RLG00000000465

cytochrome c biogenesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0018763
Physical Location & Seq
Reverse (-)
1068453 .. 1069997
1545 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000465

Sequence Viewer

Length: 975 bp
ATGCAGCATATGAGCTTCACTAAAAGCCGGTTCTATTGGCGGGCCCCTCACTCCGCCATGAGAACAAAGAAAGCCGCACTATCTCCTTGCACTTGCAGCTTTGCCTGCCGCGCTTCGGTCAGTAGGATGGATAGCAAAGCCGCCTTCGGCCCTTCGCTTACACCCGTACTATTGAAATGGTTTGTCAGTAGAGATGTTCCCACAGGTGCCCCTTCTTCCAATGGTACTATAATTCCTATTCCTATCCCTGCATTCCCTCTTTTGGTCTATATACATTCCAGGAAATTCATACGCTCCATGGACGGAGCAAAAAGTGGAGTCTTGGTCAGAGCAAGCCGCCCTATTTTATTACCAGACATAATTGAGAGAGGCTCAGCCGAAATTAGAGCTAGAAACGCCTTATTTCGTTTCGTTCCCGTTCTTCATTTCCTTCTTCTCGCATACAAGGGGGACTTATCATATTTAGAATCTCTCTGCGGTGTGCTCTGTTTACTATTCTTTCGTACTCTCTTCTCTTTACCACGCGATAGGTCGTCAGCGAAGCGTGAGCGGGCGCGGAGAAGGAAACGCCAAACACTTCGGCCTAACGGGAATGAGCAACGACGAAATGACAAGATGAGGTGCTCCGGGCACCCCCGAAGGGTCGAAGGTTTTGGGCCTGTAGCTTTCCCCGCCCCCCCTTCGTCGGGTGGCGCTTGTGGGGGGCGTGTGCCACCAGAAATCGGGCTTGAAGCTCTCGCCTTACCAACGAGCCGACAGCTGATGGCTGTTGGTCACGACTACTACCAAAAAGCTCCAATGAAGATGAATATTTCACATGGAGGAGTGTGCATCTGTATGTTGGGTGTTCTTCTGTCGTGCGACCCGGCGGCTTATGTGCGACCTGTGGCCCACGCCTCCTATTTGTTCAGGGCGGGCGGCGTGAACTCTGATTCGATCCGGGTATTCAATCCCGCCGCTGAGATGCTCAGTTGA

Protein Analysis

325

Amino Acids

35.71

Weight (kDa)

10.53

Isoelectric Point (pI)

