AT2G07815

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0018763
Physical Location & Seq
Reverse (-)
3443688 .. 3446183
2496 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G07815.1

Sequence Viewer

Length: 840 bp
ATGGTATCAGAATGCCTCTTCCGAAATAGAAGGTTATTCGGCTTGTTCGTGAAAGCACAGAGGAATTCAAAGCATTGTAGCTGTTCCGAGGAAGTTCAATTCCAGAGATGGCTAGGGAGCAAAGAAGTAGCCGAGCCTAGGACGAAGGCACGAAATGCTTTCTCGCCAATGAATGAAGAAATGACCCGCCGGATTCGCTCGGAGACTAACTCACTCGTCTCGTTCATGTATTTACTCGCAGCATTCGCAGCAAACTCGCAGGCAGGAGAGACCTTGAGTCCAGGCTCAGGAATCGACTGGTTCCGAGCGGACTCGGGCAGCTGCTGCTTGGATTATCGTAGAATAAGAGGAGCCGTCTTAGGAAAGGAAATGACTCAACTTCAAAAAAAAAAAGACAGATGCCGCCTACCTACTCGTGCTCGTAGCTCGATCGGAGGTCAAGAGCCGTGGTCCGGCGGAAAAACGGAAGTCCGCCTTCTCTTCTTTAGAGAAGCCAAACTCGAACGGATAGAGCAGATGGTCCAACTACATAACTTTTTCTTTTTTATTATTTTTATGGTCGTGCCTTGTGGCACGGCAGCACCCGTACTATTGAAATGGTTCGTCAGTAGAGATGTTCCCACGGGTGCCCCTTTTTCCAATGGTACTATAATTCCTATTCCTATCTCTTCATTCCCTCTTTTGGTCTATCTACATTCAAGGAAAATCATACGCTCCATGGACGGAGCAAAAAGTGGAGTCTTGCACGCGATAGGTCAGCGAAGCGTGAGCGGGCGCGGAGAAGGAAAGGCCAAACACTTCGGCCGAACGGGAATGAGCAACGACGAAATGACAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

279

Amino Acids

31.43

Weight (kDa)

10.2

Isoelectric Point (pI)

