AT2G13690

BTB POZ domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0016029
Physical Location & Seq
Reverse (-)
5706472 .. 5709017
2546 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G13690.1

Sequence Viewer

Length: 1635 bp
ATGACAATGGGCGACTCTGACCTCCGTAAACCTACCAATTTCGGCACCGGACATCTATCTCGCCGACGATCATGGTGTTGCTCTTTCGCCGTACCTCCAGCGAGTCCTGATACTCGTTCGATTTCATCTCGTAACCACATTCCAGCTAAATCTCAGCAGCAGAGACCTAAACTGGTTCCTTGCTCACCGCAAAGCTCTAAATCTGCTTTAAACATCGTAAATCGGATCGACCCGCGTCGGATCTTATCACCGGGTCGGGTTTCACCCATAGATTCGGATCCGACCGTCACTACAATGCAAGAGACCGAGACCACTCAGGAAGAAGAAGATGATGCGGTTGTTGTAGATTCGACACCAAATCTTCGTTCTGAGAGTTTTAGAGCTCCGAAGATTGAGGTTACGGGTTCGGGTTTGAGTGAGGGTTACGATGCTAGGTTGAGTTTGAAGGGAAGAAATGGTGGTGGGGTTCTGGTGTTGGAGCTTAGCTTGGAGGTTTTGGCTGCGAATTCTGATGTGTTCTCGGGTTTGATTGCGGAGGAGAAGAAGTGTTCTTCTTCTTCATCGTCTTTAGGATTGAAGAACACATGCAGGATTGAAGTATGTGATGTGGAGAATCTTGGTGTTTTTAGGGAAACTGTTGAGCTCATGTTTGAGGAAAGTAATGTTATTATCAAGAAGTTTATGACAATGGGAGTCTACAGAGCCATTGATGTACTTGAGGTAGCGGCTGGAATCAAATTTTCAAGAGCTGTCTTATCGTGTCTGAAATATCTTGAAGCTGTTCCTTGGACAGAGGATGAAGAGGAAAAACTGAGGAGACTTCTTGGAATTTATAGCTTTGATGATGATGCAGTTAGTGAAATTTTGGCAAGATTTAATTCAAACGAGACAGAAAACTTGCAAGACAGTTTATCGAAGAAACTGGTTTGGTCAATTACTTCCTGCAGTGATGTAAATCCTAGAAACGAGCTCAAATCTCTGGTGAAGGGTCTTCTTTGCAAAAGCTCAGTGTACGAGAAAGAACAGCCTGAGATCAACAAGGAAGACATATATAGAGCAGGCAAGTGTTGTGTGGATTCATTAGCTAAGTTGTTTGAAGAGGGCAGTAGTAGTAGTAGTAGCAAGAAAGAAAAGCCATTGATTGAAAGTATTTCGAGGGAGGTTGAGAACATAAACTGGCTGCTGGAGATCATGATAGATCGGGAAATAGCAGAAGAATTTGTGGAAATATGGGGGAAGCAAAGAAGGCTAGTGGAGATGCATGAGAGAGTGTCACCAATGGTGAGGTATGAAGTAAGCAGAGTAACAGGAGCGATATTTATTGCAATGGGGAAAAGGAGAGTGCAATGCGGAGGAGAAGCAAGGGCGGGGCTAGTAGAAGCGTGGTTCAAGCCAATGTTAGTAGATTTTGGGTGGCTACAGAGATGCAAGAAAGGACTAGACATGAGGGAAGTAGAAGAAGGGATGGGGCAAACGCTTTTAACGCTACCAGTAAAAGAGCAGTATCAAGTGTTCATGGAATGGTTCAGGTGGTTCTCAAAGCATGGGACTGAGTGCCCTAATCTCAGCAAGGCGTTTCAGATATGGTGGCGTAGGTCATTCCTTAGAGGTGTAGAATCATCTACTTGTAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

544

Amino Acids

61.39

Weight (kDa)

5.94

Isoelectric Point (pI)