61.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018763)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07815 ATMG00180
prunus_persica Prupe.5G026600_v2.0.a1
pyrus_communis pycom12401g00060
rosa_chinensis RchiOBHm_MTg0498431
rosa_laevigata RLG00000000022 RLG00000000465 RLG00000000504
rosa_samantha Rh1BG019000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 206, 630
AccBSI CCGCTC 1 cut(s) 550
AccII CGCG 3 cut(s) 111, 525, 556
AclWI GGATC 1 cut(s) 931
AcsI RAATTY 1 cut(s) 284
AfaI GTAC 3 cut(s) 168, 226, 505
AfiI CCNNNNNNNGG 6 cut(s) 115, 262, 640, 685, 686, 722
AgsI TTSAA 3 cut(s) 175, 731, 949
AjnI CCWGG 1 cut(s) 278
AluBI AGCT 7 cut(s) 15, 99, 389, 665, 734, 760, 794
AluI AGCT 7 cut(s) 15, 99, 389, 665, 734, 760, 794
Alw21I GWGCWC 2 cut(s) 486, 626
AlwI GGATC 1 cut(s) 931
AoxI GGCC 5 cut(s) 42, 148, 581, 656, 888
ApaI GGGCCC 1 cut(s) 46
ApeKI GCWGC 2 cut(s) 4, 96
ApoI RAATTY 1 cut(s) 284
AspLEI GCGC 3 cut(s) 113, 556, 695
AspS9I GGNCC 5 cut(s) 42, 43, 149, 656, 889
AsuC2I CCSGG 3 cut(s) 628, 866, 941
BaeGI GKGCMC 3 cut(s) 46, 211, 633
BanI GGYRCC 2 cut(s) 206, 630
BanII GRGCYC 1 cut(s) 46
Bbv12I GWGCWC 2 cut(s) 486, 626
BbvI GCAGC 2 cut(s) 16, 108
BccI CCATC 2 cut(s) 121, 757
BciT130I CCWGG 1 cut(s) 280
BcnI CCSGG 3 cut(s) 628, 866, 941
BfaI CTAG 1 cut(s) 390
BfmI CTRYAG 1 cut(s) 660
BfoI RGCGCY 1 cut(s) 696
BisI GCNGC 9 cut(s) 5, 75, 97, 109, 141, 337, 870, 919, 957
BlpI GCTNAGC 1 cut(s) 373
BlsI GCNGC 9 cut(s) 6, 76, 98, 110, 142, 338, 871, 920, 958
Bme1390I CCNGG 4 cut(s) 280, 628, 866, 941
BmgT120I GGNCC 5 cut(s) 42, 43, 149, 656, 889
BmiI GGNNCC 4 cut(s) 44, 45, 208, 632
BmrFI CCNGG 4 cut(s) 280, 628, 866, 941
BmsI GCATC 2 cut(s) 840, 954
BplI GAGNNNNNCTC 2 cut(s) 356, 388
Bpu1102I GCTNAGC 1 cut(s) 373
BpuMI CCSGG 3 cut(s) 628, 866, 941
BsaJI CCNNGG 1 cut(s) 297
BsaXI ACNNNNNCTCC 2 cut(s) 309, 339
Bsc4I CCNNNNNNNGG 6 cut(s) 115, 262, 640, 685, 686, 722
Bse118I RCCGGY 1 cut(s) 27
BseBI CCWGG 1 cut(s) 280
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 1 cut(s) 132
BseLI CCNNNNNNNGG 6 cut(s) 115, 262, 640, 685, 686, 722
BseMII CTCAG 2 cut(s) 387, 951
BseRI GAGGAG 1 cut(s) 837
BseSI GKGCMC 3 cut(s) 46, 211, 633
BseXI GCAGC 2 cut(s) 16, 108
Bsh1236I CGCG 3 cut(s) 111, 525, 556
BshFI GGCC 5 cut(s) 44, 150, 583, 658, 890
BshNI GGYRCC 2 cut(s) 206, 630
BsiHKAI GWGCWC 2 cut(s) 486, 626
BsiSI CCGG 4 cut(s) 28, 627, 866, 940
BslFI GGGAC 1 cut(s) 464
BslI CCNNNNNNNGG 6 cut(s) 115, 262, 640, 685, 686, 722
BsmFI GGGAC 1 cut(s) 464
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 5 cut(s) 44, 150, 583, 658, 890
Bsp120I GGGCCC 1 cut(s) 42
Bsp1286I GDGCHC 5 cut(s) 46, 211, 486, 626, 633