48.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018763)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07815 ATMG00180
prunus_persica Prupe.5G026600_v2.0.a1
pyrus_communis pycom12401g00060
rosa_chinensis RchiOBHm_MTg0498431
rosa_laevigata RLG00000000022 RLG00000000465 RLG00000000504
rosa_samantha Rh1BG019000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 626
AccBSI CCGCTC 2 cut(s) 308, 771
AccII CGCG 2 cut(s) 749, 777
AciI CCGC 7 cut(s) 187, 308, 403, 456, 472, 771, 777
AcoI YGGCCR 1 cut(s) 802
AcsI RAATTY 1 cut(s) 64
AfaI GTAC 2 cut(s) 588, 646
AfiI CCNNNNNNNGG 4 cut(s) 138, 287, 452, 682
AgsI TTSAA 5 cut(s) 69, 98, 383, 595, 699
AhdI GACNNNNNGTC 1 cut(s) 276
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 3 cut(s) 81, 321, 426
AluI AGCT 3 cut(s) 81, 321, 426
Alw21I GWGCWC 1 cut(s) 421
Alw26I GTCTC 3 cut(s) 197, 223, 263
AlwNI CAGNNNCTG 1 cut(s) 324
Ama87I CYCGRG 1 cut(s) 313
AoxI GGCC 2 cut(s) 789, 802
ApeKI GCWGC 6 cut(s) 239, 248, 318, 321, 324, 578
ApoI RAATTY 1 cut(s) 64
Asp700I GAANNNNTTC 1 cut(s) 599
AspA2I CCTAGG 1 cut(s) 137
AspLEI GCGC 1 cut(s) 777
AspS9I GGNCC 2 cut(s) 450, 520
AvaI CYCGRG 1 cut(s) 313
AvaII GGWCC 2 cut(s) 450, 520
AvrII CCTAGG 1 cut(s) 137
BaeGI GKGCMC 1 cut(s) 631
BanI GGYRCC 1 cut(s) 626
BauI CACGAG 1 cut(s) 414
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 6 cut(s) 251, 260, 308, 311, 330, 590
BccI CCATC 2 cut(s) 102, 511
BceAI ACGGC 3 cut(s) 338, 430, 591
BcgI CGANNNNNNTGC 2 cut(s) 237, 271
BciT130I CCWGG 1 cut(s) 282
BcoDI GTCTC 3 cut(s) 197, 223, 263
BfaI CTAG 2 cut(s) 113, 138
BisI GCNGC 7 cut(s) 240, 249, 319, 322, 325, 403, 579
BlnI CCTAGG 1 cut(s) 137
BlsI GCNGC 7 cut(s) 241, 250, 320, 323, 326, 404, 580
Bme1390I CCNGG 1 cut(s) 282
Bme18I GGWCC 2 cut(s) 450, 520
BmeRI GACNNNNNGTC 1 cut(s) 276
BmeT110I CYCGRG 1 cut(s) 313
BmgT120I GGNCC 2 cut(s) 450, 520
BmiI GGNNCC 3 cut(s) 302, 352, 628
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 1 cut(s) 389
BplI GAGNNNNNCTC 2 cut(s) 194, 226
Bpu10I CCTNAGC 1 cut(s) 286
BpuEI CTTGAG 1 cut(s) 295
BsaI GGTCTC 1 cut(s) 263
BsaJI CCNNGG 5 cut(s) 87, 137, 446, 621, 717
Bsc4I CCNNNNNNNGG 4 cut(s) 138, 287, 452, 682
Bse1I ACTGG 1 cut(s) 302
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 5 cut(s) 87, 137, 446, 621, 717
BseLI CCNNNNNNNGG 4 cut(s) 138, 287, 452, 682
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 1 cut(s) 302
BseRI GAGGAG 1 cut(s) 363
BseSI GKGCMC 1 cut(s) 631
BseX3I CGGCCG 1 cut(s) 802
BseXI GCAGC 6 cut(s) 251, 260, 308, 311, 330, 590
Bsh1236I CGCG 2 cut(s) 749, 777
Bsh1285I CGRYCG 2 cut(s) 432, 805
BshFI GGCC 2 cut(s) 791, 804
BshNI GGYRCC 1 cut(s) 626
BsiEI CGRYCG 2 cut(s) 432, 805
BsiHKAI GWGCWC 1 cut(s) 421
BsiHKCI CYCGRG 1 cut(s) 313
BsiSI CCGG 2 cut(s) 190, 453
BslI CCNNNNNNNGG 4 cut(s) 138, 287, 452, 682
