ATMG00270

Belongs to the complex I subunit 6 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Mt
OG0017525
Physical Location & Seq
Reverse (-)
76642 .. 77259
618 bp
Loading structure...
UTR
Exon/CDS
Intron
ATMG00270.1

Sequence Viewer

Length: 618 bp
ATGATACTTTCTGTTTTGTCGAGCCCTGCTTTGGTCTCTGGTTTGATGGTTGCACGTGCTAAAAATCCGGTACATTCCGTTTTGTTTCCCATCCCAGTCTTTCGCGACACTTCAGGTTTACTTCTTTTGTTAGGTCTCGACTTCTTCGCTATGATCTTCCCAGTAGTTCATATAGGAGCTATAGCCGTTTCATTCCTTTTCGTTGTTATGATGTTCCATATTCAAATAGCGGAGATTCACGAAGAAGTATTGCGCTATTTACCAGTGAGTGGGATTATTGGACTGATCTTTTGGTGGGAAATGTTTTTCATTTTAGATAATGAAAGCATTCCATTACTACCAACCCAAAGAAATACGACCTCTCTTAGATATACGGTTTATGCCGGAAAGGTACGAAGTTGGACTAATTTGGAAACATTGGGCAATTTACTTTATACCTACTATTCTGTCTGGTTTTTGGTTCCTAGTCTTATTTTATTAGTAGCCATGATTGGGGCTATAGTACTGACTATGCATAGGACTACTAAGGTGAAAAGACAGGATGTATTCCGACGAAATGCTATTGATTTTAGGAGGACTATAATGAGGAGGACGACTGACCCACTCACGATCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko04723 ko05012 map00190 map01100 map04714 map04723 map05012
Pfam Domains
Protein Families
Oxidored_q3

Protein Analysis

205

Amino Acids

23.49

Weight (kDa)

9.9

Isoelectric Point (pI)