Bsp143I GATC 1 cut(s) 936
Bsp1720I GCTNAGC 1 cut(s) 373
Bsp19I CCATGG 1 cut(s) 297
BspANI GGCC 5 cut(s) 44, 150, 583, 658, 890
BspCNI CTCAG 2 cut(s) 386, 952
BspFNI CGCG 3 cut(s) 111, 525, 556
BspLI GGNNCC 4 cut(s) 44, 45, 208, 632
BspPI GGATC 1 cut(s) 931
BspT107I GGYRCC 2 cut(s) 206, 630
BsrBI CCGCTC 1 cut(s) 550
BsrFI RCCGGY 1 cut(s) 27
BssAI RCCGGY 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 1 cut(s) 936
BssT1I CCWWGG 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 280
Bst6I CTCTTC 1 cut(s) 515
BstC8I GCNNGC 5 cut(s) 42, 106, 334, 552, 916
BstDEI CTNAG 3 cut(s) 373, 960, 968
BstDSI CCRYGG 1 cut(s) 297
BstF5I GGATG 1 cut(s) 132
BstFNI CGCG 3 cut(s) 111, 525, 556
BstH2I RGCGCY 1 cut(s) 696
BstHHI GCGC 3 cut(s) 113, 556, 695
BstKTI GATC 1 cut(s) 939
BstMBI GATC 1 cut(s) 936
BstMWI GCNNNNNNNGC 5 cut(s) 96, 105, 110, 395, 671
BstNI CCWGG 1 cut(s) 280
BstSCI CCNGG 4 cut(s) 278, 626, 864, 939
BstSFI CTRYAG 1 cut(s) 660
BstSLI GKGCMC 3 cut(s) 46, 211, 633
BstUI CGCG 3 cut(s) 111, 525, 556
BstV1I GCAGC 2 cut(s) 16, 108
BsuRI GGCC 5 cut(s) 44, 150, 583, 658, 890
BtgI CCRYGG 1 cut(s) 297
BtsCI GGATG 1 cut(s) 132
Cac8I GCNNGC 5 cut(s) 42, 106, 334, 552, 916
CfoI GCGC 3 cut(s) 113, 556, 695
Cfr10I RCCGGY 1 cut(s) 27
Cfr13I GGNCC 5 cut(s) 42, 43, 149, 656, 889
Csp6I GTAC 3 cut(s) 167, 225, 504
CviAII CATG 3 cut(s) 58, 298, 818
CviQI GTAC 3 cut(s) 167, 225, 504
DdeI CTNAG 3 cut(s) 373, 960, 968
DpnI GATC 1 cut(s) 938
DpnII GATC 1 cut(s) 936
Eam1104I CTCTTC 1 cut(s) 515
EarI CTCTTC 1 cut(s) 515
EciI GGCGGA 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 297
Eco24I GRGCYC 1 cut(s) 46
EcoO109I RGGNCCY 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 278
EcoT14I CCWWGG 1 cut(s) 297
EcoT38I GRGCYC 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 3 cut(s) 61, 301, 821
FalI AAGNNNNNCTT 2 cut(s) 437, 469
FaqI GGGAC 1 cut(s) 464
FatI CATG 3 cut(s) 57, 297, 817
FauI CCCGC 5 cut(s) 33, 543, 679, 907, 961
FauNDI CATATG 1 cut(s) 9
Fnu4HI GCNGC 9 cut(s) 5, 75, 97, 109, 141, 337, 870, 919, 957
FokI GGATG 1 cut(s) 139
FriOI GRGCYC 1 cut(s) 46
Fsp4HI GCNGC 9 cut(s) 5, 75, 97, 109, 141, 337, 870, 919, 957
FspBI CTAG 1 cut(s) 390
GlaI GCGC 3 cut(s) 112, 555, 694
GluI GCNGC 9 cut(s) 5, 75, 97, 109, 141, 337, 870, 919, 957
HaeII RGCGCY 1 cut(s) 696
HaeIII GGCC 5 cut(s) 44, 150, 583, 658, 890
HapII CCGG 4 cut(s) 28, 627, 866, 940
HhaI GCGC 3 cut(s) 113, 556, 695
Hin1II CATG 3 cut(s) 61, 301, 821
Hin6I GCGC 3 cut(s) 111, 554, 693
HinP1I GCGC 3 cut(s) 111, 554, 693
HinfI GANTC 3 cut(s) 318, 467, 932
HpaII CCGG 4 cut(s) 28, 627, 866, 940
Hpy166II GTNNAC 2 cut(s) 491, 925
Hpy188I TCNGA 2 cut(s) 329, 931
