Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012401

Orthogroup ID

OG0017525

Physical Location & Seq

Genomic Coordinates Forward (+)

29997 .. 30854

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12401g00050.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGATACTTTCCGTTTTGTCGAGCCCTGCTTTGGTCTCTGGTTTGATGGTTGCACGTGCTAAAAATCCGGTACATTCCGTTTTGTTTCCCATTCCAGTCTTTCGCGACACTTCGGGTTTACTTCTTTTGTTAGGTCTCGACTTCTTCGCAATGATCTTCCCAGTAGTTCATATAGGAGCTATAGCCGTTTCATTCCTATTCGTTGTTATGATGTTCCATATTCAAATAGCGGAGATTCACGAAGAAGTATTGCGCTATTTACCTGTGAGTGTTGGACAGTTGTCGCGCTGGCGGAGCGGGGAGCCTACAGGGAAGATTGGGGCAATGAGGAGCTCGACGAGTATCTGCAGACCCTCTACCCCATCGACTACATCTATCGCTGAACCAACTTCCGAACCGACTGACTCATCTACCGAATCCACAGAACCGACTGCAGCTTCATTGACTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko05012 map00190 map01100 map04714 map04723 map05012

Pfam Domains

Protein Families

Oxidored_q3

Protein Analysis

151

Amino Acids

16.1

Weight (kDa)

5.76

Isoelectric Point (pI)

