AT2G15020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015508
Physical Location & Seq
Reverse (-)
6491425 .. 6493512
2088 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G15020.1

Sequence Viewer

Length: 1581 bp
ATGGACCCATGGTCATGGATATGTGAGCTTCCAGAAGATCCTGAGTTCAGCGAGTCTGATTCACACGCAGTGTTTCAGCTCGCTGGCGATTTGACACGTTCGATCAAACTTAGAGCCGAACGGACTTTGGGTTCTGACCAAGAATCTCACTCTCTCACCTTTACAGTTGTAGCAGAGGGTTTTAACCTCCTTAAGTCGTCGACCATTTGGGTCTCCAACACATGTCCCTTGTCGTCGGAGAAACCGTTCCTCCCTCTTGTTCTCCAGCTTCTTCAAGAACTAATCACCCGTTCCCCTACCACACACGACGGCGCGTGCACAAAGTTTGAACAACTTGAAATCAAACCAAGTCCAGTTAGCTGGGTCATGGACTCTCACTCACCTGAATCCTTCTCATCAGTCTTTAATCTAATCCTCCTCACACGCCTCTTCTGGTTGTGTGTGTTTGACGCGCCAAGCGAAGTAGGCTCTTTCTTCTTCCAACACTTACTAGGTCCACACGTGAACGCGCTTACATGTCAACATGCACCTGTCTTACGGACGTTTCTCGTCTCTCTCGGTGTAGACGCCGAGCTTTGTATTGTACGAGCTGCTTCGTATGCCTTATCCAAATGGATGATCTCTAAAGAGATAGGACTTGGGAATCTTGGTTTGAAACAGTTCAGTAGCAGCCTCATGCCACGTCATTCGTTGGGGTTTTCGTATGCCACAGAAGCTCATGGTCTTTGGATCTTGAAAGGTTATTTCCCAATCTTGTCAATGAACGTCACAAATAATAGCTCTAACGAGGTTCACAACAAGATCGTCAAGTTTCCATTCGTAGAGCCTAAAGAAGCTGTCCTACGTTACGCTTTGTCGCATCAACAAGCTGAAATACTAGTACAGTTTGAATACTCCGTTAAGTTCTATGAGAACTACATAAAAGTAAACGCACGTGTAGACAACATACGCATCCACGTCTCGAAGCTAGGGTTTCACAAAGGAGGAGTTGGCGTGGAGAATCAGATAGCGGATTGTTACTCCGAGGAGAGGTACTTCCCATCACGGGTACGGGTCTGGCTCGGGCCAGAACTCGGGTCCAGCCACGTATCGGGGCTAAGTCTAGGAAGGTCAACGAAGAACGAGGAGAGAGATATCGAGGTGACTAGAGTGCTAAAGGGAAATTTCGGAAAAGGTAAAGTGGCTCCGAGAGTCAAGGCAAGAGCAAGAATGGCAACAAAGAGGAAGGTTAAAGATTGGAGAATAGAGCAGGAAAGCGAAGGAAACGCTGCCGTTTTTGATGCGGTGTTGTACGATAGAGAGAGCGGTCAAGAAGTGACAACCGTTAAGCCGAAGCCAAACCAAGAGGGTTTAAAGAATGTGTTTACGAAGAGTGGGGGGATGGTGTTTGGAAGGGATGAGTATGGAGATGAAGTTGGGTGGAGAGTTGGGAGAGAGATGGAAGGAAGTGTGTTGAAGTGGAGACTGGGTGGCAAAATTTGGCTAACTTATTGGCCAAACAAGTTGAACACTTTGTTTTATGAGACTAGATGTGTAGAGTGGTGTGATGAGGTTGATTTGCCGTTGCTTCCTACTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

526

Amino Acids

59.41

Weight (kDa)

6.72

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015508)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15020
fragaria_vesca FvH4_2g07860
malus_domestica MD00G1109200.v1.1
prunus_persica Prupe.8G137000_v2.0.a1 Prupe.8G137000_v2.0.a1
pyrus_communis pycom05g09120
rosa_chinensis RchiOBHm_Chr6g0262281
rosa_laevigata RLG00000014440
rosa_multiflora Rmu_sc0002510.1_g000031
rosa_roxburghii Rroxscaffold_7G00207970
rosa_rugosa Rorug05G0596200
rosa_samantha Rh6AG116400 Rh6BG110600 Rh6CG108000 Rh6DG098400
rosa_wichuraiana Rw6G010110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1305