58.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB-POZ_ANK-like PF25553 301 - 536 7.8e-119 BTB/POZ Ankyrin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016029)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G13690
fragaria_vesca FvH4_1g24270
malus_domestica MD15G1343000.v1.1
pyrus_communis pycom15g30410
rosa_chinensis RchiOBHm_Chr2g0120761
rosa_laevigata RLG00000018578 RLG00000024327
rosa_multiflora Rmu_sc0000319.1_g000008
rosa_roxburghii Rroxscaffold_2G00123110
rosa_rugosa Rorug02G0230900
rosa_samantha Rh2AG287500 Rh2BG299000 Rh2CG276900 Rh2DG312800
rosa_wichuraiana Rw2G023060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 44
AccI GTMKAC 1 cut(s) 696
AccII CGCG 1 cut(s) 235
AciI CCGC 7 cut(s) 188, 233, 335, 533, 725, 1350, 1367
AclWI GGATC 4 cut(s) 233, 248, 272, 285
AcsI RAATTY 5 cut(s) 505, 737, 828, 861, 1217
AfaI GTAC 3 cut(s) 93, 714, 1013
AgsI TTSAA 9 cut(s) 445, 577, 596, 744, 776, 882, 1097, 1145, 1390
AjuI GAANNNNNNNTTGG 2 cut(s) 349, 381
Alw21I GWGCWC 3 cut(s) 385, 645, 972
Alw26I GTCTC 5 cut(s) 157, 296, 302, 811, 881
AlwI GGATC 4 cut(s) 233, 248, 272, 285
Ama87I CYCGRG 1 cut(s) 520
ApeKI GCWGC 3 cut(s) 157, 500, 1180
ApoI RAATTY 5 cut(s) 505, 737, 828, 861, 1217
Asp700I GAANNNNTTC 1 cut(s) 780
AsuC2I CCSGG 1 cut(s) 252
AsuHPI GGTGA 6 cut(s) 177, 240, 255, 994, 1266, 1294
AvaI CYCGRG 1 cut(s) 520
BaeGI GKGCMC 1 cut(s) 1559
BamHI GGATCC 1 cut(s) 277
BanI GGYRCC 1 cut(s) 44
BanII GRGCYC 3 cut(s) 385, 645, 972
BbsI GAAGAC 2 cut(s) 983, 1050
Bbv12I GWGCWC 3 cut(s) 385, 645, 972
BbvI GCAGC 3 cut(s) 169, 487, 1167
BccI CCATC 1 cut(s) 1459
BceAI ACGGC 1 cut(s) 74
BcnI CCSGG 1 cut(s) 252
BcoDI GTCTC 5 cut(s) 157, 296, 302, 811, 881
BfaI CTAG 5 cut(s) 432, 960, 1250, 1373, 1439
BfmI CTRYAG 3 cut(s) 697, 943, 1418
BisI GCNGC 4 cut(s) 158, 501, 726, 1181
BlpI GCTNAGC 1 cut(s) 482
BlsI GCNGC 4 cut(s) 159, 502, 727, 1182
Bme1390I CCNGG 1 cut(s) 252
BmeT110I CYCGRG 1 cut(s) 520
BmiI GGNNCC 3 cut(s) 46, 177, 279
BmrFI CCNGG 1 cut(s) 252
BmsI GCATC 5 cut(s) 322, 418, 838, 1248, 1415
BoxI GACNNNNGTC 1 cut(s) 234
BpiI GAAGAC 2 cut(s) 983, 1050
BpmI CTGGAG 2 cut(s) 81, 1205
Bpu1102I GCTNAGC 1 cut(s) 482
BpuEI CTTGAG 1 cut(s) 737
BpuMI CCSGG 1 cut(s) 252
BsaBI GATNNNNATC 2 cut(s) 276, 954
BsaI GGTCTC 3 cut(s) 157, 296, 302
BsaJI CCNNGG 1 cut(s) 785
BsaWI WCCGGW 1 cut(s) 47
BsaXI ACNNNNNCTCC 2 cut(s) 530, 560
Bse1I ACTGG 4 cut(s) 177, 927, 1181, 1490
