Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0016029

Physical Location & Seq

Genomic Coordinates Reverse (-)

34605672 .. 34606499

Gene Structure 828 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024327

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGACGACATCGCCCAAATAAAGCAGCTCAGCTGTCGCCGACGATCAGGGTGTTACTCATTCGTAGACCCACCCTCAAGCCCCCAGTCCTTCTCAAATCCTAAACTCTCCAAACCCCTTCAAAAGTCGGACAATTTCTCCAAACCCTCCTCCACCTACGTCTCCAACTCCCCCCAGAGCACCAAATCTGGGCTAAGCCTTGTAGGCCAAATCGACCCTCGTCAGATCTTGTCTCGGGGTTGTGTCTCCCTAATCGATTCCAACCCGATCCAACAACTGGGTCTCACCCCATCTCCTCCTCTGCCCATCGTCGTCTTCATCAATTCCGCCGTTGTTGAGATGAGATCTGGCATCGCCTCCTTCCTCCTCGTCGTCGTTATCCTCGAGGAGCTTGAATGGTTACTGAGGGGAAGAAGAAGAGAGAGGGAGTCAGCTATTGTCTCTGGTTTTTTGGGTAATAAGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

16.95

Weight (kDa)

9.6

Isoelectric Point (pI)

65.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016029)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13690
fragaria_vesca	FvH4_1g24270
malus_domestica	MD15G1343000.v1.1
pyrus_communis	pycom15g30410
rosa_chinensis	RchiOBHm_Chr2g0120761
rosa_laevigata	RLG00000018578 RLG00000024327
rosa_multiflora	Rmu_sc0000319.1_g000008
rosa_roxburghii	Rroxscaffold_2G00123110
rosa_rugosa	Rorug02G0230900
rosa_samantha	Rh2AG287500 Rh2BG299000 Rh2CG276900 Rh2DG312800
rosa_wichuraiana	Rw2G023060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	383
AccB7I	CCANNNNNTGG	1 cut(s)	277
AccI	GTMKAC	1 cut(s)	66
AciI	CCGC	1 cut(s)	327
AclWI	GGATC	1 cut(s)	262
AfiI	CCNNNNNNNGG	2 cut(s)	189, 277
AgsI	TTSAA	2 cut(s)	122, 395
AluBI	AGCT	4 cut(s)	28, 33, 391, 434
AluI	AGCT	4 cut(s)	28, 33, 391, 434
Alw21I	GWGCWC	1 cut(s)	182
Alw26I	GTCTC	5 cut(s)	166, 237, 250, 287, 445
AlwI	GGATC	1 cut(s)	262
Ama87I	CYCGRG	2 cut(s)	234, 383
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	277
AvaI	CYCGRG	2 cut(s)	234, 383
BbsI	GAAGAC	1 cut(s)	307
Bbv12I	GWGCWC	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	2 cut(s)	298, 314
BceAI	ACGGC	1 cut(s)	314
BcoDI	GTCTC	5 cut(s)	166, 237, 250, 287, 445
BglI	GCCNNNNNGGC	1 cut(s)	204
BglII	AGATCT	2 cut(s)	225, 344
BisI	GCNGC	1 cut(s)	26
BlpI	GCTNAGC	2 cut(s)	29, 194
BlsI	GCNGC	1 cut(s)	27
BmeT110I	CYCGRG	2 cut(s)	234, 383
BmrI	ACTGGG	2 cut(s)	79, 287
BmsI	GCATC	1 cut(s)	360
BmuI	ACTGGG	2 cut(s)	79, 287
BoxI	GACNNNNGTC	1 cut(s)	219
BpiI	GAAGAC	1 cut(s)	307
Bpu1102I	GCTNAGC	2 cut(s)	29, 194
BpuEI	CTTGAG	1 cut(s)	61
Bsa29I	ATCGAT	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	287
BsaXI	ACNNNNNCTCC	4 cut(s)	122, 152, 277, 307
Bsc4I	CCNNNNNNNGG	2 cut(s)	189, 277
Bse1I	ACTGG	2 cut(s)	85, 282
BseCI	ATCGAT	1 cut(s)	255
BseLI	CCNNNNNNNGG	2 cut(s)	189, 277
BseMII	CTCAG	2 cut(s)	43, 395
BseNI	ACTGG	2 cut(s)	85, 282
BseRI	GAGGAG	5 cut(s)	139, 285, 288, 356, 401
BseXI	GCAGC	1 cut(s)	37
BshFI	GGCC	1 cut(s)	207
BshVI	ATCGAT	1 cut(s)	255
BsiHKAI	GWGCWC	1 cut(s)	182
BsiHKCI	CYCGRG	2 cut(s)	234, 383
BslI	CCNNNNNNNGG	2 cut(s)	189, 277
BsmAI	GTCTC	5 cut(s)	166, 237, 250, 287, 445
BsmBI	CGTCTC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	207
Bso31I	GGTCTC	1 cut(s)	287
BsoBI	CYCGRG	2 cut(s)	234, 383
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp143I	GATC	4 cut(s)	44, 225, 267, 344
Bsp1720I	GCTNAGC	2 cut(s)	29, 194