AccI GTMKAC 3 cut(s) 200, 564, 939
AccII CGCG 3 cut(s) 314, 452, 509
AciI CCGC 3 cut(s) 1010, 1283, 1305
AclWI GGATC 2 cut(s) 32, 737
AcoI YGGCCR 1 cut(s) 1493
AcsI RAATTY 2 cut(s) 1162, 1476
AcvI CACGTG 2 cut(s) 502, 935
AcyI GRCGYC 1 cut(s) 567
AdeI CACNNNGTG 1 cut(s) 70
AfaI GTAC 5 cut(s) 585, 882, 1034, 1050, 1292
AfiI CCNNNNNNNGG 4 cut(s) 1029, 1045, 1073, 1090
AflII CTTAAG 1 cut(s) 191
AflIII ACRYGT 5 cut(s) 95, 221, 499, 515, 934
AgsI TTSAA 8 cut(s) 275, 329, 338, 655, 736, 890, 1456, 1507
AhdI GACNNNNNGTC 1 cut(s) 10
AhlI ACTAGT 1 cut(s) 877
AjiI CACGTC 2 cut(s) 683, 958
AloI GAACNNNNNNTCC 4 cut(s) 115, 147, 230, 262
Alw21I GWGCWC 1 cut(s) 320
Alw26I GTCTC 5 cut(s) 217, 556, 964, 1456, 1517
Alw44I GTGCAC 1 cut(s) 316
AlwI GGATC 2 cut(s) 32, 737
Ama87I CYCGRG 2 cut(s) 1061, 1073
AoxI GGCC 2 cut(s) 1064, 1493
ApaLI GTGCAC 1 cut(s) 316
ApeKI GCWGC 3 cut(s) 590, 669, 1268
ApoI RAATTY 2 cut(s) 1162, 1476
Asp700I GAANNNNTTC 2 cut(s) 245, 659
AspLEI GCGC 3 cut(s) 314, 454, 511
AspS9I GGNCC 4 cut(s) 4, 494, 1064, 1077
AsuHPI GGTGA 4 cut(s) 148, 277, 372, 1153
AvaI CYCGRG 2 cut(s) 1061, 1073
AvaII GGWCC 3 cut(s) 4, 494, 1077
BaeGI GKGCMC 1 cut(s) 320
BalI TGGCCA 1 cut(s) 1495
BarI GAAGNNNNNNTAC 2 cut(s) 825, 857
BbrPI CACGTG 2 cut(s) 502, 935
Bbv12I GWGCWC 1 cut(s) 320
BbvI GCAGC 3 cut(s) 577, 681, 1255
BccI CCATC 3 cut(s) 1048, 1375, 1432
BceAI ACGGC 3 cut(s) 325, 1256, 1546
BcoDI GTCTC 5 cut(s) 217, 556, 964, 1456, 1517
BcuI ACTAGT 1 cut(s) 877
BfaI CTAG 6 cut(s) 491, 878, 968, 1103, 1146, 1527
BfrI CTTAAG 1 cut(s) 191
BisI GCNGC 3 cut(s) 591, 670, 1269
BlsI GCNGC 3 cut(s) 592, 671, 1270
Bme18I GGWCC 3 cut(s) 4, 494, 1077
BmeRI GACNNNNNGTC 1 cut(s) 10
BmeT110I CYCGRG 2 cut(s) 1061, 1073
BmgBI CACGTC 2 cut(s) 683, 958
BmgT120I GGNCC 4 cut(s) 4, 494, 1064, 1077
BmiI GGNNCC 3 cut(s) 6, 1078, 1185
BmrI ACTGGG 1 cut(s) 1475
BmsI GCATC 3 cut(s) 868, 960, 1270
BmuI ACTGGG 1 cut(s) 1475
BpmI CTGGAG 1 cut(s) 248
BsaAI YACGTR 3 cut(s) 502, 935, 1087
BsaHI GRCGYC 1 cut(s) 567
BsaI GGTCTC 1 cut(s) 217
BsaJI CCNNGG 2 cut(s) 8, 1023
Bsc4I CCNNNNNNNGG 4 cut(s) 1029, 1045, 1073, 1090
Bse1I ACTGG 2 cut(s) 353, 1470
BseDI CCNNGG 2 cut(s) 8, 1023
BseGI GGATG 4 cut(s) 621, 951, 1386, 1402
BseLI CCNNNNNNNGG 4 cut(s) 1029, 1045, 1073, 1090
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 2 cut(s) 353, 1470
BseRI GAGGAG 4 cut(s) 407, 999, 1040, 1139
BseSI GKGCMC 1 cut(s) 320
