Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0018763

Physical Location & Seq

Genomic Coordinates Reverse (-)

1252389 .. 1253891

Gene Structure 1503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000504

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGCAGCATATGAGCTTCACTAAAAGCCGGTTCTATTGGCGGGCCCCTCACTCCGCCATGAGAACAAAGAAAGCCGCACTATCTCCTTGCACTTGCAGCTTTGCCTGCCGCGCTTCGGTCAGTAGGATGGATAGCAAAGCCGCCTTCGGCCCTTCGCTTACACCCGTACTATTGAAATGGTTTGTCAGTAGAGATGTTCCCACAGGTGCCCCTTCTTCCAATGGTACTATAATTCCTATTCCTATCCCTGCATTCCCTCTTTTGGTCTATATACATTCCAGGAAATTCATACGCTCCATGGACGGAGCAAAAAGTGGAGTCTTGGTCAGAGCAAGCCGCCCTATTTTATTACCAGACATAATTGAGAGAGGCTCAGCCGAAATTAGAGCTAGAAACGCCTTATTTCGTTTCGTTCCCGTTCTTCATTTCCTTCTTCTCGCATACAAGGGGGACTTATCATATTTAGAATCTCTCTGCGGTGTGCTCTGTTTACTATTCTTTCGTACTCTCTTCTCTTTACCACGCGATAGGTCGTCAGCGAAGCGTGAGCGGGCGCGGAGAAGGAAACGCCAAACACTTCGGCCTAACGGGAATGAGCAACGACGAAATGACAAGATGAGGTGCTCCGGGCACCCCCGAAGGGTCGAAGGTTTTGGGCCTGTAGCTTTCCCCGCCCCCCCTTCGTCGGGTGGCGCTTGTGGGGGGCGTGTGCCACCAGAAATCGGGCTTGAAGCTCTCGCCTTACCAACGAGCCGACAGCTGATGGCTGTTGGTCACGACTACTACCAAAAAGCTCCAATGAAGATGAATATTTCACATGGAGGAGTGTGCATCTGTATGTTGGGTGTTCTTCTGTCGTGCGACCCGGCGGCTTATGTGCGACCTGTGGCCCACGCCTCCTATTTGTTCAGGGCGGGCGGCTGTGAACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CcmF_C

Protein Analysis

311

Amino Acids

34.22

Weight (kDa)

10.45

Isoelectric Point (pI)

