ATMG00910

cytochrome c biosynthesis ccmC-like mitochondrial

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Mt
OG0017525
Physical Location & Seq
Reverse (-)
241306 .. 241953
648 bp
Loading structure...
UTR
Exon/CDS
Intron
ATMG00910.1

Sequence Viewer

Length: 648 bp
ATGCCTACAGCTAATCAATTGATTCGTCATGGTAGAGAAGAAAAACGGCGCACGGACCGTACTGAAGTTTTGGTCTTTGGTTTGCTGGTTACACGTATTATCCGTTTTGTACATTCTGTTTTGTTTCCCATCCCAGTCTTTTGCAGCATAAAAGTCCTTTTAGATTACTTTTGTTCGCTTCCTATTATAGACAAACTTTCCAAAAAATGGCAACTCATTTGGTTTTATGTTCTTTCAGTTATTCTCTGTAAATCTTTATTTGCTGTAGGATACTTGTGGATGGACGACTTAAGTCGTGCCATTTCTCAGTTCTACCCGGTGGTATCCGGAGGACTAGGAGGAGGAAATACGCCAATGCCCCCGACAAATCCATCTGAGGGTGGTCTTTTAGAAGGATATTATGCTCATGAGAATGAGCACTCTCACGATCAGCAGAGGGGTTCACCTTTCTGGTCGAAAGAGTACAAGGAAAGTGGCTCAAAACGCCTTTTCTTGAACCTCGAGGTAGAGGATCAAAACACAGATACCATCGGGGAGCAAGTAAAAGCAGAGAGTGGTAAATGCGAAAAAATCAAGGCAAAAATAATAGCAAAAACACATGAACTCTTAGTATCCGAAGATACAAAATTCCAGATAAAAACGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_C_asm

Protein Analysis

215

Amino Acids

24.52

Weight (kDa)

