ATMG00180

Cytochrome C biogenesis 452

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Mt
OG0018763
Physical Location & Seq
Reverse (-)
51293 .. 53611
2319 bp
Loading structure...
UTR
Exon/CDS
Intron
ATMG00180.1

Sequence Viewer

Length: 1359 bp
ATGGTCCAACTACATAACTTTTTCTTTTTTATTATTTTTATGGTCGTGCCTTGTGGCACGGCAGCACCCGTACTATTGAAATGGTTCGTCAGTAGAGATGTTCCCACGGGTGCCCCTTTTTCCAATGGTACTATAATTCCTATTCCTATCTCTTCATTCCCTCTTTTGGTCTATCTACATTCAAGGAAAATCATACGCTCCATGGACGGAGCAAAAAGTGGAGTCTTGGTCAGAGCAAGTCGCCCTATTCTATTACCAGACATAATTGGGAGAAGCTCATCTGAAACTAGAGCTAGAAAGGCCTTATTTTTTTTCGTTCCCGTTCTTCATTTCCGTCTTCTCGAATCCAAGGGGGACTTCTCATATTTAGAATCTTTCTGCGGTGTGCTCTGTTTACTATTCTTTCGTACTTTCCTCTTTTTAGCACGCGATAGGTCAGCGAAGCGTGAGCGGGCGCGGAGAAGGAAAGGCCAAACACTTCGGCCGAACGGGAATGAGCAACGACGAAATGACAAGATGAGGTGCTCCGGGCACCCCCATTTAGATTTAGAAAGAAGGGTCGAAGGTTTTGGGCCTCTAGCTTTCCCCGTCCCCCCTGAGTTGGGTGGTGCTTGTGTGGGGGGCGTGCCACCAGAAATCGGGCTTGAAGCTCTCGCCTTACCAAGGAGCCGACAGCTGATGGCTATGGCTGTTGGTCACGACTACTACCAAAAGGTTCCAATGAAGATGAATATTTCACATGGAGGAGTGTGCATCTGTATGTTGGGTGTTCTTCTGTCGAACACAAAGAAGATACAGTTCACTCAACGATTGCCTTTGGGTTACGAACTCCATATGGGGAAGGAACGTTGTTGTTTGCGAGGTCTCGATCATTTACATGGACCCACTTTTCATTCCATTTGTGGGAATTTGATGATCTATAAACCGTCCCTAACGAACGATCGGCTCATGTTTGAGCATGATGAATCACTTCATGCCGACCTCTTGCTAATAAACTTTCCGGCCTCATATAAGAATGGAAAACTTGAGCATTTTCTGCATTGGTGGATGAAGAATCGCAAACATAATAATTTTTGGTTAACCATGTTCCCAGAAAAAAGATACTTTCGAGAAAGGACGAGCACGGCTGAAGTGGCTATACATACAAATCTATTTACGGATCTATATGCTTCGATTGGAACTGGAAGTTCCAGAACAGGAGGTTGGTATACCACCATAATGAAACTGCCTTTTATTTTTTTTATTCGGATAGGATTTATGTTGGCTTCGTTGGGAGGCTCGCCTAGTTTGTTACGTCAGCTCCAAAAGGATAAGTTGCGTTGGAATCGAGAAAGTTCCGTGGAGTTCATAATTGCATAA

Protein Analysis

452

Amino Acids

51.58

Weight (kDa)

9.98

Isoelectric Point (pI)