60.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07681 AT2G07718 AT2G07773 ATMG00270 ATMG00590 ATMG00890 ATMG00910
fragaria_vesca	FvH4_2g28560
pyrus_communis	pycom12401g00050
rosa_chinensis	RchiOBHm_MTg0498991
rosa_laevigata	RLG00000000420
rosa_samantha	Rh1BG018400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	297
AccII	CGCG	2 cut(s)	105, 286
AciI	CCGC	3 cut(s)	230, 292, 297
AcvI	CACGTG	1 cut(s)	56
AfaI	GTAC	1 cut(s)	72
AfiI	CCNNNNNNNGG	1 cut(s)	31
AgsI	TTSAA	1 cut(s)	224
AluBI	AGCT	3 cut(s)	179, 333, 437
AluI	AGCT	3 cut(s)	179, 333, 437
Alw21I	GWGCWC	1 cut(s)	335
Alw26I	GTCTC	2 cut(s)	40, 140
ApeKI	GCWGC	1 cut(s)	434
AspLEI	GCGC	2 cut(s)	255, 288
BanII	GRGCYC	2 cut(s)	26, 335
BbrPI	CACGTG	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	335
BbvI	GCAGC	1 cut(s)	446
BccI	CCATC	2 cut(s)	40, 370
BceAI	ACGGC	1 cut(s)	170
BcoDI	GTCTC	2 cut(s)	40, 140
BfmI	CTRYAG	4 cut(s)	180, 306, 346, 432
BisI	GCNGC	1 cut(s)	435
BlsI	GCNGC	1 cut(s)	436
BmiI	GGNNCC	1 cut(s)	303
BmrI	ACTGGG	1 cut(s)	155
BmuI	ACTGGG	1 cut(s)	155
BoxI	GACNNNNGTC	1 cut(s)	280
BsaAI	YACGTR	1 cut(s)	56
BsaI	GGTCTC	2 cut(s)	40, 140
BsaWI	WCCGGW	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse1I	ACTGG	2 cut(s)	95, 161
Bse3DI	GCAATG	2 cut(s)	156, 330
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMI	GCAATG	2 cut(s)	156, 330
BseNI	ACTGG	2 cut(s)	95, 161
BseRI	GAGGAG	1 cut(s)	343
BseXI	GCAGC	1 cut(s)	446
Bsh1236I	CGCG	2 cut(s)	105, 286
BsiHKAI	GWGCWC	1 cut(s)	335
BsiSI	CCGG	1 cut(s)	68
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmAI	GTCTC	2 cut(s)	40, 140
Bso31I	GGTCTC	2 cut(s)	40, 140
Bsp1286I	GDGCHC	2 cut(s)	26, 335
Bsp143I	GATC	1 cut(s)	153
Bsp68I	TCGCGA	1 cut(s)	105
BspACI	CCGC	3 cut(s)	230, 292, 297
BspFNI	CGCG	2 cut(s)	105, 286
BspLI	GGNNCC	1 cut(s)	303
BspMAI	CTGCAG	2 cut(s)	350, 436
BspTNI	GGTCTC	2 cut(s)	40, 140
BsrBI	CCGCTC	1 cut(s)	297
BsrDI	GCAATG	2 cut(s)	156, 330
BsrI	ACTGG	2 cut(s)	95, 161
BssMI	GATC	1 cut(s)	153
Bst4CI	ACNGT	1 cut(s)	279
BstBAI	YACGTR	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	290
BstFNI	CGCG	2 cut(s)	105, 286
BstHHI	GCGC	2 cut(s)	255, 288
BstKTI	GATC	1 cut(s)	156
BstMAI	GTCTC	2 cut(s)	40, 140
BstMBI	GATC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	1 cut(s)	294
BstPAI	GACNNNNGTC	1 cut(s)	280
BstSFI	CTRYAG	4 cut(s)	180, 306, 346, 432
BstUI	CGCG	2 cut(s)	105, 286
BstV1I	GCAGC	1 cut(s)	446
BtuMI	TCGCGA	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	290
CfoI	GCGC	2 cut(s)	255, 288
Csp6I	GTAC	1 cut(s)	71
CviJI	RGCY	6 cut(s)	24, 179, 185, 304, 333, 437
CviKI_1	RGCY	6 cut(s)	24, 179, 185, 304, 333, 437
CviQI	GTAC	1 cut(s)	71
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
EciI	GGCGGA	1 cut(s)	307
Ecl136II	GAGCTC	1 cut(s)	333
Eco24I	GRGCYC	2 cut(s)	26, 335
Eco31I	GGTCTC	2 cut(s)	40, 140
Eco53kI	GAGCTC	1 cut(s)	333
Eco72I	CACGTG	1 cut(s)	56
EcoICRI	GAGCTC	1 cut(s)	333
EcoT38I	GRGCYC	2 cut(s)	26, 335
FaiI	YATR	5 cut(s)	171, 173, 182, 209, 219
FauI	CCCGC	1 cut(s)	290
Fnu4HI	GCNGC	1 cut(s)	435
FriOI	GRGCYC	2 cut(s)	26, 335
Fsp4HI	GCNGC	1 cut(s)	435
GlaI	GCGC	2 cut(s)	254, 287
GluI	GCNGC	1 cut(s)	435
HapII	CCGG	1 cut(s)	68
HhaI	GCGC	2 cut(s)	255, 288
Hin6I	GCGC	2 cut(s)	253, 286
HinP1I	GCGC	2 cut(s)	253, 286
HinfI	GANTC	3 cut(s)	235, 404, 416
HpaII	CCGG	1 cut(s)	68
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	1 cut(s)	394
Hpy188III	TCNNGA	3 cut(s)	104, 137, 239
Hpy8I	GTNNAC	1 cut(s)	119
Hpy99I	CGWCG	1 cut(s)	340
HpyCH4III	ACNGT	1 cut(s)	279
HpyCH4IV	ACGT	1 cut(s)	55
HpyCH4V	TGCA	3 cut(s)	53, 348, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	294
HpySE526I	ACGT	1 cut(s)	55
HspAI	GCGC	2 cut(s)	253, 286
Kzo9I	GATC	1 cut(s)	153
LmnI	GCTCC	4 cut(s)	176, 294, 301, 330
LpnPI	CCDG	8 cut(s)	24, 39, 81, 108, 174, 274, 276, 294
Lsp1109I	GCAGC	1 cut(s)	446
MaeII	ACGT	1 cut(s)	55
MalI	GATC	1 cut(s)	155
MbiI	CCGCTC	1 cut(s)	297
MboI	GATC	1 cut(s)	153
MboII	GAAGA	4 cut(s)	136, 148, 254, 325
MhlI	GDGCHC	2 cut(s)	26, 335
MlyI	GAGTC	1 cut(s)	398
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	2 cut(s)	321, 364
MspI	CCGG	1 cut(s)	68
MvnI	CGCG	2 cut(s)	105, 286
MwoI	GCNNNNNNNGC	1 cut(s)	294
NdeII	GATC	1 cut(s)	153
NlaIV	GGNNCC	1 cut(s)	303
NruI	TCGCGA	1 cut(s)	105
PfeI	GAWTC	2 cut(s)	235, 416
PkrI	GCNGC	1 cut(s)	436
PleI	GAGTC	1 cut(s)	398
PmaCI	CACGTG	1 cut(s)	56
PmlI	CACGTG	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	398
Ppu21I	YACGTR	1 cut(s)	56
PshAI	GACNNNNGTC	1 cut(s)	280
Psp124BI	GAGCTC	1 cut(s)	335
PspCI	CACGTG	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	303
PstI	CTGCAG	2 cut(s)	350, 436
RruI	TCGCGA	1 cut(s)	105
RsaI	GTAC	1 cut(s)	72
RsaNI	GTAC	1 cut(s)	71
SacI	GAGCTC	1 cut(s)	335
SatI	GCNGC	1 cut(s)	435
Sau3AI	GATC	1 cut(s)	153
SchI	GAGTC	1 cut(s)	398
SduI	GDGCHC	2 cut(s)	26, 335
SetI	ASST	6 cut(s)	58, 136, 181, 265, 335, 439
SfcI	CTRYAG	4 cut(s)	180, 306, 346, 432
SsiI	CCGC	3 cut(s)	230, 292, 297
SstI	GAGCTC	1 cut(s)	335
TaaI	ACNGT	1 cut(s)	279
TaiI	ACGT	1 cut(s)	58
TaqI	TCGA	4 cut(s)	20, 138, 335, 365
TfiI	GAWTC	2 cut(s)	235, 416
TseI	GCWGC	1 cut(s)	434
TspDTI	ATGAA	3 cut(s)	158, 180, 429
TspGWI	ACGGA	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.