CCNNNNNNNGG 3 cut(s) 207, 377, 631
BseMII CTCAG 2 cut(s) 320, 366
BseNI ACTGG 2 cut(s) 134, 777
BseRI GAGGAG 1 cut(s) 354
BseXI GCAGC 1 cut(s) 156
Bsh1285I CGRYCG 1 cut(s) 700
BshVI ATCGAT 2 cut(s) 690, 696
BsiEI CGRYCG 1 cut(s) 700
BsiHKAI GWGCWC 1 cut(s) 420
BsiHKCI CYCGRG 1 cut(s) 500
BsiSI CCGG 4 cut(s) 317, 327, 632, 733
BslI CCNNNNNNNGG 3 cut(s) 207, 377, 631
BsmAI GTCTC 1 cut(s) 744
BsoBI CYCGRG 1 cut(s) 500
Bsp1286I GDGCHC 1 cut(s) 420
Bsp13I TCCGGA 2 cut(s) 326, 631
Bsp1407I TGTACA 1 cut(s) 109
Bsp143I GATC 4 cut(s) 427, 511, 687, 697
BspCNI CTCAG 2 cut(s) 319, 367
BspDI ATCGAT 2 cut(s) 690, 696
BspEI TCCGGA 2 cut(s) 326, 631
BspHI TCATGA 1 cut(s) 406
BspPI GGATC 1 cut(s) 519
BspTI CTTAAG 1 cut(s) 289
BsrGI TGTACA 1 cut(s) 109
BsrI ACTGG 2 cut(s) 134, 777
BssMI GATC 4 cut(s) 427, 511, 687, 697
Bst4CI ACNGT 1 cut(s) 59
BstAFI CTTAAG 1 cut(s) 289
BstAUI TGTACA 1 cut(s) 109
BstBAI YACGTR 1 cut(s) 95
BstDEI CTNAG 3 cut(s) 306, 375, 607
BstEII GGTNACC 1 cut(s) 620
BstF5I GGATG 3 cut(s) 129, 285, 640
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 4 cut(s) 430, 514, 690, 700
BstMAI GTCTC 1 cut(s) 744
BstMBI GATC 4 cut(s) 427, 511, 687, 697
BstMCI CGRYCG 1 cut(s) 700
BstMWI GCNNNNNNNGC 1 cut(s) 483
BstPAI GACNNNNGTC 1 cut(s) 291
BstPI GGTNACC 1 cut(s) 620
BstSCI CCNGG 2 cut(s) 315, 731
BstSFI CTRYAG 1 cut(s) 264
BstV1I GCAGC 1 cut(s) 156
Bsu15I ATCGAT 2 cut(s) 690, 696
BsuI GTATCC 3 cut(s) 263, 334, 622
BsuTUI ATCGAT 2 cut(s) 690, 696
BtsCI GGATG 3 cut(s) 129, 285, 640
CciI TCATGA 1 cut(s) 406
CfoI GCGC 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 55
ClaI ATCGAT 2 cut(s) 690, 696
CpoI CGGWCCG 1 cut(s) 55
Csp6I GTAC 3 cut(s) 60, 110, 463
CspCI CAANNNNNGTGG 2 cut(s) 454, 489
CspI CGGWCCG 1 cut(s) 55
CviAII CATG 4 cut(s) 29, 407, 599, 680
CviJI RGCY 2 cut(s) 477, 769
CviKI_1 RGCY 2 cut(s) 477, 769
CviQI GTAC 3 cut(s) 60, 110, 463
DdeI CTNAG 3 cut(s) 306, 375, 607
DpnI GATC 4 cut(s) 429, 513, 689, 699
DpnII GATC 4 cut(s) 427, 511, 687, 697
Eco32I GATATC 1 cut(s) 694
Eco47I GGWCC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 84
Eco88I CYCGRG 1 cut(s) 500
Eco91I GGTNACC 1 cut(s) 620
EcoO65I GGTNACC 1 cut(s) 620
EcoRV GATATC 1 cut(s) 694
FaeI CATG 4 cut(s) 32, 410, 602, 683
FatI CATG 4 cut(s) 28, 406, 598, 679
Fnu4HI GCNGC 1 cut(s) 145
FokI GGATG 3 cut(s) 116, 292, 647
Fsp4HI GCNGC 1 cut(s) 145
FspBI CTAG 1 cut(s) 335
GlaI GCGC 1 cut(s) 50
GluI GCNGC 1 cut(s) 145
HapII CCGG 4 cut(s) 317, 327, 632, 733
HhaI GCGC 1 cut(s) 51
Hin1II CATG 4 cut(s) 32, 410, 602, 683
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HinfI GANTC 4 cut(s) 22, 164, 714, 809
HpaII CCGG 4 cut(s) 317, 327, 632, 733
HphI GGTGA 1 cut(s) 435
Hpy166II GTNNAC 1 cut(s) 443
Hpy188I TCNGA 4 cut(s) 376, 616, 787, 814
Hpy188III TCNNGA 5 cut(s) 327, 407, 425, 493, 632
Hpy8I GTNNAC 1 cut(s) 443