Hpy188III TCNNGA 1 cut(s) 776
Hpy8I GTNNAC 2 cut(s) 491, 925
Hpy99I CGWCG 2 cut(s) 606, 688
HpyAV CCTTC 8 cut(s) 154, 162, 222, 440, 555, 633, 641, 690
HpyCH4V TGCA 5 cut(s) 4, 90, 96, 251, 831
HpyF10VI GCNNNNNNNGC 5 cut(s) 96, 105, 110, 395, 671
HpyF3I CTNAG 3 cut(s) 373, 960, 968
Hsp92II CATG 3 cut(s) 61, 301, 821
HspAI GCGC 3 cut(s) 111, 554, 693
Kzo9I GATC 1 cut(s) 936
LmnI GCTCC 4 cut(s) 299, 305, 629, 799
Lsp1109I GCAGC 2 cut(s) 16, 108
LweI GCATC 2 cut(s) 840, 954
MaeI CTAG 1 cut(s) 390
MaeIII GTNAC 1 cut(s) 773
MalI GATC 1 cut(s) 938
MbiI CCGCTC 1 cut(s) 550
MboI GATC 1 cut(s) 936
MboII GAAGA 6 cut(s) 207, 413, 425, 502, 814, 842
MhlI GDGCHC 5 cut(s) 46, 211, 486, 626, 633
MluCI AATT 4 cut(s) 231, 284, 360, 381
MlyI GAGTC 1 cut(s) 327
MnlI CCTC 6 cut(s) 57, 267, 362, 612, 815, 907
MslI CAYNNNNRTG 1 cut(s) 836
MspA1I CMGCKG 2 cut(s) 760, 959
MspI CCGG 4 cut(s) 28, 627, 866, 940
MspR9I CCNGG 4 cut(s) 280, 628, 866, 941
Mva1269I GAATGC 1 cut(s) 251
MvaI CCWGG 1 cut(s) 280
MvnI CGCG 3 cut(s) 111, 525, 556
MwoI GCNNNNNNNGC 5 cut(s) 96, 105, 110, 395, 671
NciI CCSGG 3 cut(s) 628, 866, 941
NcoI CCATGG 1 cut(s) 297
NdeI CATATG 1 cut(s) 9
NdeII GATC 1 cut(s) 936
NlaIII CATG 3 cut(s) 61, 301, 821
NlaIV GGNNCC 4 cut(s) 44, 45, 208, 632
NmuCI GTSAC 1 cut(s) 773
PctI GAATGC 1 cut(s) 251
PfeI GAWTC 2 cut(s) 467, 932
PfoI TCCNGGA 1 cut(s) 278
PkrI GCNGC 9 cut(s) 6, 76, 98, 110, 142, 338, 871, 920, 958
PleI GAGTC 1 cut(s) 326
PpsI GAGTC 1 cut(s) 326
Psp6I CCWGG 1 cut(s) 278
PspGI CCWGG 1 cut(s) 278
PspN4I GGNNCC 4 cut(s) 44, 45, 208, 632
PspOMI GGGCCC 1 cut(s) 42
PspPI GGNCC 5 cut(s) 42, 43, 149, 656, 889
PvuII CAGCTG 1 cut(s) 760
RsaI GTAC 3 cut(s) 168, 226, 505
RsaNI GTAC 3 cut(s) 167, 225, 504
RseI CAYNNNNRTG 1 cut(s) 836
SatI GCNGC 9 cut(s) 5, 75, 97, 109, 141, 337, 870, 919, 957
Sau3AI GATC 1 cut(s) 936
Sau96I GGNCC 5 cut(s) 42, 43, 149, 656, 889
SchI GAGTC 1 cut(s) 327
ScrFI CCNGG 4 cut(s) 280, 628, 866, 941
SduI GDGCHC 5 cut(s) 46, 211, 486, 626, 633
SfaNI GCATC 2 cut(s) 840, 954
SfcI CTRYAG 1 cut(s) 660
SmiMI CAYNNNNRTG 1 cut(s) 836
Sse9I AATT 4 cut(s) 231, 284, 360, 381
SspI AATATT 1 cut(s) 811
SspMI CTAG 1 cut(s) 390
StyD4I CCNGG 4 cut(s) 278, 626, 864, 939
StyI CCWWGG 1 cut(s) 297
TaqI TCGA 2 cut(s) 645, 935
TaqII GACCGA 1 cut(s) 106
TasI AATT 4 cut(s) 231, 284, 360, 381
TauI GCSGC 7 cut(s) 77, 111, 143, 339, 872, 921, 959
TfiI GAWTC 2 cut(s) 467, 932
TseFI GTSAC 1 cut(s) 773
TseI GCWGC 2 cut(s) 4, 96
Tsp45I GTSAC 1 cut(s) 773
TspDTI ATGAA 4 cut(s) 277, 413, 815, 821
TspGWI ACGGA 1 cut(s) 318
XapI RAATTY 1 cut(s) 284
XspI CTAG 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.