BspACI	CCGC	1 cut(s)	327
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	2 cut(s)	42, 396
BspDI	ATCGAT	1 cut(s)	255
BspPI	GGATC	1 cut(s)	262
BspTNI	GGTCTC	1 cut(s)	287
BsrI	ACTGG	2 cut(s)	85, 282
BssMI	GATC	4 cut(s)	44, 225, 267, 344
Bst6I	CTCTTC	1 cut(s)	412
BstDEI	CTNAG	3 cut(s)	29, 194, 404
BstKTI	GATC	4 cut(s)	47, 228, 270, 347
BstMAI	GTCTC	5 cut(s)	166, 237, 250, 287, 445
BstMBI	GATC	4 cut(s)	44, 225, 267, 344
BstMWI	GCNNNNNNNGC	1 cut(s)	204
BstPAI	GACNNNNGTC	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	37
BstV2I	GAAGAC	1 cut(s)	307
BstX2I	RGATCY	2 cut(s)	225, 344
BstYI	RGATCY	2 cut(s)	225, 344
Bsu15I	ATCGAT	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	207
BsuTUI	ATCGAT	1 cut(s)	255
BtgZI	GCGATG	1 cut(s)	337
ClaI	ATCGAT	1 cut(s)	255
CviJI	RGCY	8 cut(s)	28, 33, 81, 193, 198, 207, 391, 434
CviKI_1	RGCY	8 cut(s)	28, 33, 81, 193, 198, 207, 391, 434
DdeI	CTNAG	3 cut(s)	29, 194, 404
DpnI	GATC	4 cut(s)	46, 227, 269, 346
DpnII	GATC	4 cut(s)	44, 225, 267, 344
Eam1104I	CTCTTC	1 cut(s)	412
EarI	CTCTTC	1 cut(s)	412
EciI	GGCGGA	1 cut(s)	316
Eco31I	GGTCTC	1 cut(s)	287
Eco88I	CYCGRG	2 cut(s)	234, 383
Esp3I	CGTCTC	1 cut(s)	166
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	26
GluI	GCNGC	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	207
HinfI	GANTC	2 cut(s)	257, 428
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	2 cut(s)	130, 225
Hpy8I	GTNNAC	1 cut(s)	67
Hpy99I	CGWCG	4 cut(s)	45, 314, 374, 377
HpyAV	CCTTC	3 cut(s)	100, 128, 370
HpyCH4IV	ACGT	1 cut(s)	159
HpyF10VI	GCNNNNNNNGC	1 cut(s)	204
HpyF3I	CTNAG	3 cut(s)	29, 194, 404
HpySE526I	ACGT	1 cut(s)	159
Kzo9I	GATC	4 cut(s)	44, 225, 267, 344
LmnI	GCTCC	1 cut(s)	388
LpnPI	CCDG	7 cut(s)	33, 98, 174, 188, 263, 333, 429
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	1 cut(s)	360
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	2 cut(s)	53, 399
MalI	GATC	4 cut(s)	46, 227, 269, 346
MboI	GATC	4 cut(s)	44, 225, 267, 344
MboII	GAAGA	4 cut(s)	307, 423, 426, 429
MflI	RGATCY	2 cut(s)	225, 344
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	2 cut(s)	133, 322
MlyI	GAGTC	1 cut(s)	437
MmeI	TCCRAC	4 cut(s)	108, 189, 285, 295
MspA1I	CMGCKG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	204
NdeII	GATC	4 cut(s)	44, 225, 267, 344
PaeR7I	CTCGAG	1 cut(s)	383
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PfeI	GAWTC	1 cut(s)	257
PflMI	CCANNNNNTGG	1 cut(s)	277
PkrI	GCNGC	1 cut(s)	27
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
PshAI	GACNNNNGTC	1 cut(s)	219
PspXI	VCTCGAGB	1 cut(s)	383
PsuI	RGATCY	2 cut(s)	225, 344
PvuII	CAGCTG	1 cut(s)	33
SatI	GCNGC	1 cut(s)	26
Sau3AI	GATC	4 cut(s)	44, 225, 267, 344
SchI	GAGTC	1 cut(s)	437
SduI	GDGCHC	1 cut(s)	182
SetI	ASST	6 cut(s)	30, 35, 158, 162, 393, 436
SfaNI	GCATC	1 cut(s)	360
Sfr274I	CTCGAG	1 cut(s)	383
SlaI	CTCGAG	1 cut(s)	383
SmlI	CTYRAG	2 cut(s)	76, 383
SmoI	CTYRAG	2 cut(s)	76, 383
Sse9I	AATT	2 cut(s)	133, 322
SsiI	CCGC	1 cut(s)	327
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	3 cut(s)	213, 255, 384
TasI	AATT	2 cut(s)	133, 322
TfiI	GAWTC	1 cut(s)	257
TseI	GCWGC	1 cut(s)	25
TspDTI	ATGAA	1 cut(s)	307
Van91I	CCANNNNNTGG	1 cut(s)	277
XhoI	CTCGAG	1 cut(s)	383
XmiI	GTMKAC	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.