Bse3DI GCAATG 2 cut(s) 1332, 1352
Bse8I GATNNNNATC 2 cut(s) 276, 954
BseDI CCNNGG 1 cut(s) 785
BseGI GGATG 2 cut(s) 802, 1470
BseJI GATNNNNATC 2 cut(s) 276, 954
BseMI GCAATG 2 cut(s) 1332, 1352
BseMII CTCAG 8 cut(s) 167, 329, 360, 803, 1020, 1020, 1542, 1579
BseNI ACTGG 4 cut(s) 177, 927, 1181, 1490
BseRI GAGGAG 3 cut(s) 551, 829, 1368
BseSI GKGCMC 1 cut(s) 1559
BseXI GCAGC 3 cut(s) 169, 487, 1167
Bsh1236I CGCG 1 cut(s) 235
Bsh1285I CGRYCG 1 cut(s) 285
BshNI GGYRCC 1 cut(s) 44
BsiEI CGRYCG 1 cut(s) 285
BsiHKAI GWGCWC 3 cut(s) 385, 645, 972
BsiHKCI CYCGRG 1 cut(s) 520
BsiSI CCGG 2 cut(s) 48, 251
BslFI GGGAC 1 cut(s) 1561
BsmAI GTCTC 5 cut(s) 157, 296, 302, 811, 881
BsmFI GGGAC 1 cut(s) 1561
Bso31I GGTCTC 3 cut(s) 157, 296, 302
BsoBI CYCGRG 1 cut(s) 520
Bsp1286I GDGCHC 4 cut(s) 385, 645, 972, 1559
Bsp143I GATC 7 cut(s) 68, 225, 240, 277, 1032, 1188, 1198
Bsp1720I GCTNAGC 1 cut(s) 482
BspACI CCGC 7 cut(s) 188, 233, 335, 533, 725, 1350, 1367
BspCNI CTCAG 8 cut(s) 166, 328, 361, 804, 1019, 1021, 1543, 1578
BspFNI CGCG 1 cut(s) 235
BspHI TCATGA 1 cut(s) 1191
BspLI GGNNCC 3 cut(s) 46, 177, 279
BspMAI CTGCAG 1 cut(s) 947
BspPI GGATC 4 cut(s) 233, 248, 272, 285
BspT107I GGYRCC 1 cut(s) 44
BspTNI GGTCTC 3 cut(s) 157, 296, 302
BsrDI GCAATG 2 cut(s) 1332, 1352
BsrI ACTGG 4 cut(s) 177, 927, 1181, 1490
BssECI CCNNGG 1 cut(s) 785
BssMI GATC 7 cut(s) 68, 225, 240, 277, 1032, 1188, 1198
BssT1I CCWWGG 1 cut(s) 785
Bst4CI ACNGT 3 cut(s) 286, 637, 908
Bst6I CTCTTC 2 cut(s) 795, 1092
BstC8I GCNNGC 1 cut(s) 1060
BstF5I GGATG 2 cut(s) 802, 1470
BstFNI CGCG 1 cut(s) 235
BstKTI GATC 7 cut(s) 71, 228, 243, 280, 1035, 1191, 1201
BstMAI GTCTC 5 cut(s) 157, 296, 302, 811, 881
BstMBI GATC 7 cut(s) 68, 225, 240, 277, 1032, 1188, 1198
BstMCI CGRYCG 1 cut(s) 285
BstMWI GCNNNNNNNGC 2 cut(s) 1246, 1483
BstNSI RCATGY 1 cut(s) 588
BstPAI GACNNNNGTC 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 250
BstSFI CTRYAG 3 cut(s) 697, 943, 1418
BstSLI GKGCMC 1 cut(s) 1559
BstUI CGCG 1 cut(s) 235
BstV1I GCAGC 3 cut(s) 169, 487, 1167
BstV2I GAAGAC 2 cut(s) 983, 1050
BstX2I RGATCY 2 cut(s) 240, 277
BstYI RGATCY 2 cut(s) 240, 277
BtsCI GGATG 2 cut(s) 802, 1470
BtsI GCAGTG 1 cut(s) 952
BtsIMutI CAGTG 2 cut(s) 952, 1014
Cac8I GCNNGC 1 cut(s) 1060
CciI TCATGA 1 cut(s) 1191
CseI GACGC 1 cut(s) 224
Csp6I GTAC 3 cut(s) 92, 713, 1012
CviAII CATG 8 cut(s) 72, 585, 646, 1192, 1262, 1444, 1516, 1544
