Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0018763

Physical Location & Seq

Genomic Coordinates Reverse (-)

2613185 .. 2614063

Gene Structure 879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG019000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGTCCAACTACATAACTTTTTCTTTTTCATTACTTCCATGGTCGTGCCTTGTGGCACGGCAGCACCCGTACTATTGAAATGGTTTGTCAGTAGAGATGTTCCCACAGGTGCCCCTTCTTCCAATGGTACTATAATTCCTATTCCTATCCCTGCATTCCCTCTTTTGGTCTATATACATTCCAGGAAATTCATACGCTCCATGGACGGAGCAAAAAGTGGAGTCTTGGTCAGAGCAAGCCGCCCTATTTTATTACCAGACATAATTGAGAGAGGCTCAGCCGAAATTAGAGCTAGAAACGCCTTATTTCGTTTCGTTCCCGTTCTTCATTTCCTTCTTCTCGCATACAAGGGGGACTTATCATATTTAGAATCTCTCTGCGGTGTGCTCTGTTTACTATTCTTTCGTACTCTCTTCTCTTTACCACGCGATAGGTCGTCAGCGAAGCGTGAGCGGGCGCGGAGAAGGAAACGCCAAACACTTCGGCCTAACGGGAATGAGCAACGACGAAATGACAAGATGAGGTGCTCCGGGCACCCCCGAAGGGTCGAAGGTTTTGGGCCTGTAGCTTTCCCCGCCCCCCCTTCGTCGGGTGGCGCTTGTGGGGGGCGTGTGCCACCAGAAATCGGGCTTGAAGCTCTCGCCTTACCAACTTGCCGACAGCTGATGGCTGTTGGTCACGACTACTACCAAAAAGCTCCAATGAAGATGAATATTTCACATGGAGGAGTGTGCATCTATATGTTGGGTGTTCTTCTGTCGTGCGACCCGGCGGCTTATGTGCGACCTGTGGCCCACGCCTCCTATTTGTTCAGGGCGGGCGGCGTGAACTCTGATTCGATCCGGGTATTCAATCCCGCCGCTGAGATGCTCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CcmF_C

Protein Analysis

292

Amino Acids

32.21

Weight (kDa)

10.25

Isoelectric Point (pI)

