RLG00000000420

Belongs to the complex I subunit 6 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0017525
Physical Location & Seq
Reverse (-)
912928 .. 914997
2070 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000420

Sequence Viewer

Length: 1095 bp
ATGCACAGAGGAACAGAGCGAACTTCATATATCCCTTTTCCACTCAATCCAGAAACAAGATCGGACGTTATTCCGGTTCGTCTCCATTTTTGTGAAACTATTCCTCAAGCAAGGCAGCCGATAAGTCATCGAAGGGTTTGTGTGAATAATGGAATGGTAAGCATTACTCATTTAAAAGTGTCCCACGCTGATCTAATATTTTTTCAAGAAAATGACGCGAGAATCCGCGGTGAAGAAATAAGGAGATCTTTCTATATCGAAATATCAGTTGAAAAAATCATAGGCAAATTCCTGGATCACCCGTTGGGTTCTTCTATGCAAGAAGAAGACTTAGAAAGAACAAAGAGGTTTGGATCCGAAAAAGGGCCCAGAACGCTAAAAGGTAGGGGAGAAGCAAGCCGAACCTCTGATCGACCTGGGCACATAAAAAATTCTCGGCGTCGAGAGAGATTTGAGATTCCGGAAGGACGACGTACCATGATACTTTCTGTTTTGTCGAGCCCTGCTTTGGTCTCTGGTTTGATGGTTGCACGTGCTAAAAATCCGGTACATTCCGTTTTGTTTCCCATTCCAGTCTTTCGCGACACTTCAGGTTTACTTCTTTTGTTAGGTCTCGACTTCTTCGCTATGATCTTCCCAGTAGTTCATATAGGAGCTATAGCCGTTTTATTCCTATTCGTTGTTATGATGTTCCATATTCAAATAGCGGAGATTCACGAAGAAGTATTGCGCTATTTACCAGTGAGTGGTATTATTGGACTGATCCTTTGGTGGGAAATGTTCTTCATTTTAGATAACGAAACCATTCCCTTACTACCAACCCAAAGAAATACGACCTCTCTGAGATATACGGTTTATGCCGGAAAGGTACGAAGTTGGACTAATTTGGAAACATTGGGCAATTTACTTTATACCTACTATTTCGTCTGGTTTTTGGTTCCGAGTCTTATTTTATTAGTAGCCATGATTGGGGCTATAGTACTGACTATGCATAGGACTACTAAGGTGAAAAGACAGGATGTATTCCGACGAAATGCTATTGATTTTAGGAGGACTATAATGAGGAGGACGACAGACCCCGTCACGATCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko04723 ko05012 map00190 map01100 map04714 map04723 map05012
Pfam Domains
Protein Families
Oxidored_q3

Protein Analysis

365

Amino Acids

42.05

Weight (kDa)

10.06

Isoelectric Point (pI)