CviQI GTAC 3 cut(s) 92, 713, 1012
DpnI GATC 7 cut(s) 70, 227, 242, 279, 1034, 1190, 1200
DpnII GATC 7 cut(s) 68, 225, 240, 277, 1032, 1188, 1198
DraI TTTAAA 1 cut(s) 210
Eam1104I CTCTTC 2 cut(s) 795, 1092
EarI CTCTTC 2 cut(s) 795, 1092
Ecl136II GAGCTC 3 cut(s) 383, 643, 970
Eco130I CCWWGG 1 cut(s) 785
Eco24I GRGCYC 3 cut(s) 385, 645, 972
Eco31I GGTCTC 3 cut(s) 157, 296, 302
Eco53kI GAGCTC 3 cut(s) 383, 643, 970
Eco88I CYCGRG 1 cut(s) 520
EcoICRI GAGCTC 3 cut(s) 383, 643, 970
EcoRI GAATTC 1 cut(s) 505
EcoT14I CCWWGG 1 cut(s) 785
EcoT22I ATGCAT 1 cut(s) 1263
EcoT38I GRGCYC 3 cut(s) 385, 645, 972
ErhI CCWWGG 1 cut(s) 785
FaeI CATG 8 cut(s) 75, 588, 649, 1195, 1265, 1447, 1519, 1547
FaqI GGGAC 1 cut(s) 1561
FatI CATG 8 cut(s) 71, 584, 645, 1191, 1261, 1443, 1515, 1543
FauI CCCGC 2 cut(s) 240, 1360
FblI GTMKAC 1 cut(s) 696
Fnu4HI GCNGC 4 cut(s) 158, 501, 726, 1181
FokI GGATG 2 cut(s) 809, 1477
FriOI GRGCYC 3 cut(s) 385, 645, 972
Fsp4HI GCNGC 4 cut(s) 158, 501, 726, 1181
FspBI CTAG 5 cut(s) 432, 960, 1250, 1373, 1439
GluI GCNGC 4 cut(s) 158, 501, 726, 1181
GsuI CTGGAG 2 cut(s) 81, 1205
HapII CCGG 2 cut(s) 48, 251
HgaI GACGC 1 cut(s) 224
Hin1II CATG 8 cut(s) 75, 588, 649, 1195, 1265, 1447, 1519, 1547
HinfI GANTC 9 cut(s) 14, 103, 272, 347, 613, 693, 732, 1076, 1616
HpaII CCGG 2 cut(s) 48, 251
HphI GGTGA 6 cut(s) 177, 240, 255, 994, 1266, 1294
Hpy166II GTNNAC 3 cut(s) 29, 697, 1012
Hpy188III TCNNGA 7 cut(s) 107, 317, 673, 744, 773, 1192, 1202
Hpy8I GTNNAC 3 cut(s) 29, 697, 1012
Hpy99I CGWCG 2 cut(s) 69, 240
HpyAV CCTTC 4 cut(s) 439, 979, 1239, 1454
HpyCH4III ACNGT 3 cut(s) 286, 637, 908
HpyF10VI GCNNNNNNNGC 2 cut(s) 1246, 1483
Hsp92II CATG 8 cut(s) 75, 588, 649, 1195, 1265, 1447, 1519, 1547
Kzo9I GATC 7 cut(s) 68, 225, 240, 277, 1032, 1188, 1198
LmnI GCTCC 3 cut(s) 388, 478, 1310
Lsp1109I GCAGC 3 cut(s) 169, 487, 1167
LweI GCATC 5 cut(s) 322, 418, 838, 1248, 1415
MaeI CTAG 5 cut(s) 432, 960, 1250, 1373, 1439
MaeIII GTNAC 6 cut(s) 131, 286, 397, 422, 1272, 1303
MalI GATC 7 cut(s) 70, 227, 242, 279, 1034, 1190, 1200
MboI GATC 7 cut(s) 68, 225, 240, 277, 1032, 1188, 1198
MflI RGATCY 2 cut(s) 240, 277
MhlI GDGCHC 4 cut(s) 385, 645, 972, 1559
MluCI AATT 8 cut(s) 37, 505, 737, 828, 861, 877, 933, 1217
MlyI GAGTC 3 cut(s) 8, 112, 702
MmeI TCCRAC 3 cut(s) 218, 305, 456
Mph1103I ATGCAT 1 cut(s) 1263
MroXI GAANNNNTTC 1 cut(s) 780
MseI TTAA 3 cut(s) 209, 876, 1481
MslI CAYNNNNRTG 1 cut(s) 293