58.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07815 ATMG00180
prunus_persica	Prupe.5G026600_v2.0.a1
pyrus_communis	pycom12401g00060
rosa_chinensis	RchiOBHm_MTg0498431
rosa_laevigata	RLG00000000022 RLG00000000465 RLG00000000504
rosa_samantha	Rh1BG019000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	110, 534
AccBSI	CCGCTC	1 cut(s)	454
AccII	CGCG	2 cut(s)	429, 460
AclWI	GGATC	1 cut(s)	835
AcsI	RAATTY	1 cut(s)	188
AfaI	GTAC	3 cut(s)	72, 130, 409
AfiI	CCNNNNNNNGG	5 cut(s)	166, 544, 589, 590, 626
AgsI	TTSAA	3 cut(s)	79, 635, 853
AjnI	CCWGG	1 cut(s)	182
AluBI	AGCT	5 cut(s)	293, 569, 638, 664, 698
AluI	AGCT	5 cut(s)	293, 569, 638, 664, 698
Alw21I	GWGCWC	2 cut(s)	390, 530
AlwI	GGATC	1 cut(s)	835
AoxI	GGCC	3 cut(s)	485, 560, 792
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	188
AspLEI	GCGC	2 cut(s)	460, 599
AspS9I	GGNCC	3 cut(s)	4, 560, 793
AsuC2I	CCSGG	3 cut(s)	532, 770, 845
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	2 cut(s)	115, 537
BanI	GGYRCC	2 cut(s)	110, 534
Bbv12I	GWGCWC	2 cut(s)	390, 530
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	1 cut(s)	661
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	184
BcnI	CCSGG	3 cut(s)	532, 770, 845
BfaI	CTAG	1 cut(s)	294
BfmI	CTRYAG	1 cut(s)	564
BfoI	RGCGCY	1 cut(s)	600
BisI	GCNGC	5 cut(s)	63, 241, 774, 823, 861
BlpI	GCTNAGC	1 cut(s)	277
BlsI	GCNGC	5 cut(s)	64, 242, 775, 824, 862
Bme1390I	CCNGG	4 cut(s)	184, 532, 770, 845
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	3 cut(s)	4, 560, 793
BmiI	GGNNCC	2 cut(s)	112, 536
BmrFI	CCNGG	4 cut(s)	184, 532, 770, 845
BmsI	GCATC	2 cut(s)	744, 858
BplI	GAGNNNNNCTC	2 cut(s)	260, 292
Bpu1102I	GCTNAGC	1 cut(s)	277
BpuMI	CCSGG	3 cut(s)	532, 770, 845
BsaJI	CCNNGG	2 cut(s)	39, 201
BsaXI	ACNNNNNCTCC	2 cut(s)	213, 243
Bsc4I	CCNNNNNNNGG	5 cut(s)	166, 544, 589, 590, 626
BseBI	CCWGG	1 cut(s)	184
BseDI	CCNNGG	2 cut(s)	39, 201
BseLI	CCNNNNNNNGG	5 cut(s)	166, 544, 589, 590, 626
BseMII	CTCAG	2 cut(s)	291, 855
BseRI	GAGGAG	1 cut(s)	741
BseSI	GKGCMC	2 cut(s)	115, 537
BseXI	GCAGC	1 cut(s)	74
Bsh1236I	CGCG	2 cut(s)	429, 460
BshFI	GGCC	3 cut(s)	487, 562, 794
BshNI	GGYRCC	2 cut(s)	110, 534
BsiHKAI	GWGCWC	2 cut(s)	390, 530
BsiSI	CCGG	3 cut(s)	531, 770, 844
BslFI	GGGAC	1 cut(s)	368
BslI	CCNNNNNNNGG	5 cut(s)	166, 544, 589, 590, 626
BsmFI	GGGAC	1 cut(s)	368
BsmI	GAATGC	1 cut(s)	155
BsnI	GGCC	3 cut(s)	487, 562, 794
Bsp1286I	GDGCHC	4 cut(s)	115, 390, 530, 537
Bsp143I	GATC	1 cut(s)	840
Bsp1720I	GCTNAGC	1 cut(s)	277
Bsp19I	CCATGG	2 cut(s)	39, 201
BspANI	GGCC	3 cut(s)	487, 562, 794
BspCNI	CTCAG	2 cut(s)	290, 856
BspFNI	CGCG	2 cut(s)	429, 460
BspLI	GGNNCC	2 cut(s)	112, 536
BspPI	GGATC	1 cut(s)	835
BspT107I	GGYRCC	2 cut(s)	110, 534
BsrBI	CCGCTC	1 cut(s)	454
BssECI	CCNNGG	2 cut(s)	39, 201
BssMI	GATC	1 cut(s)	840
BssT1I	CCWWGG	2 cut(s)	39, 201
Bst2UI	CCWGG	1 cut(s)	184
Bst6I	CTCTTC	1 cut(s)	419
BstC8I	GCNNGC	3 cut(s)	238, 456, 820
BstDEI	CTNAG	3 cut(s)	277, 864, 872
BstDSI	CCRYGG	2 cut(s)	39, 201
BstFNI	CGCG	2 cut(s)	429, 460
BstH2I	RGCGCY	1 cut(s)	600
BstHHI	GCGC	2 cut(s)	460, 599
BstKTI	GATC	1 cut(s)	843
BstMBI	GATC	1 cut(s)	840
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 575
BstNI	CCWGG	1 cut(s)	184
BstSCI	CCNGG	4 cut(s)	182, 530, 768, 843
BstSFI	CTRYAG	1 cut(s)	564
BstSLI	GKGCMC	2 cut(s)	115, 537
BstUI	CGCG	2 cut(s)	429, 460
BstV1I	GCAGC	1 cut(s)	74
BsuRI	GGCC	3 cut(s)	487, 562, 794
BtgI	CCRYGG	2 cut(s)	39, 201
Cac8I	GCNNGC	3 cut(s)	238, 456, 820
CfoI	GCGC	2 cut(s)	460, 599
Cfr13I	GGNCC	3 cut(s)	4, 560, 793
Csp6I	GTAC	3 cut(s)	71, 129, 408
CviAII	CATG	3 cut(s)	40, 202, 722