54.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S4 PF01479 26 - 66 1.1e-06 S4 domain
Oxidored_q3 PF00499 172 - 328 2.8e-30 NADH-ubiquinone/plastoquinone oxidoreductase chain 6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07681 AT2G07718 AT2G07773 ATMG00270 ATMG00590 ATMG00890 ATMG00910
fragaria_vesca FvH4_2g28560
pyrus_communis pycom12401g00050
rosa_chinensis RchiOBHm_MTg0498991
rosa_laevigata RLG00000000420
rosa_samantha Rh1BG018400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 746
AccII CGCG 3 cut(s) 218, 228, 582
AccIII TCCGGA 1 cut(s) 460
AciI CCGC 3 cut(s) 226, 228, 707
AclWI GGATC 4 cut(s) 303, 348, 361, 757
AcsI RAATTY 2 cut(s) 287, 430
AcuI CTGAAG 1 cut(s) 573
AcvI CACGTG 1 cut(s) 533
AcyI GRCGYC 1 cut(s) 439
AfaI GTAC 4 cut(s) 475, 549, 870, 981
AfiI CCNNNNNNNGG 5 cut(s) 363, 508, 746, 772, 969
AgsI TTSAA 3 cut(s) 206, 272, 701
AjnI CCWGG 2 cut(s) 291, 415
AluBI AGCT 1 cut(s) 656
AluI AGCT 1 cut(s) 656
Alw26I GTCTC 3 cut(s) 86, 517, 617
AlwI GGATC 4 cut(s) 303, 348, 361, 757
Aor13HI TCCGGA 1 cut(s) 460
AoxI GGCC 1 cut(s) 365
ApaI GGGCCC 1 cut(s) 369
ApeKI GCWGC 1 cut(s) 115
ApoI RAATTY 2 cut(s) 287, 430
ArsI GACNNNNNNTTYG 2 cut(s) 750, 782
Asp700I GAANNNNTTC 2 cut(s) 99, 804
AspLEI GCGC 1 cut(s) 732
AspS9I GGNCC 2 cut(s) 365, 366
AsuHPI GGTGA 3 cut(s) 242, 290, 1018
BaeGI GKGCMC 2 cut(s) 369, 423
BamHI GGATCC 1 cut(s) 353
BanII GRGCYC 2 cut(s) 369, 503
BbrPI CACGTG 1 cut(s) 533
BbsI GAAGAC 1 cut(s) 333
BbvI GCAGC 1 cut(s) 127
BccI CCATC 1 cut(s) 517
BceAI ACGGC 1 cut(s) 647
BciT130I CCWGG 2 cut(s) 293, 417
BcoDI GTCTC 3 cut(s) 86, 517, 617
BfmI CTRYAG 2 cut(s) 657, 975
BglII AGATCT 1 cut(s) 245
BisI GCNGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 117
BmcAI AGTACT 1 cut(s) 981
Bme1390I CCNGG 2 cut(s) 293, 417
BmgT120I GGNCC 2 cut(s) 365, 366
BmiI GGNNCC 3 cut(s) 355, 367, 939
BmrFI CCNGG 2 cut(s) 293, 417
BmrI ACTGGG 1 cut(s) 632
BmuI ACTGGG 1 cut(s) 632
BpiI GAAGAC 1 cut(s) 333
BpuEI CTTGAG 1 cut(s) 90
BsaAI YACGTR 1 cut(s) 533
BsaHI GRCGYC 1 cut(s) 439
BsaI GGTCTC 2 cut(s) 517, 617
BsaJI CCNNGG 2 cut(s) 226, 416
BsaWI WCCGGW 3 cut(s) 73, 460, 544
Bsc4I CCNNNNNNNGG 5 cut(s) 363, 508, 746, 772, 969
Bse1I ACTGG 3 cut(s) 572, 638, 740
BseAI TCCGGA 1 cut(s) 460
BseBI CCWGG 2 cut(s) 293, 417
BseDI CCNNGG 2 cut(s) 226, 416
BseGI GGATG 1 cut(s) 1024
BseLI CCNNNNNNNGG 5 cut(s) 363, 508, 746, 772, 969