MspI CCGG 2 cut(s) 48, 251
MspR9I CCNGG 1 cut(s) 252
MvnI CGCG 1 cut(s) 235
MwoI GCNNNNNNNGC 2 cut(s) 1246, 1483
NciI CCSGG 1 cut(s) 252
NdeII GATC 7 cut(s) 68, 225, 240, 277, 1032, 1188, 1198
NlaIII CATG 8 cut(s) 75, 588, 649, 1195, 1265, 1447, 1519, 1547
NlaIV GGNNCC 3 cut(s) 46, 177, 279
NmuCI GTSAC 2 cut(s) 286, 1272
NsiI ATGCAT 1 cut(s) 1263
NspI RCATGY 1 cut(s) 588
PagI TCATGA 1 cut(s) 1191
PdmI GAANNNNTTC 1 cut(s) 780
PfeI GAWTC 6 cut(s) 272, 347, 613, 732, 1076, 1616
PkrI GCNGC 4 cut(s) 159, 502, 727, 1182
PleI GAGTC 3 cut(s) 8, 111, 701
PpsI GAGTC 3 cut(s) 8, 111, 701
PshAI GACNNNNGTC 1 cut(s) 234
Psp124BI GAGCTC 3 cut(s) 385, 645, 972
PspN4I GGNNCC 3 cut(s) 46, 177, 279
PsrI GAACNNNNNNTAC 2 cut(s) 1496, 1528
PstI CTGCAG 1 cut(s) 947
PsuI RGATCY 2 cut(s) 240, 277
RsaI GTAC 3 cut(s) 93, 714, 1013
RsaNI GTAC 3 cut(s) 92, 713, 1012
RseI CAYNNNNRTG 1 cut(s) 293
SacI GAGCTC 3 cut(s) 385, 645, 972
SaqAI TTAA 3 cut(s) 209, 876, 1481
SatI GCNGC 4 cut(s) 158, 501, 726, 1181
Sau3AI GATC 7 cut(s) 68, 225, 240, 277, 1032, 1188, 1198
SchI GAGTC 3 cut(s) 8, 112, 702
ScrFI CCNGG 1 cut(s) 252
SduI GDGCHC 4 cut(s) 385, 645, 972, 1559
SfaNI GCATC 5 cut(s) 322, 418, 838, 1248, 1415
SfcI CTRYAG 3 cut(s) 697, 943, 1418
SmiMI CAYNNNNRTG 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 716
SmoI CTYRAG 1 cut(s) 716
Sse9I AATT 8 cut(s) 37, 505, 737, 828, 861, 877, 933, 1217
SsiI CCGC 7 cut(s) 188, 233, 335, 533, 725, 1350, 1367
SspMI CTAG 5 cut(s) 432, 960, 1250, 1373, 1439
SstI GAGCTC 3 cut(s) 385, 645, 972
StyD4I CCNGG 1 cut(s) 250
StyI CCWWGG 1 cut(s) 785
TaaI ACNGT 3 cut(s) 286, 637, 908
TaqI TCGA 5 cut(s) 119, 228, 350, 914, 1154
TaqII GACCGA 1 cut(s) 320
TasI AATT 8 cut(s) 37, 505, 737, 828, 861, 877, 933, 1217
TatI WGTACW 1 cut(s) 712
TauI GCSGC 1 cut(s) 728
TfiI GAWTC 6 cut(s) 272, 347, 613, 732, 1076, 1616
Tru1I TTAA 3 cut(s) 209, 876, 1481
Tru9I TTAA 3 cut(s) 209, 876, 1481
TscAI CASTG 2 cut(s) 952, 1014
TseFI GTSAC 2 cut(s) 286, 1272
TseI GCWGC 3 cut(s) 157, 500, 1180
Tsp45I GTSAC 2 cut(s) 286, 1272
TspDTI ATGAA 6 cut(s) 114, 549, 813, 1068, 1305, 1504
TspGWI ACGGA 1 cut(s) 14
TspRI CASTG 2 cut(s) 952, 1014
XapI RAATTY 5 cut(s) 505, 737, 828, 861, 1217
XceI RCATGY 1 cut(s) 588
XmiI GTMKAC 1 cut(s) 696
XmnI GAANNNNTTC 1 cut(s) 780
XspI CTAG 5 cut(s) 432, 960, 1250, 1373, 1439
Zsp2I ATGCAT 1 cut(s) 1263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.