8.28

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07681 AT2G07718 AT2G07773 ATMG00270 ATMG00590 ATMG00890 ATMG00910
fragaria_vesca FvH4_2g28560
pyrus_communis pycom12401g00050
rosa_chinensis RchiOBHm_MTg0498991
rosa_laevigata RLG00000000420
rosa_samantha Rh1BG018400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 500
AccB7I CCANNNNNTGG 1 cut(s) 207
AccIII TCCGGA 1 cut(s) 326
AclWI GGATC 1 cut(s) 519
AcsI RAATTY 1 cut(s) 626
AcuI CTGAAG 1 cut(s) 84
AfaI GTAC 3 cut(s) 61, 111, 464
AfiI CCNNNNNNNGG 2 cut(s) 207, 377
AflII CTTAAG 1 cut(s) 289
AflIII ACRYGT 1 cut(s) 92
AgsI TTSAA 1 cut(s) 496
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
Alw21I GWGCWC 1 cut(s) 420
AlwI GGATC 1 cut(s) 519
Ama87I CYCGRG 1 cut(s) 500
Aor13HI TCCGGA 1 cut(s) 326
ApeKI GCWGC 1 cut(s) 144
ApoI RAATTY 1 cut(s) 626
AspLEI GCGC 1 cut(s) 51
AspS9I GGNCC 1 cut(s) 55
AsuC2I CCSGG 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 435
AvaI CYCGRG 1 cut(s) 500
AvaII GGWCC 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 420
BbvI GCAGC 1 cut(s) 156
BccI CCATC 4 cut(s) 137, 274, 379, 536
BceAI ACGGC 1 cut(s) 62
BciVI GTATCC 3 cut(s) 263, 334, 622
BcnI CCSGG 1 cut(s) 317
BfaI CTAG 1 cut(s) 335
BfmI CTRYAG 2 cut(s) 6, 264
BfrI CTTAAG 1 cut(s) 289
BfuI GTATCC 3 cut(s) 263, 334, 622
BisI GCNGC 1 cut(s) 145
BlsI GCNGC 1 cut(s) 146
Bme1390I CCNGG 1 cut(s) 317
Bme18I GGWCC 1 cut(s) 55
BmeT110I CYCGRG 1 cut(s) 500
BmgT120I GGNCC 1 cut(s) 55
BmrFI CCNGG 1 cut(s) 317
BmrI ACTGGG 1 cut(s) 128
BmuI ACTGGG 1 cut(s) 128
BoxI GACNNNNGTC 1 cut(s) 291
BpuMI CCSGG 1 cut(s) 317
BsaAI YACGTR 1 cut(s) 95
BsaWI WCCGGW 1 cut(s) 326
Bsc4I CCNNNNNNNGG 2 cut(s) 207, 377
Bse1I ACTGG 1 cut(s) 134
BseAI TCCGGA 1 cut(s) 326
BseGI GGATG 2 cut(s) 129, 285
BseLI CCNNNNNNNGG 2 cut(s) 207, 377
BseMII CTCAG 2 cut(s) 320, 366
BseNI ACTGG 1 cut(s) 134
BseRI GAGGAG 1 cut(s) 354
BseXI GCAGC 1 cut(s) 156
BsiHKAI GWGCWC 1 cut(s) 420
BsiHKCI CYCGRG 1 cut(s) 500
BsiSI CCGG 2 cut(s) 317, 327
BslI CCNNNNNNNGG 2 cut(s) 207, 377
BsoBI CYCGRG 1 cut(s) 500
Bsp1286I GDGCHC 1 cut(s) 420
Bsp13I TCCGGA 1 cut(s) 326
Bsp1407I TGTACA 1 cut(s) 109
Bsp143I GATC 2 cut(s) 427, 511
BspCNI CTCAG 2 cut(s) 319, 367
BspEI TCCGGA 1 cut(s) 326
BspHI TCATGA 1 cut(s) 406
BspPI GGATC 1 cut(s) 519
BspTI CTTAAG 1 cut(s) 289
BsrGI TGTACA 1 cut(s) 109
BsrI ACTGG 1 cut(s) 134
BssMI GATC 2 cut(s) 427, 511
Bst4CI ACNGT 1 cut(s) 59
BstAFI CTTAAG 1 cut(s) 289
BstAUI TGTACA 1 cut(s) 109
BstBAI YACGTR 1 cut(s) 95
BstDEI CTNAG 3 cut(s) 306, 375, 607
BstF5I GGATG 2 cut(s) 129, 285
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 2 cut(s) 430, 514
BstMBI GATC 2 cut(s) 427, 511
BstMWI GCNNNNNNNGC 1 cut(s) 483
BstPAI GACNNNNGTC 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 315
BstSFI CTRYAG 2 cut(s) 6, 264
BstV1I GCAGC 1 cut(s) 156
BsuI GTATCC 3 cut(s) 263, 334, 622
BtsCI GGATG 2 cut(s) 129, 285
CciI TCATGA 1 cut(s) 406
CfoI GCGC 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 55
CpoI CGGWCCG 1 cut(s) 55
Csp6I GTAC 3 cut(s) 60, 110, 463
CspCI CAANNNNNGTGG 2 cut(s) 454, 489
CspI CGGWCCG 1 cut(s) 55
CviAII CATG 3 cut(s) 29, 407, 599
CviJI RGCY 2 cut(s) 11, 477
CviKI_1 RGCY 2 cut(s) 11, 477
CviQI GTAC 3 cut(s) 60, 110, 463