45.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CcmF_C PF16327 354 - 430 3.1e-09 Cytochrome c-type biogenesis protein CcmF C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018763)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07815 ATMG00180
prunus_persica Prupe.5G026600_v2.0.a1
pyrus_communis pycom12401g00060
rosa_chinensis RchiOBHm_MTg0498431
rosa_laevigata RLG00000000022 RLG00000000465 RLG00000000504
rosa_samantha Rh1BG019000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 110, 531
AccBSI CCGCTC 1 cut(s) 451
AccI GTMKAC 1 cut(s) 1208
AccII CGCG 2 cut(s) 429, 457
AciI CCGC 3 cut(s) 381, 451, 457
AclI AACGTT 1 cut(s) 847
AclWI GGATC 1 cut(s) 1167
AcoI YGGCCR 1 cut(s) 482
AcsI RAATTY 1 cut(s) 907
AcuI CTGAAG 1 cut(s) 1149
AfaI GTAC 3 cut(s) 72, 130, 409
AfiI CCNNNNNNNGG 6 cut(s) 166, 601, 602, 638, 663, 903
AgsI TTSAA 3 cut(s) 79, 183, 647
AjuI GAANNNNNNNTTGG 4 cut(s) 341, 373, 1186, 1218
AluBI AGCT 6 cut(s) 276, 293, 581, 650, 676, 1300
AluI AGCT 6 cut(s) 276, 293, 581, 650, 676, 1300
Alw21I GWGCWC 3 cut(s) 390, 527, 1124
Alw26I GTCTC 1 cut(s) 869
AlwI GGATC 1 cut(s) 1167
AoxI GGCC 5 cut(s) 300, 469, 482, 572, 1002
ApeKI GCWGC 1 cut(s) 62
ApoI RAATTY 1 cut(s) 907
Asp700I GAANNNNTTC 2 cut(s) 83, 969
AspLEI GCGC 1 cut(s) 457
AspS9I GGNCC 3 cut(s) 4, 572, 881
AsuC2I CCSGG 1 cut(s) 529
AvaII GGWCC 2 cut(s) 4, 881
BaeGI GKGCMC 2 cut(s) 115, 534
BanI GGYRCC 2 cut(s) 110, 531
BarI GAAGNNNNNNTAC 2 cut(s) 1122, 1154
BbsI GAAGAC 1 cut(s) 329
Bbv12I GWGCWC 3 cut(s) 390, 527, 1124
BbvI GCAGC 1 cut(s) 74
BccI CCATC 1 cut(s) 673
BceAI ACGGC 2 cut(s) 75, 1140
BcnI CCSGG 1 cut(s) 529
BcoDI GTCTC 1 cut(s) 869
BfaI CTAG 4 cut(s) 288, 294, 578, 1284
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 1 cut(s) 529
Bme18I GGWCC 2 cut(s) 4, 881
BmgT120I GGNCC 3 cut(s) 4, 572, 881
BmiI GGNNCC 5 cut(s) 112, 533, 668, 717, 883
BmrFI CCNGG 1 cut(s) 529
BmsI GCATC 1 cut(s) 762
BpiI GAAGAC 1 cut(s) 329
BpuEI CTTGAG 1 cut(s) 1046
BpuMI CCSGG 1 cut(s) 529
BsaI GGTCTC 1 cut(s) 869
BsaJI CCNNGG 5 cut(s) 105, 201, 348, 662, 1338
BsaXI ACNNNNNCTCC 4 cut(s) 213, 243, 1284, 1314
Bsc4I CCNNNNNNNGG 6 cut(s) 166, 601, 602, 638, 663, 903
Bse1I ACTGG 1 cut(s) 1186
BseDI CCNNGG 5 cut(s) 105, 201, 348, 662, 1338
BseGI GGATG 1 cut(s) 1053
BseLI CCNNNNNNNGG 6 cut(s) 166, 601, 602, 638, 663, 903
BseMII CTCAG 1 cut(s) 588