62.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07815 ATMG00180
prunus_persica	Prupe.5G026600_v2.0.a1
pyrus_communis	pycom12401g00060
rosa_chinensis	RchiOBHm_MTg0498431
rosa_laevigata	RLG00000000022 RLG00000000465 RLG00000000504
rosa_samantha	Rh1BG019000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	206, 630
AccBSI	CCGCTC	1 cut(s)	550
AccII	CGCG	3 cut(s)	111, 525, 556
AcsI	RAATTY	1 cut(s)	284
AfaI	GTAC	3 cut(s)	168, 226, 505
AfiI	CCNNNNNNNGG	6 cut(s)	115, 262, 640, 685, 686, 722
AgsI	TTSAA	2 cut(s)	175, 731
AjnI	CCWGG	1 cut(s)	278
AluBI	AGCT	7 cut(s)	15, 99, 389, 665, 734, 760, 794
AluI	AGCT	7 cut(s)	15, 99, 389, 665, 734, 760, 794
Alw21I	GWGCWC	2 cut(s)	486, 626
AoxI	GGCC	5 cut(s)	42, 148, 581, 656, 888
ApaI	GGGCCC	1 cut(s)	46
ApeKI	GCWGC	2 cut(s)	4, 96
ApoI	RAATTY	1 cut(s)	284
AspLEI	GCGC	3 cut(s)	113, 556, 695
AspS9I	GGNCC	5 cut(s)	42, 43, 149, 656, 889
AsuC2I	CCSGG	2 cut(s)	628, 866
BaeGI	GKGCMC	3 cut(s)	46, 211, 633
BanI	GGYRCC	2 cut(s)	206, 630
BanII	GRGCYC	1 cut(s)	46
Bbv12I	GWGCWC	2 cut(s)	486, 626
BbvI	GCAGC	2 cut(s)	16, 108
BccI	CCATC	2 cut(s)	121, 757
BciT130I	CCWGG	1 cut(s)	280
BcnI	CCSGG	2 cut(s)	628, 866
BfaI	CTAG	1 cut(s)	390
BfmI	CTRYAG	1 cut(s)	660
BfoI	RGCGCY	1 cut(s)	696
BisI	GCNGC	8 cut(s)	5, 75, 97, 109, 141, 337, 870, 919
BlpI	GCTNAGC	1 cut(s)	373
BlsI	GCNGC	8 cut(s)	6, 76, 98, 110, 142, 338, 871, 920
Bme1390I	CCNGG	3 cut(s)	280, 628, 866
BmgT120I	GGNCC	5 cut(s)	42, 43, 149, 656, 889
BmiI	GGNNCC	4 cut(s)	44, 45, 208, 632
BmrFI	CCNGG	3 cut(s)	280, 628, 866
BmsI	GCATC	1 cut(s)	840
BplI	GAGNNNNNCTC	2 cut(s)	356, 388
Bpu1102I	GCTNAGC	1 cut(s)	373
BpuMI	CCSGG	2 cut(s)	628, 866
BsaJI	CCNNGG	1 cut(s)	297
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bsc4I	CCNNNNNNNGG	6 cut(s)	115, 262, 640, 685, 686, 722
Bse118I	RCCGGY	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	280
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	132
BseLI	CCNNNNNNNGG	6 cut(s)	115, 262, 640, 685, 686, 722
BseMII	CTCAG	1 cut(s)	387
BseRI	GAGGAG	1 cut(s)	837
BseSI	GKGCMC	3 cut(s)	46, 211, 633
BseXI	GCAGC	2 cut(s)	16, 108
Bsh1236I	CGCG	3 cut(s)	111, 525, 556
BshFI	GGCC	5 cut(s)	44, 150, 583, 658, 890
BshNI	GGYRCC	2 cut(s)	206, 630
BsiHKAI	GWGCWC	2 cut(s)	486, 626
BsiSI	CCGG	3 cut(s)	28, 627, 866
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	6 cut(s)	115, 262, 640, 685, 686, 722
BsmFI	GGGAC	3 cut(s)	384, 464, 980
BsmI	GAATGC	1 cut(s)	251
BsnI	GGCC	5 cut(s)	44, 150, 583, 658, 890
Bsp120I	GGGCCC	1 cut(s)	42
Bsp1286I	GDGCHC	5 cut(s)	46, 211, 486, 626, 633
Bsp1720I	GCTNAGC	1 cut(s)	373
Bsp19I	CCATGG	1 cut(s)	297
BspANI	GGCC	5 cut(s)	44, 150, 583, 658, 890
BspCNI	CTCAG	1 cut(s)	386
BspFNI	CGCG	3 cut(s)	111, 525, 556
BspLI	GGNNCC	4 cut(s)	44, 45, 208, 632
BspT107I	GGYRCC	2 cut(s)	206, 630
BsrBI	CCGCTC	1 cut(s)	550
BsrFI	RCCGGY	1 cut(s)	27
BssAI	RCCGGY	1 cut(s)	27
BssECI	CCNNGG	1 cut(s)	297
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	515
BstC8I	GCNNGC	5 cut(s)	42, 106, 334, 552, 916
BstDEI	CTNAG	1 cut(s)	373
BstDSI	CCRYGG	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	132
BstFNI	CGCG	3 cut(s)	111, 525, 556
BstH2I	RGCGCY	1 cut(s)	696
BstHHI	GCGC	3 cut(s)	113, 556, 695
BstMWI	GCNNNNNNNGC	5 cut(s)	96, 105, 110, 395, 671
BstNI	CCWGG	1 cut(s)	280
BstSCI	CCNGG	3 cut(s)	278, 626, 864
BstSFI	CTRYAG	1 cut(s)	660
BstSLI	GKGCMC	3 cut(s)	46, 211, 633
BstUI	CGCG	3 cut(s)	111, 525, 556
BstV1I	GCAGC	2 cut(s)	16, 108
BsuRI	GGCC	5 cut(s)	44, 150, 583, 658, 890
BtgI	CCRYGG	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	132
Cac8I	GCNNGC	5 cut(s)	42, 106, 334, 552, 916
CfoI	GCGC	3 cut(s)	113, 556, 695
Cfr10I	RCCGGY	1 cut(s)	27
Cfr13I	GGNCC	5 cut(s)	42, 43, 149, 656, 889
Csp6I	GTAC	3 cut(s)	167, 225, 504
CviAII	CATG	3 cut(s)	58, 298, 818