BseXI GCAGC 3 cut(s) 577, 681, 1255
BseYI CCCAGC 1 cut(s) 360
Bsh1236I CGCG 3 cut(s) 314, 452, 509
BshFI GGCC 2 cut(s) 1066, 1495
BsiHKAI GWGCWC 1 cut(s) 320
BsiHKCI CYCGRG 2 cut(s) 1061, 1073
BslFI GGGAC 1 cut(s) 210
BslI CCNNNNNNNGG 4 cut(s) 1029, 1045, 1073, 1090
BsmAI GTCTC 5 cut(s) 217, 556, 964, 1456, 1517
BsmBI CGTCTC 2 cut(s) 556, 964
BsmFI GGGAC 1 cut(s) 210
BsnI GGCC 2 cut(s) 1066, 1495
Bso31I GGTCTC 1 cut(s) 217
BsoBI CYCGRG 2 cut(s) 1061, 1073
Bsp1286I GDGCHC 1 cut(s) 320
Bsp143I GATC 5 cut(s) 37, 102, 618, 729, 801
Bsp19I CCATGG 1 cut(s) 8
BspACI CCGC 3 cut(s) 1010, 1283, 1305
BspANI GGCC 2 cut(s) 1066, 1495
BspCNI CTCAG 1 cut(s) 34
BspFNI CGCG 3 cut(s) 314, 452, 509
BspLI GGNNCC 3 cut(s) 6, 1078, 1185
BspPI GGATC 2 cut(s) 32, 737
BspTI CTTAAG 1 cut(s) 191
BspTNI GGTCTC 1 cut(s) 217
BsrBI CCGCTC 1 cut(s) 1305
BsrI ACTGG 2 cut(s) 353, 1470
BssECI CCNNGG 2 cut(s) 8, 1023
BssMI GATC 5 cut(s) 37, 102, 618, 729, 801
BssNI GRCGYC 1 cut(s) 567
BssT1I CCWWGG 1 cut(s) 8
Bst4CI ACNGT 5 cut(s) 166, 246, 660, 885, 1324
Bst6I CTCTTC 2 cut(s) 434, 1364
BstACI GRCGYC 1 cut(s) 567
BstAFI CTTAAG 1 cut(s) 191
BstBAI YACGTR 3 cut(s) 502, 935, 1087
BstC8I GCNNGC 3 cut(s) 81, 85, 316
BstDEI CTNAG 4 cut(s) 42, 110, 1097, 1578
BstDSI CCRYGG 1 cut(s) 8
BstF5I GGATG 4 cut(s) 621, 951, 1386, 1402
BstFNI CGCG 3 cut(s) 314, 452, 509
BstHHI GCGC 3 cut(s) 314, 454, 511
BstKTI GATC 5 cut(s) 40, 105, 621, 732, 804
BstMAI GTCTC 5 cut(s) 217, 556, 964, 1456, 1517
BstMBI GATC 5 cut(s) 37, 102, 618, 729, 801
BstMWI GCNNNNNNNGC 4 cut(s) 465, 599, 713, 1211
BstNSI RCATGY 3 cut(s) 225, 519, 527
BstSLI GKGCMC 1 cut(s) 320
BstUI CGCG 3 cut(s) 314, 452, 509
BstV1I GCAGC 3 cut(s) 577, 681, 1255
BstX2I RGATCY 2 cut(s) 37, 729
BstXI CCANNNNNNTGG 2 cut(s) 15, 360
BstYI RGATCY 2 cut(s) 37, 729
BsuRI GGCC 2 cut(s) 1066, 1495
BtgI CCRYGG 1 cut(s) 8
BtrI CACGTC 2 cut(s) 683, 958
BtsCI GGATG 4 cut(s) 621, 951, 1386, 1402
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 3 cut(s) 81, 85, 316
CfoI GCGC 3 cut(s) 314, 454, 511
Cfr13I GGNCC 4 cut(s) 4, 494, 1064, 1077
CseI GACGC 2 cut(s) 458, 575
Csp6I GTAC 5 cut(s) 584, 881, 1033, 1049, 1291
CviAII CATG 8 cut(s) 9, 15, 222, 367, 516, 524, 676, 719
CviQI GTAC 5 cut(s) 584, 881, 1033, 1049, 1291
DdeI CTNAG 4 cut(s) 42, 110, 1097, 1578
DpnI GATC 5 cut(s) 39, 104, 620, 731, 803
DpnII GATC 5 cut(s) 37, 102, 618, 729, 801
DraI TTTAAA 1 cut(s) 1353
DraIII CACNNNGTG 1 cut(s) 70
DriI GACNNNNNGTC 1 cut(s) 10