BseMII CTCAG 1 cut(s) 833
BseNI ACTGG 3 cut(s) 572, 638, 740
BseRI GAGGAG 1 cut(s) 1078
BseSI GKGCMC 2 cut(s) 369, 423
BseXI GCAGC 1 cut(s) 127
Bsh1236I CGCG 3 cut(s) 218, 228, 582
BshFI GGCC 1 cut(s) 367
BsiSI CCGG 4 cut(s) 74, 461, 545, 861
BslFI GGGAC 1 cut(s) 166
BslI CCNNNNNNNGG 5 cut(s) 363, 508, 746, 772, 969
BsmAI GTCTC 3 cut(s) 86, 517, 617
BsmBI CGTCTC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 166
BsnI GGCC 1 cut(s) 367
Bso31I GGTCTC 2 cut(s) 517, 617
Bsp120I GGGCCC 1 cut(s) 365
Bsp1286I GDGCHC 3 cut(s) 369, 423, 503
Bsp13I TCCGGA 1 cut(s) 460
Bsp143I GATC 9 cut(s) 59, 190, 245, 295, 353, 409, 630, 762, 1086
Bsp68I TCGCGA 1 cut(s) 582
BspACI CCGC 3 cut(s) 226, 228, 707
BspANI GGCC 1 cut(s) 367
BspCNI CTCAG 1 cut(s) 834
BspEI TCCGGA 1 cut(s) 460
BspFNI CGCG 3 cut(s) 218, 228, 582
BspLI GGNNCC 3 cut(s) 355, 367, 939
BspPI GGATC 4 cut(s) 303, 348, 361, 757
BspTNI GGTCTC 2 cut(s) 517, 617
BsrI ACTGG 3 cut(s) 572, 638, 740
BssECI CCNNGG 2 cut(s) 226, 416
BssMI GATC 9 cut(s) 59, 190, 245, 295, 353, 409, 630, 762, 1086
BssNI GRCGYC 1 cut(s) 439
Bst2UI CCWGG 2 cut(s) 293, 417
Bst4CI ACNGT 1 cut(s) 853
BstACI GRCGYC 1 cut(s) 439
BstBAI YACGTR 1 cut(s) 533
BstC8I GCNNGC 1 cut(s) 397
BstDEI CTNAG 3 cut(s) 331, 842, 1002
BstDSI CCRYGG 1 cut(s) 226
BstF5I GGATG 1 cut(s) 1024
BstFNI CGCG 3 cut(s) 218, 228, 582
BstHHI GCGC 1 cut(s) 732
BstKTI GATC 9 cut(s) 62, 193, 248, 298, 356, 412, 633, 765, 1089
BstMAI GTCTC 3 cut(s) 86, 517, 617
BstMBI GATC 9 cut(s) 59, 190, 245, 295, 353, 409, 630, 762, 1086
BstMWI GCNNNNNNNGC 1 cut(s) 373
BstNI CCWGG 2 cut(s) 293, 417
BstSCI CCNGG 2 cut(s) 291, 415
BstSFI CTRYAG 2 cut(s) 657, 975
BstSLI GKGCMC 2 cut(s) 369, 423
BstUI CGCG 3 cut(s) 218, 228, 582
BstV1I GCAGC 1 cut(s) 127
BstV2I GAAGAC 1 cut(s) 333
BstX2I RGATCY 2 cut(s) 245, 353
BstYI RGATCY 2 cut(s) 245, 353
BsuRI GGCC 1 cut(s) 367
BtgI CCRYGG 1 cut(s) 226
BtsCI GGATG 1 cut(s) 1024
BtsIMutI CAGTG 1 cut(s) 747
BtuMI TCGCGA 1 cut(s) 582
Cac8I GCNNGC 1 cut(s) 397
CfoI GCGC 1 cut(s) 732
Cfr13I GGNCC 2 cut(s) 365, 366
Cfr42I CCGCGG 1 cut(s) 229
CseI GACGC 2 cut(s) 224, 428
Csp6I GTAC 4 cut(s) 474, 548, 869, 980
CviAII CATG 2 cut(s) 478, 964
CviJI RGCY 8 cut(s) 118, 367, 399, 501, 656, 662, 962, 974
CviKI_1 RGCY 8 cut(s) 118, 367, 399, 501, 656, 662, 962, 974
CviQI GTAC 4 cut(s) 474, 548, 869, 980