Hpy99I CGWCG 1 cut(s) 818
HpyAV CCTTC 2 cut(s) 386, 611
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4IV ACGT 2 cut(s) 8, 94
HpyCH4V TGCA 1 cut(s) 144
HpyF10VI GCNNNNNNNGC 1 cut(s) 483
HpyF3I CTNAG 3 cut(s) 306, 375, 607
HpySE526I ACGT 2 cut(s) 8, 94
Hsp92II CATG 4 cut(s) 32, 410, 602, 683
HspAI GCGC 1 cut(s) 49
Kpn2I TCCGGA 2 cut(s) 326, 631
Kzo9I GATC 4 cut(s) 427, 511, 687, 697
LmnI GCTCC 2 cut(s) 535, 766
LpnPI CCDG 8 cut(s) 71, 147, 330, 340, 436, 645, 746, 758
Lsp1109I GCAGC 1 cut(s) 156
MaeI CTAG 1 cut(s) 335
MaeII ACGT 2 cut(s) 8, 94
MaeIII GTNAC 2 cut(s) 88, 620
MalI GATC 4 cut(s) 429, 513, 689, 699
MboI GATC 4 cut(s) 427, 511, 687, 697
MboII GAAGA 1 cut(s) 50
MfeI CAATTG 1 cut(s) 17
MhlI GDGCHC 1 cut(s) 420
MluCI AATT 2 cut(s) 17, 776
MnlI CCTC 8 cut(s) 323, 332, 335, 370, 429, 496, 502, 509
MroI TCCGGA 2 cut(s) 326, 631
MroXI GAANNNNTTC 1 cut(s) 713
MseI TTAA 2 cut(s) 12, 290
MslI CAYNNNNRTG 1 cut(s) 411
MspCI CTTAAG 1 cut(s) 289
MspI CCGG 4 cut(s) 317, 327, 632, 733
MspR9I CCNGG 2 cut(s) 317, 733
MunI CAATTG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 483
NciI CCSGG 2 cut(s) 317, 733
NdeII GATC 4 cut(s) 427, 511, 687, 697
NlaIII CATG 4 cut(s) 32, 410, 602, 683
PaeR7I CTCGAG 1 cut(s) 500
PagI TCATGA 1 cut(s) 406
PcsI WCGNNNNNNNCGW 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 713
PfeI GAWTC 4 cut(s) 22, 164, 714, 809
PflMI CCANNNNNTGG 1 cut(s) 207
PkrI GCNGC 1 cut(s) 146
Ple19I CGATCG 1 cut(s) 700
Ppu21I YACGTR 1 cut(s) 95
PshAI GACNNNNGTC 1 cut(s) 291
PsiI TTATAA 1 cut(s) 188
PspEI GGTNACC 1 cut(s) 620
PspPI GGNCC 1 cut(s) 55
PspXI VCTCGAGB 1 cut(s) 500
PvuI CGATCG 1 cut(s) 700
RsaI GTAC 3 cut(s) 61, 111, 464
RsaNI GTAC 3 cut(s) 60, 110, 463
RseI CAYNNNNRTG 1 cut(s) 411
Rsr2I CGGWCCG 1 cut(s) 55
RsrII CGGWCCG 1 cut(s) 55
SaqAI TTAA 2 cut(s) 12, 290
SatI GCNGC 1 cut(s) 145
Sau3AI GATC 4 cut(s) 427, 511, 687, 697
Sau96I GGNCC 1 cut(s) 55
ScrFI CCNGG 2 cut(s) 317, 733
SduI GDGCHC 1 cut(s) 420
SetI ASST 7 cut(s) 11, 97, 448, 501, 507, 622, 771
SfcI CTRYAG 1 cut(s) 264
Sfr274I CTCGAG 1 cut(s) 500
SinI GGWCC 1 cut(s) 55
SlaI CTCGAG 1 cut(s) 500
SmiMI CAYNNNNRTG 1 cut(s) 411
SmlI CTYRAG 2 cut(s) 289, 500
SmoI CTYRAG 2 cut(s) 289, 500
Sse9I AATT 2 cut(s) 17, 776
SspMI CTAG 1 cut(s) 335
StyD4I CCNGG 2 cut(s) 315, 731
TaaI ACNGT 1 cut(s) 59
TaiI ACGT 2 cut(s) 11, 97
TaqI TCGA 4 cut(s) 455, 501, 690, 696
TasI AATT 2 cut(s) 17, 776
TatI WGTACW 2 cut(s) 109, 462
TfiI GAWTC 4 cut(s) 22, 164, 714, 809
Tru1I TTAA 2 cut(s) 12, 290
Tru9I TTAA 2 cut(s) 12, 290
TseI GCWGC 1 cut(s) 144
TspDTI ATGAA 3 cut(s) 615, 651, 696
TspGWI ACGGA 3 cut(s) 68, 92, 762
Van91I CCANNNNNTGG 1 cut(s) 207
Vha464I CTTAAG 1 cut(s) 289
VpaK11BI GGWCC 1 cut(s) 55
XhoI CTCGAG 1 cut(s) 500
XmnI GAANNNNTTC 1 cut(s) 713
XspI CTAG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.