BsmAI GTCTC 3 cut(s) 197, 223, 263
BsmBI CGTCTC 1 cut(s) 223
BsmI GAATGC 2 cut(s) 17, 242
BsnI GGCC 2 cut(s) 791, 804
Bso31I GGTCTC 1 cut(s) 263
BsoBI CYCGRG 1 cut(s) 313
Bsp1286I GDGCHC 2 cut(s) 421, 631
Bsp143I GATC 1 cut(s) 429
Bsp19I CCATGG 1 cut(s) 717
BspACI CCGC 7 cut(s) 187, 308, 403, 456, 472, 771, 777
BspANI GGCC 2 cut(s) 791, 804
BspCNI CTCAG 1 cut(s) 299
BspFNI CGCG 2 cut(s) 749, 777
BspLI GGNNCC 3 cut(s) 302, 352, 628
BspT107I GGYRCC 1 cut(s) 626
BspTNI GGTCTC 1 cut(s) 263
BsrBI CCGCTC 2 cut(s) 308, 771
BsrI ACTGG 1 cut(s) 302
BssECI CCNNGG 5 cut(s) 87, 137, 446, 621, 717
BssMI GATC 1 cut(s) 429
BssSI CACGAG 1 cut(s) 414
BssT1I CCWWGG 2 cut(s) 137, 717
Bst2BI CACGAG 1 cut(s) 414
Bst2UI CCWGG 1 cut(s) 282
Bst6I CTCTTC 3 cut(s) 23, 485, 673
BstAPI GCANNNNNTGC 2 cut(s) 155, 324
BstC8I GCNNGC 3 cut(s) 261, 747, 773
BstDEI CTNAG 2 cut(s) 286, 358
BstDSI CCRYGG 3 cut(s) 446, 621, 717
BstFNI CGCG 2 cut(s) 749, 777
BstHHI GCGC 1 cut(s) 777
BstKTI GATC 1 cut(s) 432
BstMAI GTCTC 3 cut(s) 197, 223, 263
BstMBI GATC 1 cut(s) 429
BstMCI CGRYCG 2 cut(s) 432, 805
BstMWI GCNNNNNNNGC 5 cut(s) 155, 195, 245, 248, 324
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 280
BstSLI GKGCMC 1 cut(s) 631
BstUI CGCG 2 cut(s) 749, 777
BstV1I GCAGC 6 cut(s) 251, 260, 308, 311, 330, 590
BstZI CGGCCG 1 cut(s) 802
BsuRI GGCC 2 cut(s) 791, 804
BtgI CCRYGG 3 cut(s) 446, 621, 717
Cac8I GCNNGC 3 cut(s) 261, 747, 773
CaiI CAGNNNCTG 1 cut(s) 324
CfoI GCGC 1 cut(s) 777
Cfr13I GGNCC 2 cut(s) 450, 520
Csp6I GTAC 2 cut(s) 587, 645
CspCI CAANNNNNGTGG 2 cut(s) 428, 463
CviAII CATG 2 cut(s) 226, 718
CviQI GTAC 2 cut(s) 587, 645
DdeI CTNAG 2 cut(s) 286, 358
DpnI GATC 1 cut(s) 431
DpnII GATC 1 cut(s) 429
DriI GACNNNNNGTC 1 cut(s) 276
EaeI YGGCCR 1 cut(s) 802
EagI CGGCCG 1 cut(s) 802
Eam1104I CTCTTC 3 cut(s) 23, 485, 673
Eam1105I GACNNNNNGTC 1 cut(s) 276
EarI CTCTTC 3 cut(s) 23, 485, 673
EciI GGCGGA 2 cut(s) 461, 471
EclXI CGGCCG 1 cut(s) 802
Eco130I CCWWGG 2 cut(s) 137, 717
Eco31I GGTCTC 1 cut(s) 263
Eco47I GGWCC 2 cut(s) 450, 520
Eco52I CGGCCG 1 cut(s) 802
Eco88I CYCGRG 1 cut(s) 313
EcoRI GAATTC 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 280
EcoT14I CCWWGG 2 cut(s) 137, 717
ErhI CCWWGG 2 cut(s) 137, 717
Esp3I CGTCTC 1 cut(s) 223
FaeI CATG 2 cut(s) 229, 721
FaiI YATR 6 cut(s) 227, 531, 557, 650, 710, 719
FalI AAGNNNNNCTT 2 cut(s) 459, 491
FatI CATG 2 cut(s) 225, 717
FauI CCCGC 2 cut(s) 194, 764
Fnu4HI GCNGC 7 cut(s) 240, 249, 319, 322, 325, 403, 579
Fsp4HI GCNGC 7 cut(s) 240, 249, 319, 322, 325, 403, 579
FspBI CTAG 2 cut(s) 113, 138
GlaI GCGC 1 cut(s) 776
GluI GCNGC 7 cut(s) 240, 249, 319, 322, 325, 403, 579
HaeIII GGCC 2 cut(s) 791, 804
HapII CCGG 2 cut(s) 190, 453
HhaI GCGC 1 cut(s) 777
Hin1II CATG 2 cut(s) 229, 721
Hin6I GCGC 1 cut(s) 775
HinP1I GCGC 1 cut(s) 775
HinfI GANTC 6 cut(s) 193, 277, 291, 311, 373, 738