DdeI CTNAG 3 cut(s) 331, 842, 1002
DpnI GATC 9 cut(s) 61, 192, 247, 297, 355, 411, 632, 764, 1088
DpnII GATC 9 cut(s) 59, 190, 245, 295, 353, 409, 630, 762, 1086
DraI TTTAAA 1 cut(s) 174
Eco24I GRGCYC 2 cut(s) 369, 503
Eco31I GGTCTC 2 cut(s) 517, 617
Eco57I CTGAAG 1 cut(s) 573
Eco72I CACGTG 1 cut(s) 533
EcoO109I RGGNCCY 1 cut(s) 365
EcoRII CCWGG 2 cut(s) 291, 415
EcoT22I ATGCAT 1 cut(s) 993
EcoT38I GRGCYC 2 cut(s) 369, 503
Esp3I CGTCTC 1 cut(s) 86
FaeI CATG 2 cut(s) 481, 967
FalI AAGNNNNNCTT 2 cut(s) 232, 264
FaqI GGGAC 1 cut(s) 166
FatI CATG 2 cut(s) 477, 963
Fnu4HI GCNGC 1 cut(s) 116
FokI GGATG 1 cut(s) 1031
FriOI GRGCYC 2 cut(s) 369, 503
Fsp4HI GCNGC 1 cut(s) 116
GlaI GCGC 1 cut(s) 731
GluI GCNGC 1 cut(s) 116
HaeIII GGCC 1 cut(s) 367
HapII CCGG 4 cut(s) 74, 461, 545, 861
HgaI GACGC 2 cut(s) 224, 428
HhaI GCGC 1 cut(s) 732
Hin1I GRCGYC 1 cut(s) 439
Hin1II CATG 2 cut(s) 481, 967
Hin6I GCGC 1 cut(s) 730
HinP1I GCGC 1 cut(s) 730
HinfI GANTC 4 cut(s) 222, 457, 712, 943
HpaII CCGG 4 cut(s) 74, 461, 545, 861
HphI GGTGA 3 cut(s) 242, 290, 1018
Hpy166II GTNNAC 1 cut(s) 596
Hpy188I TCNGA 6 cut(s) 64, 358, 409, 843, 942, 1028
Hpy188III TCNNGA 8 cut(s) 50, 206, 443, 461, 581, 614, 716, 1084
Hpy8I GTNNAC 1 cut(s) 596
Hpy99I CGWCG 3 cut(s) 444, 474, 1032
HpyAV CCTTC 2 cut(s) 126, 458
HpyCH4III ACNGT 1 cut(s) 853
HpyCH4IV ACGT 3 cut(s) 66, 472, 532
HpyCH4V TGCA 4 cut(s) 4, 319, 530, 991
HpyF10VI GCNNNNNNNGC 1 cut(s) 373
HpyF3I CTNAG 3 cut(s) 331, 842, 1002
HpySE526I ACGT 3 cut(s) 66, 472, 532
Hsp92I GRCGYC 1 cut(s) 439
Hsp92II CATG 2 cut(s) 481, 967
HspAI GCGC 1 cut(s) 730
Kpn2I TCCGGA 1 cut(s) 460
KspI CCGCGG 1 cut(s) 229
Kzo9I GATC 9 cut(s) 59, 190, 245, 295, 353, 409, 630, 762, 1086
LmnI GCTCC 1 cut(s) 653
Lsp1109I GCAGC 1 cut(s) 127
MaeII ACGT 3 cut(s) 66, 472, 532
MaeIII GTNAC 1 cut(s) 1081
MalI GATC 9 cut(s) 61, 192, 247, 297, 355, 411, 632, 764, 1088
MboI GATC 9 cut(s) 59, 190, 245, 295, 353, 409, 630, 762, 1086
MboII GAAGA 8 cut(s) 245, 303, 335, 338, 613, 625, 731, 775
MflI RGATCY 2 cut(s) 245, 353
MhlI GDGCHC 3 cut(s) 369, 423, 503
MluCI AATT 4 cut(s) 287, 430, 883, 901
MlyI GAGTC 1 cut(s) 952
MmeI TCCRAC 2 cut(s) 857, 1051
MnlI CCTC 7 cut(s) 114, 339, 415, 847, 1044, 1056, 1059
Mph1103I ATGCAT 1 cut(s) 993
MroI TCCGGA 1 cut(s) 460
MroXI GAANNNNTTC 2 cut(s) 99, 804
MseI TTAA 1 cut(s) 173
MslI CAYNNNNRTG 1 cut(s) 90