DdeI CTNAG 3 cut(s) 306, 375, 607
DpnI GATC 2 cut(s) 429, 513
DpnII GATC 2 cut(s) 427, 511
Eco47I GGWCC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 84
Eco88I CYCGRG 1 cut(s) 500
FaeI CATG 3 cut(s) 32, 410, 602
FaiI YATR 8 cut(s) 30, 149, 188, 228, 402, 408, 600, 646
FatI CATG 3 cut(s) 28, 406, 598
Fnu4HI GCNGC 1 cut(s) 145
FokI GGATG 2 cut(s) 116, 292
Fsp4HI GCNGC 1 cut(s) 145
FspBI CTAG 1 cut(s) 335
GlaI GCGC 1 cut(s) 50
GluI GCNGC 1 cut(s) 145
HapII CCGG 2 cut(s) 317, 327
HhaI GCGC 1 cut(s) 51
Hin1II CATG 3 cut(s) 32, 410, 602
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HinfI GANTC 1 cut(s) 22
HpaII CCGG 2 cut(s) 317, 327
HphI GGTGA 1 cut(s) 435
Hpy166II GTNNAC 1 cut(s) 443
Hpy188I TCNGA 2 cut(s) 376, 616
Hpy188III TCNNGA 5 cut(s) 327, 407, 425, 493, 631
Hpy8I GTNNAC 1 cut(s) 443
HpyAV CCTTC 1 cut(s) 386
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 1 cut(s) 144
HpyF10VI GCNNNNNNNGC 1 cut(s) 483
HpyF3I CTNAG 3 cut(s) 306, 375, 607
HpySE526I ACGT 1 cut(s) 94
Hsp92II CATG 3 cut(s) 32, 410, 602
HspAI GCGC 1 cut(s) 49
Kpn2I TCCGGA 1 cut(s) 326
Kzo9I GATC 2 cut(s) 427, 511
LmnI GCTCC 1 cut(s) 535
LpnPI CCDG 6 cut(s) 71, 147, 330, 340, 436, 644
Lsp1109I GCAGC 1 cut(s) 156
MaeI CTAG 1 cut(s) 335
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 1 cut(s) 88
MalI GATC 2 cut(s) 429, 513
MboI GATC 2 cut(s) 427, 511
MboII GAAGA 2 cut(s) 50, 629
MfeI CAATTG 1 cut(s) 17
MhlI GDGCHC 1 cut(s) 420
MluCI AATT 2 cut(s) 17, 626
MnlI CCTC 8 cut(s) 323, 332, 335, 370, 429, 496, 502, 509
MroI TCCGGA 1 cut(s) 326
MseI TTAA 1 cut(s) 290
MslI CAYNNNNRTG 1 cut(s) 411
MspCI CTTAAG 1 cut(s) 289
MspI CCGG 2 cut(s) 317, 327
MspR9I CCNGG 1 cut(s) 317
MunI CAATTG 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 483
NciI CCSGG 1 cut(s) 317
NdeII GATC 2 cut(s) 427, 511
NlaIII CATG 3 cut(s) 32, 410, 602
PaeR7I CTCGAG 1 cut(s) 500
PagI TCATGA 1 cut(s) 406
PcsI WCGNNNNNNNCGW 1 cut(s) 100
PfeI GAWTC 1 cut(s) 22
PflMI CCANNNNNTGG 1 cut(s) 207
PkrI GCNGC 1 cut(s) 146
Ppu21I YACGTR 1 cut(s) 95
PshAI GACNNNNGTC 1 cut(s) 291
PspPI GGNCC 1 cut(s) 55
PspXI VCTCGAGB 1 cut(s) 500
RsaI GTAC 3 cut(s) 61, 111, 464
RsaNI GTAC 3 cut(s) 60, 110, 463
RseI CAYNNNNRTG 1 cut(s) 411
Rsr2I CGGWCCG 1 cut(s) 55
RsrII CGGWCCG 1 cut(s) 55
SaqAI TTAA 1 cut(s) 290
SatI GCNGC 1 cut(s) 145
Sau3AI GATC 2 cut(s) 427, 511
Sau96I GGNCC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 317
SduI GDGCHC 1 cut(s) 420
SetI ASST 5 cut(s) 13, 97, 448, 501, 507
SfcI CTRYAG 2 cut(s) 6, 264
Sfr274I CTCGAG 1 cut(s) 500
SinI GGWCC 1 cut(s) 55
SlaI CTCGAG 1 cut(s) 500
SmiMI CAYNNNNRTG 1 cut(s) 411
SmlI CTYRAG 2 cut(s) 289, 500
SmoI CTYRAG 2 cut(s) 289, 500
Sse9I AATT 2 cut(s) 17, 626
SspMI CTAG 1 cut(s) 335
StyD4I CCNGG 1 cut(s) 315
TaaI ACNGT 1 cut(s) 59
TaiI ACGT 1 cut(s) 97
TaqI TCGA 2 cut(s) 455, 501
TasI AATT 2 cut(s) 17, 626
TatI WGTACW 2 cut(s) 109, 462
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 1 cut(s) 290
Tru9I TTAA 1 cut(s) 290
TseI GCWGC 1 cut(s) 144
TspDTI ATGAA 1 cut(s) 615
TspGWI ACGGA 2 cut(s) 68, 92
Van91I CCANNNNNTGG 1 cut(s) 207
Vha464I CTTAAG 1 cut(s) 289
VpaK11BI GGWCC 1 cut(s) 55
XapI RAATTY 1 cut(s) 626
XhoI CTCGAG 1 cut(s) 500
XspI CTAG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.