CviQI	GTAC	3 cut(s)	71, 129, 408
DdeI	CTNAG	3 cut(s)	277, 864, 872
DpnI	GATC	1 cut(s)	842
DpnII	GATC	1 cut(s)	840
Eam1104I	CTCTTC	1 cut(s)	419
EarI	CTCTTC	1 cut(s)	419
Eco130I	CCWWGG	2 cut(s)	39, 201
Eco47I	GGWCC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	182
EcoT14I	CCWWGG	2 cut(s)	39, 201
ErhI	CCWWGG	2 cut(s)	39, 201
FaeI	CATG	3 cut(s)	43, 205, 725
FalI	AAGNNNNNCTT	2 cut(s)	341, 373
FaqI	GGGAC	1 cut(s)	368
FatI	CATG	3 cut(s)	39, 201, 721
FauI	CCCGC	4 cut(s)	447, 583, 811, 865
Fnu4HI	GCNGC	5 cut(s)	63, 241, 774, 823, 861
Fsp4HI	GCNGC	5 cut(s)	63, 241, 774, 823, 861
FspBI	CTAG	1 cut(s)	294
GlaI	GCGC	2 cut(s)	459, 598
GluI	GCNGC	5 cut(s)	63, 241, 774, 823, 861
HaeII	RGCGCY	1 cut(s)	600
HaeIII	GGCC	3 cut(s)	487, 562, 794
HapII	CCGG	3 cut(s)	531, 770, 844
HhaI	GCGC	2 cut(s)	460, 599
Hin1II	CATG	3 cut(s)	43, 205, 725
Hin6I	GCGC	2 cut(s)	458, 597
HinP1I	GCGC	2 cut(s)	458, 597
HinfI	GANTC	3 cut(s)	222, 371, 836
HpaII	CCGG	3 cut(s)	531, 770, 844
Hpy166II	GTNNAC	2 cut(s)	395, 829
Hpy188I	TCNGA	2 cut(s)	233, 835
Hpy188III	TCNNGA	1 cut(s)	680
Hpy8I	GTNNAC	2 cut(s)	395, 829
Hpy99I	CGWCG	2 cut(s)	510, 592
HpyAV	CCTTC	6 cut(s)	126, 344, 459, 537, 545, 594
HpyCH4V	TGCA	2 cut(s)	155, 735
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 575
HpyF3I	CTNAG	3 cut(s)	277, 864, 872
Hsp92II	CATG	3 cut(s)	43, 205, 725
HspAI	GCGC	2 cut(s)	458, 597
Kzo9I	GATC	1 cut(s)	840
LmnI	GCTCC	4 cut(s)	203, 209, 533, 703
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	2 cut(s)	744, 858
MaeI	CTAG	1 cut(s)	294
MaeIII	GTNAC	1 cut(s)	677
MalI	GATC	1 cut(s)	842
MbiI	CCGCTC	1 cut(s)	454
MboI	GATC	1 cut(s)	840
MboII	GAAGA	6 cut(s)	111, 317, 329, 406, 718, 746
MhlI	GDGCHC	4 cut(s)	115, 390, 530, 537
MluCI	AATT	4 cut(s)	135, 188, 264, 285
MlyI	GAGTC	1 cut(s)	231
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	5 cut(s)	171, 266, 516, 719, 811
MslI	CAYNNNNRTG	2 cut(s)	44, 740
MspA1I	CMGCKG	2 cut(s)	664, 863
MspI	CCGG	3 cut(s)	531, 770, 844
MspR9I	CCNGG	4 cut(s)	184, 532, 770, 845
Mva1269I	GAATGC	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	184
MvnI	CGCG	2 cut(s)	429, 460
MwoI	GCNNNNNNNGC	2 cut(s)	299, 575
NciI	CCSGG	3 cut(s)	532, 770, 845
NcoI	CCATGG	2 cut(s)	39, 201
NdeII	GATC	1 cut(s)	840
NlaIII	CATG	3 cut(s)	43, 205, 725
NlaIV	GGNNCC	2 cut(s)	112, 536
NmuCI	GTSAC	1 cut(s)	677
PctI	GAATGC	1 cut(s)	155
PfeI	GAWTC	2 cut(s)	371, 836
PfoI	TCCNGGA	1 cut(s)	182
PkrI	GCNGC	5 cut(s)	64, 242, 775, 824, 862
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	182
PspN4I	GGNNCC	2 cut(s)	112, 536
PspPI	GGNCC	3 cut(s)	4, 560, 793
PvuII	CAGCTG	1 cut(s)	664
RsaI	GTAC	3 cut(s)	72, 130, 409
RsaNI	GTAC	3 cut(s)	71, 129, 408
RseI	CAYNNNNRTG	2 cut(s)	44, 740
SatI	GCNGC	5 cut(s)	63, 241, 774, 823, 861
Sau3AI	GATC	1 cut(s)	840
Sau96I	GGNCC	3 cut(s)	4, 560, 793
SchI	GAGTC	1 cut(s)	231
ScrFI	CCNGG	4 cut(s)	184, 532, 770, 845
SduI	GDGCHC	4 cut(s)	115, 390, 530, 537
SfaNI	GCATC	2 cut(s)	744, 858
SfcI	CTRYAG	1 cut(s)	564
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	2 cut(s)	44, 740
Sse9I	AATT	4 cut(s)	135, 188, 264, 285
SspI	AATATT	1 cut(s)	715
SspMI	CTAG	1 cut(s)	294
StyD4I	CCNGG	4 cut(s)	182, 530, 768, 843
StyI	CCWWGG	2 cut(s)	39, 201
TaqI	TCGA	2 cut(s)	549, 839
TasI	AATT	4 cut(s)	135, 188, 264, 285
TauI	GCSGC	4 cut(s)	243, 776, 825, 863
TfiI	GAWTC	2 cut(s)	371, 836
TseFI	GTSAC	1 cut(s)	677
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	677
TspDTI	ATGAA	5 cut(s)	19, 181, 317, 719, 725
TspGWI	ACGGA	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	188
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.