BseNI ACTGG 1 cut(s) 1186
BseRI GAGGAG 1 cut(s) 759
BseSI GKGCMC 2 cut(s) 115, 534
BseX3I CGGCCG 1 cut(s) 482
BseXI GCAGC 1 cut(s) 74
Bsh1236I CGCG 2 cut(s) 429, 457
Bsh1285I CGRYCG 2 cut(s) 485, 943
BshFI GGCC 5 cut(s) 302, 471, 484, 574, 1004
BshNI GGYRCC 2 cut(s) 110, 531
BsiEI CGRYCG 2 cut(s) 485, 943
BsiHKAI GWGCWC 3 cut(s) 390, 527, 1124
BsiSI CCGG 2 cut(s) 528, 1001
BslFI GGGAC 3 cut(s) 368, 575, 913
BslI CCNNNNNNNGG 6 cut(s) 166, 601, 602, 638, 663, 903
BsmAI GTCTC 1 cut(s) 869
BsmFI GGGAC 3 cut(s) 368, 575, 913
BsnI GGCC 5 cut(s) 302, 471, 484, 574, 1004
Bso31I GGTCTC 1 cut(s) 869
Bsp1286I GDGCHC 5 cut(s) 115, 390, 527, 534, 1124
Bsp143I GATC 4 cut(s) 868, 915, 940, 1159
Bsp19I CCATGG 1 cut(s) 201
BspACI CCGC 3 cut(s) 381, 451, 457
BspANI GGCC 5 cut(s) 302, 471, 484, 574, 1004
BspCNI CTCAG 1 cut(s) 589
BspFNI CGCG 2 cut(s) 429, 457
BspLI GGNNCC 5 cut(s) 112, 533, 668, 717, 883
BspPI GGATC 1 cut(s) 1167
BspT107I GGYRCC 2 cut(s) 110, 531
BspTNI GGTCTC 1 cut(s) 869
BsrBI CCGCTC 1 cut(s) 451
BsrI ACTGG 1 cut(s) 1186
BssECI CCNNGG 5 cut(s) 105, 201, 348, 662, 1338
BssMI GATC 4 cut(s) 868, 915, 940, 1159
BssNAI GTATAC 1 cut(s) 1209
BssT1I CCWWGG 3 cut(s) 201, 348, 662
Bst1107I GTATAC 1 cut(s) 1209
Bst4CI ACNGT 2 cut(s) 798, 927
Bst6I CTCTTC 1 cut(s) 157
BstAPI GCANNNNNTGC 1 cut(s) 1036
BstC8I GCNNGC 4 cut(s) 427, 453, 626, 1280
BstDEI CTNAG 1 cut(s) 597
BstDSI CCRYGG 3 cut(s) 105, 201, 1338
BstENI CCTNNNNNAGG 1 cut(s) 661
BstF5I GGATG 1 cut(s) 1053
BstFNI CGCG 2 cut(s) 429, 457
BstHHI GCGC 1 cut(s) 457
BstKTI GATC 4 cut(s) 871, 918, 943, 1162
BstMAI GTCTC 1 cut(s) 869
BstMBI GATC 4 cut(s) 868, 915, 940, 1159
BstMCI CGRYCG 2 cut(s) 485, 943
BstMWI GCNNNNNNNGC 3 cut(s) 299, 1036, 1133
BstSCI CCNGG 1 cut(s) 527
BstSLI GKGCMC 2 cut(s) 115, 534
BstUI CGCG 2 cut(s) 429, 457
BstV1I GCAGC 1 cut(s) 74
BstV2I GAAGAC 1 cut(s) 329
BstX2I RGATCY 1 cut(s) 1159
BstYI RGATCY 1 cut(s) 1159
BstZ17I GTATAC 1 cut(s) 1209
BstZI CGGCCG 1 cut(s) 482
BsuRI GGCC 5 cut(s) 302, 471, 484, 574, 1004
BtgI CCRYGG 3 cut(s) 105, 201, 1338
BtsCI GGATG 1 cut(s) 1053
Cac8I GCNNGC 4 cut(s) 427, 453, 626, 1280
CfoI GCGC 1 cut(s) 457
Cfr13I GGNCC 3 cut(s) 4, 572, 881
Csp6I GTAC 3 cut(s) 71, 129, 408
CviAII CATG 7 cut(s) 202, 740, 878, 949, 959, 974, 1084
CviQI GTAC 3 cut(s) 71, 129, 408
DdeI CTNAG 1 cut(s) 597
DpnI GATC 4 cut(s) 870, 917, 942, 1161