HpaII CCGG 2 cut(s) 190, 453
Hpy188I TCNGA 6 cut(s) 10, 23, 88, 202, 305, 434
Hpy188III TCNNGA 4 cut(s) 49, 103, 288, 440
Hpy99I CGWCG 1 cut(s) 827
HpyAV CCTTC 4 cut(s) 24, 139, 485, 776
HpyCH4V TGCA 1 cut(s) 745
HpyF10VI GCNNNNNNNGC 5 cut(s) 155, 195, 245, 248, 324
HpyF3I CTNAG 2 cut(s) 286, 358
Hsp92II CATG 2 cut(s) 229, 721
HspAI GCGC 1 cut(s) 775
Kzo9I GATC 1 cut(s) 429
LmnI GCTCC 4 cut(s) 117, 350, 719, 725
LpnPI CCDG 9 cut(s) 116, 203, 245, 249, 267, 273, 283, 294, 466
Lsp1109I GCAGC 6 cut(s) 251, 260, 308, 311, 330, 590
LweI GCATC 1 cut(s) 389
MaeI CTAG 2 cut(s) 113, 138
MalI GATC 1 cut(s) 431
MbiI CCGCTC 2 cut(s) 308, 771
MboI GATC 1 cut(s) 429
MboII GAAGA 4 cut(s) 10, 188, 472, 660
MhlI GDGCHC 2 cut(s) 421, 631
MluCI AATT 3 cut(s) 64, 98, 651
MlyI GAGTC 4 cut(s) 286, 305, 367, 747
MmeI TCCRAC 1 cut(s) 547
MnlI CCTC 6 cut(s) 26, 54, 82, 341, 428, 687
MroXI GAANNNNTTC 1 cut(s) 599
MspA1I CMGCKG 1 cut(s) 321
MspI CCGG 2 cut(s) 190, 453
MspR9I CCNGG 1 cut(s) 282
Mva1269I GAATGC 2 cut(s) 17, 242
MvaI CCWGG 1 cut(s) 282
MvnI CGCG 2 cut(s) 749, 777
MwoI GCNNNNNNNGC 5 cut(s) 155, 195, 245, 248, 324
NcoI CCATGG 1 cut(s) 717
NdeII GATC 1 cut(s) 429
NlaIII CATG 2 cut(s) 229, 721
NlaIV GGNNCC 3 cut(s) 302, 352, 628
NmeAIII GCCGAG 1 cut(s) 157
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PctI GAATGC 2 cut(s) 17, 242
PdmI GAANNNNTTC 1 cut(s) 599
PfeI GAWTC 2 cut(s) 193, 291
PkrI GCNGC 7 cut(s) 241, 250, 320, 323, 326, 404, 580
Ple19I CGATCG 1 cut(s) 432
PleI GAGTC 4 cut(s) 285, 305, 367, 746
PpsI GAGTC 4 cut(s) 285, 305, 367, 746
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 3 cut(s) 302, 352, 628
PspPI GGNCC 2 cut(s) 450, 520
PstNI CAGNNNCTG 1 cut(s) 324
PvuI CGATCG 1 cut(s) 432
PvuII CAGCTG 1 cut(s) 321
RsaI GTAC 2 cut(s) 588, 646
RsaNI GTAC 2 cut(s) 587, 645
SatI GCNGC 7 cut(s) 240, 249, 319, 322, 325, 403, 579
Sau3AI GATC 1 cut(s) 429
Sau96I GGNCC 2 cut(s) 450, 520
SchI GAGTC 4 cut(s) 286, 305, 367, 747
ScrFI CCNGG 1 cut(s) 282
SduI GDGCHC 2 cut(s) 421, 631
SetI ASST 8 cut(s) 35, 83, 275, 323, 412, 428, 439, 757
SfaNI GCATC 1 cut(s) 389
SinI GGWCC 2 cut(s) 450, 520
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
Sse9I AATT 3 cut(s) 64, 98, 651
SsiI CCGC 7 cut(s) 187, 308, 403, 456, 472, 771, 777
SspMI CTAG 2 cut(s) 113, 138
StyD4I CCNGG 1 cut(s) 280
StyI CCWWGG 2 cut(s) 137, 717
TaqI TCGA 3 cut(s) 294, 428, 501
TasI AATT 3 cut(s) 64, 98, 651
TauI GCSGC 1 cut(s) 405
TfiI GAWTC 2 cut(s) 193, 291
TseI GCWGC 6 cut(s) 239, 248, 318, 321, 324, 578
TspDTI ATGAA 4 cut(s) 185, 189, 214, 660
TspGWI ACGGA 3 cut(s) 479, 520, 738
VpaK11BI GGWCC 2 cut(s) 450, 520
XapI RAATTY 1 cut(s) 64
XmaJI CCTAGG 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 599
XspI CTAG 2 cut(s) 113, 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.