CviQI	GTAC	3 cut(s)	167, 225, 504
DdeI	CTNAG	1 cut(s)	373
Eam1104I	CTCTTC	1 cut(s)	515
EarI	CTCTTC	1 cut(s)	515
EciI	GGCGGA	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	297
Eco24I	GRGCYC	1 cut(s)	46
EcoO109I	RGGNCCY	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	278
EcoT14I	CCWWGG	1 cut(s)	297
EcoT38I	GRGCYC	1 cut(s)	46
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	3 cut(s)	61, 301, 821
FalI	AAGNNNNNCTT	2 cut(s)	437, 469
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	3 cut(s)	57, 297, 817
FauI	CCCGC	4 cut(s)	33, 543, 679, 907
FauNDI	CATATG	1 cut(s)	9
Fnu4HI	GCNGC	8 cut(s)	5, 75, 97, 109, 141, 337, 870, 919
FokI	GGATG	1 cut(s)	139
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	8 cut(s)	5, 75, 97, 109, 141, 337, 870, 919
FspBI	CTAG	1 cut(s)	390
GlaI	GCGC	3 cut(s)	112, 555, 694
GluI	GCNGC	8 cut(s)	5, 75, 97, 109, 141, 337, 870, 919
HaeII	RGCGCY	1 cut(s)	696
HaeIII	GGCC	5 cut(s)	44, 150, 583, 658, 890
HapII	CCGG	3 cut(s)	28, 627, 866
HhaI	GCGC	3 cut(s)	113, 556, 695
Hin1II	CATG	3 cut(s)	61, 301, 821
Hin6I	GCGC	3 cut(s)	111, 554, 693
HinP1I	GCGC	3 cut(s)	111, 554, 693
HinfI	GANTC	2 cut(s)	318, 467
HpaII	CCGG	3 cut(s)	28, 627, 866
Hpy166II	GTNNAC	2 cut(s)	491, 926
Hpy188I	TCNGA	2 cut(s)	329, 932
Hpy188III	TCNNGA	1 cut(s)	776
Hpy8I	GTNNAC	2 cut(s)	491, 926
Hpy99I	CGWCG	2 cut(s)	606, 688
HpyAV	CCTTC	8 cut(s)	154, 162, 222, 440, 555, 633, 641, 690
HpyCH4V	TGCA	5 cut(s)	4, 90, 96, 251, 831
HpyF10VI	GCNNNNNNNGC	5 cut(s)	96, 105, 110, 395, 671
HpyF3I	CTNAG	1 cut(s)	373
Hsp92II	CATG	3 cut(s)	61, 301, 821
HspAI	GCGC	3 cut(s)	111, 554, 693
LmnI	GCTCC	4 cut(s)	299, 305, 629, 799
Lsp1109I	GCAGC	2 cut(s)	16, 108
LweI	GCATC	1 cut(s)	840
MaeI	CTAG	1 cut(s)	390
MaeIII	GTNAC	1 cut(s)	773
MbiI	CCGCTC	1 cut(s)	550
MboII	GAAGA	6 cut(s)	207, 413, 425, 502, 814, 842
MhlI	GDGCHC	5 cut(s)	46, 211, 486, 626, 633
MluCI	AATT	4 cut(s)	231, 284, 360, 381
MlyI	GAGTC	1 cut(s)	327
MnlI	CCTC	6 cut(s)	57, 267, 362, 612, 815, 907
MslI	CAYNNNNRTG	1 cut(s)	836
MspA1I	CMGCKG	1 cut(s)	760
MspI	CCGG	3 cut(s)	28, 627, 866
MspR9I	CCNGG	3 cut(s)	280, 628, 866
Mva1269I	GAATGC	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	280
MvnI	CGCG	3 cut(s)	111, 525, 556
MwoI	GCNNNNNNNGC	5 cut(s)	96, 105, 110, 395, 671
NciI	CCSGG	2 cut(s)	628, 866
NcoI	CCATGG	1 cut(s)	297
NdeI	CATATG	1 cut(s)	9
NlaIII	CATG	3 cut(s)	61, 301, 821
NlaIV	GGNNCC	4 cut(s)	44, 45, 208, 632
NmuCI	GTSAC	1 cut(s)	773
PctI	GAATGC	1 cut(s)	251
PfeI	GAWTC	1 cut(s)	467
PfoI	TCCNGGA	1 cut(s)	278
PkrI	GCNGC	8 cut(s)	6, 76, 98, 110, 142, 338, 871, 920
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
Psp6I	CCWGG	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	278
PspN4I	GGNNCC	4 cut(s)	44, 45, 208, 632
PspOMI	GGGCCC	1 cut(s)	42
PspPI	GGNCC	5 cut(s)	42, 43, 149, 656, 889
PvuII	CAGCTG	1 cut(s)	760
RsaI	GTAC	3 cut(s)	168, 226, 505
RsaNI	GTAC	3 cut(s)	167, 225, 504
RseI	CAYNNNNRTG	1 cut(s)	836
SatI	GCNGC	8 cut(s)	5, 75, 97, 109, 141, 337, 870, 919
Sau96I	GGNCC	5 cut(s)	42, 43, 149, 656, 889
SchI	GAGTC	1 cut(s)	327
ScrFI	CCNGG	3 cut(s)	280, 628, 866
SduI	GDGCHC	5 cut(s)	46, 211, 486, 626, 633
SfaNI	GCATC	1 cut(s)	840
SfcI	CTRYAG	1 cut(s)	660
SmiMI	CAYNNNNRTG	1 cut(s)	836
Sse9I	AATT	4 cut(s)	231, 284, 360, 381
SspI	AATATT	1 cut(s)	811
SspMI	CTAG	1 cut(s)	390
StyD4I	CCNGG	3 cut(s)	278, 626, 864
StyI	CCWWGG	1 cut(s)	297
TaqI	TCGA	1 cut(s)	645
TaqII	GACCGA	1 cut(s)	106
TasI	AATT	4 cut(s)	231, 284, 360, 381
TauI	GCSGC	6 cut(s)	77, 111, 143, 339, 872, 921
TfiI	GAWTC	1 cut(s)	467
TseFI	GTSAC	1 cut(s)	773
TseI	GCWGC	2 cut(s)	4, 96
Tsp45I	GTSAC	1 cut(s)	773
TspDTI	ATGAA	4 cut(s)	277, 413, 815, 821
TspGWI	ACGGA	1 cut(s)	318
XapI	RAATTY	1 cut(s)	284
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.