EaeI YGGCCR 1 cut(s) 1493
Eam1104I CTCTTC 2 cut(s) 434, 1364
Eam1105I GACNNNNNGTC 1 cut(s) 10
EarI CTCTTC 2 cut(s) 434, 1364
Eco130I CCWWGG 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 217
Eco32I GATATC 1 cut(s) 1135
Eco47I GGWCC 3 cut(s) 4, 494, 1077
Eco72I CACGTG 2 cut(s) 502, 935
Eco88I CYCGRG 2 cut(s) 1061, 1073
EcoRV GATATC 1 cut(s) 1135
EcoT14I CCWWGG 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 8
Esp3I CGTCTC 2 cut(s) 556, 964
FaeI CATG 8 cut(s) 12, 18, 225, 370, 519, 527, 679, 722
FaqI GGGAC 1 cut(s) 210
FatI CATG 8 cut(s) 8, 14, 221, 366, 515, 523, 675, 718
FblI GTMKAC 3 cut(s) 200, 564, 939
Fnu4HI GCNGC 3 cut(s) 591, 670, 1269
FokI GGATG 4 cut(s) 628, 938, 1393, 1409
Fsp4HI GCNGC 3 cut(s) 591, 670, 1269
FspBI CTAG 6 cut(s) 491, 878, 968, 1103, 1146, 1527
GlaI GCGC 3 cut(s) 313, 453, 510
GluI GCNGC 3 cut(s) 591, 670, 1269
GsaI CCCAGC 1 cut(s) 364
GsuI CTGGAG 1 cut(s) 248
HaeIII GGCC 2 cut(s) 1066, 1495
HgaI GACGC 2 cut(s) 458, 575
HhaI GCGC 3 cut(s) 314, 454, 511
Hin1I GRCGYC 1 cut(s) 567
Hin1II CATG 8 cut(s) 12, 18, 225, 370, 519, 527, 679, 722
Hin6I GCGC 3 cut(s) 312, 452, 509
HinP1I GCGC 3 cut(s) 312, 452, 509
HincII GTYRAC 3 cut(s) 201, 521, 1113
HindII GTYRAC 3 cut(s) 201, 521, 1113
HinfI GANTC 8 cut(s) 53, 59, 143, 371, 386, 643, 1000, 1191
HphI GGTGA 4 cut(s) 148, 277, 372, 1153
Hpy188I TCNGA 7 cut(s) 58, 136, 238, 1005, 1024, 1169, 1188
Hpy188III TCNNGA 6 cut(s) 32, 41, 275, 733, 961, 1310
Hpy99I CGWCG 3 cut(s) 202, 238, 311
HpyAV CCTTC 6 cut(s) 400, 1101, 1219, 1253, 1386, 1436
HpyCH4III ACNGT 5 cut(s) 166, 246, 660, 885, 1324
HpyCH4IV ACGT 9 cut(s) 97, 501, 542, 682, 765, 844, 934, 957, 1086
HpyCH4V TGCA 2 cut(s) 318, 527
HpyF10VI GCNNNNNNNGC 4 cut(s) 465, 599, 713, 1211
HpyF3I CTNAG 4 cut(s) 42, 110, 1097, 1578
HpySE526I ACGT 9 cut(s) 97, 501, 542, 682, 765, 844, 934, 957, 1086
Hsp92I GRCGYC 1 cut(s) 567
Hsp92II CATG 8 cut(s) 12, 18, 225, 370, 519, 527, 679, 722
HspAI GCGC 3 cut(s) 312, 452, 509
Kzo9I GATC 5 cut(s) 37, 102, 618, 729, 801
LmnI GCTCC 1 cut(s) 1189
Lsp1109I GCAGC 3 cut(s) 577, 681, 1255
LweI GCATC 3 cut(s) 868, 960, 1270
MaeI CTAG 6 cut(s) 491, 878, 968, 1103, 1146, 1527
MaeII ACGT 9 cut(s) 97, 501, 542, 682, 765, 844, 934, 957, 1086
MaeIII GTNAC 5 cut(s) 766, 845, 1016, 1141, 1315
MalI GATC 5 cut(s) 39, 104, 620, 731, 803
MbiI CCGCTC 1 cut(s) 1305
MboI GATC 5 cut(s) 37, 102, 618, 729, 801
MboII GAAGA 7 cut(s) 47, 263, 421, 466, 469, 1129, 1381
MflI RGATCY 2 cut(s) 37, 729