DpnII GATC 4 cut(s) 868, 915, 940, 1159
EaeI YGGCCR 1 cut(s) 482
EagI CGGCCG 1 cut(s) 482
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
EclXI CGGCCG 1 cut(s) 482
Eco130I CCWWGG 3 cut(s) 201, 348, 662
Eco147I AGGCCT 1 cut(s) 302
Eco31I GGTCTC 1 cut(s) 869
Eco47I GGWCC 2 cut(s) 4, 881
Eco52I CGGCCG 1 cut(s) 482
Eco57I CTGAAG 1 cut(s) 1149
EcoNI CCTNNNNNAGG 1 cut(s) 661
EcoT14I CCWWGG 3 cut(s) 201, 348, 662
ErhI CCWWGG 3 cut(s) 201, 348, 662
FaeI CATG 7 cut(s) 205, 743, 881, 952, 962, 977, 1087
FalI AAGNNNNNCTT 2 cut(s) 341, 373
FaqI GGGAC 3 cut(s) 368, 575, 913
FatI CATG 7 cut(s) 201, 739, 877, 948, 958, 973, 1083
FauI CCCGC 1 cut(s) 444
FauNDI CATATG 1 cut(s) 834
FblI GTMKAC 1 cut(s) 1208
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 1 cut(s) 1060
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 4 cut(s) 288, 294, 578, 1284
GlaI GCGC 1 cut(s) 456
GluI GCNGC 1 cut(s) 63
HaeIII GGCC 5 cut(s) 302, 471, 484, 574, 1004
HapII CCGG 2 cut(s) 528, 1001
HhaI GCGC 1 cut(s) 457
Hin1II CATG 7 cut(s) 205, 743, 881, 952, 962, 977, 1087
Hin6I GCGC 1 cut(s) 455
HinP1I GCGC 1 cut(s) 455
HincII GTYRAC 1 cut(s) 1080
HindII GTYRAC 1 cut(s) 1080
HinfI GANTC 6 cut(s) 222, 344, 371, 965, 1054, 1324
HpaI GTTAAC 1 cut(s) 1080
HpaII CCGG 2 cut(s) 528, 1001
Hpy166II GTNNAC 4 cut(s) 395, 801, 1080, 1209
Hpy188I TCNGA 3 cut(s) 233, 283, 1248
Hpy188III TCNNGA 6 cut(s) 341, 698, 866, 1109, 1191, 1328
Hpy8I GTNNAC 4 cut(s) 395, 801, 1080, 1209
Hpy99I CGWCG 1 cut(s) 507
HpyAV CCTTC 4 cut(s) 456, 549, 557, 835
HpyCH4III ACNGT 2 cut(s) 798, 927
HpyCH4IV ACGT 2 cut(s) 847, 1294
HpyCH4V TGCA 3 cut(s) 753, 1039, 1355
HpyF10VI GCNNNNNNNGC 3 cut(s) 299, 1036, 1133
HpyF3I CTNAG 1 cut(s) 597
HpySE526I ACGT 2 cut(s) 847, 1294
Hsp92II CATG 7 cut(s) 205, 743, 881, 952, 962, 977, 1087
HspAI GCGC 1 cut(s) 455
KspAI GTTAAC 1 cut(s) 1080
Kzo9I GATC 4 cut(s) 868, 915, 940, 1159
LmnI GCTCC 5 cut(s) 203, 209, 530, 666, 1305
LpnPI CCDG 9 cut(s) 270, 541, 609, 645, 1014, 1104, 1167, 1182, 1204
Lsp1109I GCAGC 1 cut(s) 74
LweI GCATC 1 cut(s) 762
MaeI CTAG 4 cut(s) 288, 294, 578, 1284
MaeII ACGT 2 cut(s) 847, 1294
MaeIII GTNAC 3 cut(s) 695, 821, 1290
MalI GATC 4 cut(s) 870, 917, 942, 1161
MbiI CCGCTC 1 cut(s) 451
MboI GATC 4 cut(s) 868, 915, 940, 1159
MboII GAAGA 7 cut(s) 144, 317, 329, 736, 764, 802, 1063
MflI RGATCY 1 cut(s) 1159
MhlI GDGCHC 5 cut(s) 115, 390, 527, 534, 1124