46.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxidored_q3 PF00499 13 - 169 1.1e-29 NADH-ubiquinone/plastoquinone oxidoreductase chain 6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017525)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07681 AT2G07718 AT2G07773 ATMG00270 ATMG00590 ATMG00890 ATMG00910
fragaria_vesca FvH4_2g28560
pyrus_communis pycom12401g00050
rosa_chinensis RchiOBHm_MTg0498991
rosa_laevigata RLG00000000420
rosa_samantha Rh1BG018400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 269
AccII CGCG 1 cut(s) 105
AciI CCGC 1 cut(s) 230
AcuI CTGAAG 1 cut(s) 96
AcvI CACGTG 1 cut(s) 56
AfaI GTAC 3 cut(s) 72, 393, 504
AfiI CCNNNNNNNGG 3 cut(s) 31, 269, 492
AgsI TTSAA 1 cut(s) 224
AluBI AGCT 1 cut(s) 179
AluI AGCT 1 cut(s) 179
Alw26I GTCTC 2 cut(s) 40, 140
ArsI GACNNNNNNTTYG 2 cut(s) 273, 305
Asp700I GAANNNNTTC 1 cut(s) 327
AspLEI GCGC 1 cut(s) 255
AsuHPI GGTGA 1 cut(s) 541
BanII GRGCYC 1 cut(s) 26
BbrPI CACGTG 1 cut(s) 56
BccI CCATC 2 cut(s) 40, 98
BceAI ACGGC 1 cut(s) 170
BcoDI GTCTC 2 cut(s) 40, 140
BfaI CTAG 1 cut(s) 465
BfmI CTRYAG 2 cut(s) 180, 498
BmcAI AGTACT 1 cut(s) 504
BmiI GGNNCC 1 cut(s) 462
BmrI ACTGGG 2 cut(s) 89, 155
BmuI ACTGGG 2 cut(s) 89, 155
BsaAI YACGTR 1 cut(s) 56
BsaI GGTCTC 2 cut(s) 40, 140
BsaWI WCCGGW 1 cut(s) 67
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 269, 492
Bse1I ACTGG 3 cut(s) 95, 161, 263
BseGI GGATG 2 cut(s) 90, 547
BseLI CCNNNNNNNGG 3 cut(s) 31, 269, 492
BseNI ACTGG 3 cut(s) 95, 161, 263
BseRI GAGGAG 1 cut(s) 601
Bsh1236I CGCG 1 cut(s) 105
BsiSI CCGG 2 cut(s) 68, 384
BslI CCNNNNNNNGG 3 cut(s) 31, 269, 492
BsmAI GTCTC 2 cut(s) 40, 140
BsmI GAATGC 1 cut(s) 327
Bso31I GGTCTC 2 cut(s) 40, 140
Bsp1286I GDGCHC 1 cut(s) 26
Bsp143I GATC 3 cut(s) 153, 285, 609
Bsp68I TCGCGA 1 cut(s) 105
BspACI CCGC 1 cut(s) 230
BspFNI CGCG 1 cut(s) 105
BspLI GGNNCC 1 cut(s) 462
BspTNI GGTCTC 2 cut(s) 40, 140
BsrI ACTGG 3 cut(s) 95, 161, 263
BssMI GATC 3 cut(s) 153, 285, 609
Bst4CI ACNGT 1 cut(s) 376
BstBAI YACGTR 1 cut(s) 56
BstDEI CTNAG 2 cut(s) 365, 525
BstF5I GGATG 2 cut(s) 90, 547
BstFNI CGCG 1 cut(s) 105
BstHHI GCGC 1 cut(s) 255
BstKTI GATC 3 cut(s) 156, 288, 612
BstMAI GTCTC 2 cut(s) 40, 140
BstMBI GATC 3 cut(s) 153, 285, 609
BstSFI CTRYAG 2 cut(s) 180, 498
BstUI CGCG 1 cut(s) 105
BtsCI GGATG 2 cut(s) 90, 547
BtsIMutI CAGTG 1 cut(s) 270
BtuMI TCGCGA 1 cut(s) 105
CfoI GCGC 1 cut(s) 255
Csp6I GTAC 3 cut(s) 71, 392, 503
CviAII CATG 1 cut(s) 487
CviJI RGCY 5 cut(s) 24, 179, 185, 485, 497
CviKI_1 RGCY 5 cut(s) 24, 179, 185, 485, 497
CviQI GTAC 3 cut(s) 71, 392, 503
DdeI CTNAG 2 cut(s) 365, 525
DpnI GATC 3 cut(s) 155, 287, 611
DpnII GATC 3 cut(s) 153, 285, 609
Eco24I GRGCYC 1 cut(s) 26
Eco31I GGTCTC 2 cut(s) 40, 140
Eco57I CTGAAG 1 cut(s) 96
Eco72I CACGTG 1 cut(s) 56
EcoT22I ATGCAT 1 cut(s) 516
EcoT38I GRGCYC 1 cut(s) 26
FaeI CATG 1 cut(s) 490
FatI CATG 1 cut(s) 486
FokI GGATG 2 cut(s) 77, 554
FriOI GRGCYC 1 cut(s) 26
FspBI CTAG 1 cut(s) 465
GlaI GCGC 1 cut(s) 254
HapII CCGG 2 cut(s) 68, 384
HhaI GCGC 1 cut(s) 255
Hin1II CATG 1 cut(s) 490
Hin6I GCGC 1 cut(s) 253
HinP1I GCGC 1 cut(s) 253
HinfI GANTC 1 cut(s) 235
HpaII CCGG 2 cut(s) 68, 384
HphI GGTGA 1 cut(s) 541
Hpy166II GTNNAC 1 cut(s) 119
Hpy188I TCNGA 1 cut(s) 551
Hpy188III TCNNGA 4 cut(s) 104, 137, 239, 607
Hpy8I GTNNAC 1 cut(s) 119
Hpy99I CGWCG 1 cut(s) 555
HpyCH4III ACNGT 1 cut(s) 376
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 2 cut(s) 53, 514
HpyF3I CTNAG 2 cut(s) 365, 525
HpySE526I ACGT 1 cut(s) 55
Hsp92II CATG 1 cut(s) 490
HspAI GCGC 1 cut(s) 253
Kzo9I GATC 3 cut(s) 153, 285, 609
LmnI GCTCC 1 cut(s) 176
MaeI CTAG 1 cut(s) 465
MaeII ACGT 1 cut(s) 55
MalI GATC 3 cut(s) 155, 287, 611
MboI GATC 3 cut(s) 153, 285, 609
MboII GAAGA 3 cut(s) 136, 148, 254
MhlI GDGCHC 1 cut(s) 26
MluCI AATT 2 cut(s) 406, 424
MmeI TCCRAC 2 cut(s) 380, 574
MnlI CCTC 4 cut(s) 370, 567, 579, 582
Mph1103I ATGCAT 1 cut(s) 516
MroXI GAANNNNTTC 1 cut(s) 327
MspI CCGG 2 cut(s) 68, 384
Mva1269I GAATGC 1 cut(s) 327
MvnI CGCG 1 cut(s) 105
NdeII GATC 3 cut(s) 153, 285, 609
NlaIII CATG 1 cut(s) 490
NlaIV GGNNCC 1 cut(s) 462
NruI TCGCGA 1 cut(s) 105
NsiI ATGCAT 1 cut(s) 516
PctI GAATGC 1 cut(s) 327
PdmI GAANNNNTTC 1 cut(s) 327
PfeI GAWTC 1 cut(s) 235
PflMI CCANNNNNTGG 1 cut(s) 269
PmaCI CACGTG 1 cut(s) 56
PmlI CACGTG 1 cut(s) 56
Ppu21I YACGTR 1 cut(s) 56
PspCI CACGTG 1 cut(s) 56
PspN4I GGNNCC 1 cut(s) 462
RruI TCGCGA 1 cut(s) 105
RsaI GTAC 3 cut(s) 72, 393, 504
RsaNI GTAC 3 cut(s) 71, 392, 503
Sau3AI GATC 3 cut(s) 153, 285, 609
ScaI AGTACT 1 cut(s) 504
SduI GDGCHC 1 cut(s) 26
SetI ASST 8 cut(s) 58, 118, 136, 181, 362, 393, 440, 531
SfcI CTRYAG 2 cut(s) 180, 498
Sse9I AATT 2 cut(s) 406, 424
SsiI CCGC 1 cut(s) 230
SspMI CTAG 1 cut(s) 465
TaaI ACNGT 1 cut(s) 376
TaiI ACGT 1 cut(s) 58
TaqI TCGA 2 cut(s) 20, 138
TasI AATT 2 cut(s) 406, 424
TatI WGTACW 1 cut(s) 502
TfiI GAWTC 1 cut(s) 235
TscAI CASTG 1 cut(s) 270
TspDTI ATGAA 4 cut(s) 158, 180, 298, 336
TspGWI ACGGA 1 cut(s) 67
TspRI CASTG 1 cut(s) 270
Van91I CCANNNNNTGG 1 cut(s) 269
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 1 cut(s) 465
ZrmI AGTACT 1 cut(s) 504
Zsp2I ATGCAT 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.