MspA1I CMGCKG 1 cut(s) 228
MspI CCGG 4 cut(s) 74, 461, 545, 861
MspR9I CCNGG 2 cut(s) 293, 417
MvaI CCWGG 2 cut(s) 293, 417
MvnI CGCG 3 cut(s) 218, 228, 582
MwoI GCNNNNNNNGC 1 cut(s) 373
NdeII GATC 9 cut(s) 59, 190, 245, 295, 353, 409, 630, 762, 1086
NlaIII CATG 2 cut(s) 481, 967
NlaIV GGNNCC 3 cut(s) 355, 367, 939
NmeAIII GCCGAG 1 cut(s) 415
NmuCI GTSAC 1 cut(s) 1081
NruI TCGCGA 1 cut(s) 582
NsiI ATGCAT 1 cut(s) 993
PdmI GAANNNNTTC 2 cut(s) 99, 804
PfeI GAWTC 3 cut(s) 222, 457, 712
PflFI GACNNNGTC 1 cut(s) 1079
PflMI CCANNNNNTGG 1 cut(s) 746
PfoI TCCNGGA 1 cut(s) 291
PkrI GCNGC 1 cut(s) 117
PleI GAGTC 1 cut(s) 951
PmaCI CACGTG 1 cut(s) 533
PmlI CACGTG 1 cut(s) 533
PpsI GAGTC 1 cut(s) 951
Ppu21I YACGTR 1 cut(s) 533
Psp6I CCWGG 2 cut(s) 291, 415
PspCI CACGTG 1 cut(s) 533
PspGI CCWGG 2 cut(s) 291, 415
PspN4I GGNNCC 3 cut(s) 355, 367, 939
PspOMI GGGCCC 1 cut(s) 365
PspPI GGNCC 2 cut(s) 365, 366
PsuI RGATCY 2 cut(s) 245, 353
PsyI GACNNNGTC 1 cut(s) 1079
RruI TCGCGA 1 cut(s) 582
RsaI GTAC 4 cut(s) 475, 549, 870, 981
RsaNI GTAC 4 cut(s) 474, 548, 869, 980
RseI CAYNNNNRTG 1 cut(s) 90
SacII CCGCGG 1 cut(s) 229
SaqAI TTAA 1 cut(s) 173
SatI GCNGC 1 cut(s) 116
Sau3AI GATC 9 cut(s) 59, 190, 245, 295, 353, 409, 630, 762, 1086
Sau96I GGNCC 2 cut(s) 365, 366
ScaI AGTACT 1 cut(s) 981
SchI GAGTC 1 cut(s) 952
ScrFI CCNGG 2 cut(s) 293, 417
SduI GDGCHC 3 cut(s) 369, 423, 503
SfcI CTRYAG 2 cut(s) 657, 975
Sfr303I CCGCGG 1 cut(s) 229
SgrBI CCGCGG 1 cut(s) 229
SmiMI CAYNNNNRTG 1 cut(s) 90
SmlI CTYRAG 1 cut(s) 105
SmoI CTYRAG 1 cut(s) 105
Sse9I AATT 4 cut(s) 287, 430, 883, 901
SsiI CCGC 3 cut(s) 226, 228, 707
SspI AATATT 1 cut(s) 198
StyD4I CCNGG 2 cut(s) 291, 415
TaaI ACNGT 1 cut(s) 853
TaiI ACGT 3 cut(s) 69, 475, 535
TaqI TCGA 6 cut(s) 130, 258, 412, 442, 497, 615
TasI AATT 4 cut(s) 287, 430, 883, 901
TatI WGTACW 1 cut(s) 979
TfiI GAWTC 3 cut(s) 222, 457, 712
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TscAI CASTG 1 cut(s) 747
TseFI GTSAC 1 cut(s) 1081
TseI GCWGC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 1081
TspDTI ATGAA 3 cut(s) 15, 635, 775
TspGWI ACGGA 1 cut(s) 544
TspRI CASTG 1 cut(s) 747
Tth111I GACNNNGTC 1 cut(s) 1079
Van91I CCANNNNNTGG 1 cut(s) 746
XapI RAATTY 2 cut(s) 287, 430
XmnI GAANNNNTTC 2 cut(s) 99, 804
ZrmI AGTACT 1 cut(s) 981
Zsp2I ATGCAT 1 cut(s) 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.