MluCI AATT 5 cut(s) 135, 264, 907, 1069, 1350
MlyI GAGTC 1 cut(s) 231
MmeI TCCRAC 2 cut(s) 31, 1301
MroXI GAANNNNTTC 2 cut(s) 83, 969
MseI TTAA 1 cut(s) 1079
MslI CAYNNNNRTG 3 cut(s) 758, 876, 1217
MspA1I CMGCKG 1 cut(s) 676
MspI CCGG 2 cut(s) 528, 1001
MspR9I CCNGG 1 cut(s) 529
MvnI CGCG 2 cut(s) 429, 457
MwoI GCNNNNNNNGC 3 cut(s) 299, 1036, 1133
NciI CCSGG 1 cut(s) 529
NcoI CCATGG 1 cut(s) 201
NdeI CATATG 1 cut(s) 834
NdeII GATC 4 cut(s) 868, 915, 940, 1159
NlaIII CATG 7 cut(s) 205, 743, 881, 952, 962, 977, 1087
NlaIV GGNNCC 5 cut(s) 112, 533, 668, 717, 883
NmuCI GTSAC 1 cut(s) 695
PceI AGGCCT 1 cut(s) 302
PdmI GAANNNNTTC 2 cut(s) 83, 969
PfeI GAWTC 5 cut(s) 344, 371, 965, 1054, 1324
PkrI GCNGC 1 cut(s) 64
Ple19I CGATCG 1 cut(s) 943
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
Psp1406I AACGTT 1 cut(s) 847
PspN4I GGNNCC 5 cut(s) 112, 533, 668, 717, 883
PspPI GGNCC 3 cut(s) 4, 572, 881
PsuI RGATCY 1 cut(s) 1159
PvuI CGATCG 1 cut(s) 943
PvuII CAGCTG 1 cut(s) 676
RsaI GTAC 3 cut(s) 72, 130, 409
RsaNI GTAC 3 cut(s) 71, 129, 408
RseI CAYNNNNRTG 3 cut(s) 758, 876, 1217
SaqAI TTAA 1 cut(s) 1079
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 4 cut(s) 868, 915, 940, 1159
Sau96I GGNCC 3 cut(s) 4, 572, 881
SchI GAGTC 1 cut(s) 231
ScrFI CCNGG 1 cut(s) 529
SduI GDGCHC 5 cut(s) 115, 390, 527, 534, 1124
SfaNI GCATC 1 cut(s) 762
SinI GGWCC 2 cut(s) 4, 881
SmiMI CAYNNNNRTG 3 cut(s) 758, 876, 1217
SmlI CTYRAG 1 cut(s) 1025
SmoI CTYRAG 1 cut(s) 1025
Sse9I AATT 5 cut(s) 135, 264, 907, 1069, 1350
SseBI AGGCCT 1 cut(s) 302
SsiI CCGC 3 cut(s) 381, 451, 457
SspI AATATT 1 cut(s) 733
SspMI CTAG 4 cut(s) 288, 294, 578, 1284
StuI AGGCCT 1 cut(s) 302
StyD4I CCNGG 1 cut(s) 527
StyI CCWWGG 3 cut(s) 201, 348, 662
TaaI ACNGT 2 cut(s) 798, 927
TaiI ACGT 2 cut(s) 850, 1297
TaqI TCGA 7 cut(s) 342, 561, 779, 867, 1108, 1172, 1327
TasI AATT 5 cut(s) 135, 264, 907, 1069, 1350
TfiI GAWTC 5 cut(s) 344, 371, 965, 1054, 1324
Tru1I TTAA 1 cut(s) 1079
Tru9I TTAA 1 cut(s) 1079
TseFI GTSAC 1 cut(s) 695
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 695
TspGWI ACGGA 4 cut(s) 222, 323, 1172, 1327
VpaK11BI GGWCC 2 cut(s) 4, 881
XagI CCTNNNNNAGG 1 cut(s) 661
XapI RAATTY 1 cut(s) 907
XmiI GTMKAC 1 cut(s) 1208
XmnI GAANNNNTTC 2 cut(s) 83, 969
XspI CTAG 4 cut(s) 288, 294, 578, 1284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.