MhlI GDGCHC 1 cut(s) 320
MlsI TGGCCA 1 cut(s) 1495
MluCI AATT 2 cut(s) 1162, 1476
MluNI TGGCCA 1 cut(s) 1495
MlyI GAGTC 3 cut(s) 62, 365, 1200
MmeI TCCRAC 3 cut(s) 216, 240, 505
Mox20I TGGCCA 1 cut(s) 1495
MroXI GAANNNNTTC 2 cut(s) 245, 659
MscI TGGCCA 1 cut(s) 1495
MseI TTAA 7 cut(s) 183, 192, 405, 900, 1230, 1326, 1352
MslI CAYNNNNRTG 2 cut(s) 13, 19
Msp20I TGGCCA 1 cut(s) 1495
MspCI CTTAAG 1 cut(s) 191
MvnI CGCG 3 cut(s) 314, 452, 509
MwoI GCNNNNNNNGC 4 cut(s) 465, 599, 713, 1211
NcoI CCATGG 1 cut(s) 8
NdeII GATC 5 cut(s) 37, 102, 618, 729, 801
NlaIII CATG 8 cut(s) 12, 18, 225, 370, 519, 527, 679, 722
NlaIV GGNNCC 3 cut(s) 6, 1078, 1185
NmeAIII GCCGAG 1 cut(s) 595
NmuCI GTSAC 3 cut(s) 766, 1141, 1315
NspI RCATGY 3 cut(s) 225, 519, 527
PciI ACATGT 2 cut(s) 221, 515
PcsI WCGNNNNNNNCGW 2 cut(s) 242, 456
PdmI GAANNNNTTC 2 cut(s) 245, 659
PfeI GAWTC 5 cut(s) 59, 143, 386, 643, 1000
PkrI GCNGC 3 cut(s) 592, 671, 1270
PleI GAGTC 3 cut(s) 61, 365, 1199
PmaCI CACGTG 2 cut(s) 502, 935
PmlI CACGTG 2 cut(s) 502, 935
PpsI GAGTC 3 cut(s) 61, 365, 1199
Ppu21I YACGTR 3 cut(s) 502, 935, 1087
PscI ACATGT 2 cut(s) 221, 515
PspCI CACGTG 2 cut(s) 502, 935
PspFI CCCAGC 1 cut(s) 360
PspN4I GGNNCC 3 cut(s) 6, 1078, 1185
PspPI GGNCC 4 cut(s) 4, 494, 1064, 1077
PsuI RGATCY 2 cut(s) 37, 729
RsaI GTAC 5 cut(s) 585, 882, 1034, 1050, 1292
RsaNI GTAC 5 cut(s) 584, 881, 1033, 1049, 1291
RseI CAYNNNNRTG 2 cut(s) 13, 19
SalI GTCGAC 1 cut(s) 199
SaqAI TTAA 7 cut(s) 183, 192, 405, 900, 1230, 1326, 1352
SatI GCNGC 3 cut(s) 591, 670, 1269
Sau3AI GATC 5 cut(s) 37, 102, 618, 729, 801
Sau96I GGNCC 4 cut(s) 4, 494, 1064, 1077
SchI GAGTC 3 cut(s) 62, 365, 1200
SduI GDGCHC 1 cut(s) 320
SfaNI GCATC 3 cut(s) 868, 960, 1270
SinI GGWCC 3 cut(s) 4, 494, 1077
SmiMI CAYNNNNRTG 2 cut(s) 13, 19
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
SpeI ACTAGT 1 cut(s) 877
Sse9I AATT 2 cut(s) 1162, 1476
SsiI CCGC 3 cut(s) 1010, 1283, 1305
SspMI CTAG 6 cut(s) 491, 878, 968, 1103, 1146, 1527
StyI CCWWGG 1 cut(s) 8
TaaI ACNGT 5 cut(s) 166, 246, 660, 885, 1324
TaiI ACGT 9 cut(s) 100, 504, 545, 685, 768, 847, 937, 960, 1089
TaqI TCGA 4 cut(s) 101, 200, 962, 1137
TasI AATT 2 cut(s) 1162, 1476
TatI WGTACW 1 cut(s) 880
TfiI GAWTC 5 cut(s) 59, 143, 386, 643, 1000
Tru1I TTAA 7 cut(s) 183, 192, 405, 900, 1230, 1326, 1352
Tru9I TTAA 7 cut(s) 183, 192, 405, 900, 1230, 1326, 1352
TscAI CASTG 1 cut(s) 75
TseFI GTSAC 3 cut(s) 766, 1141, 1315
TseI GCWGC 3 cut(s) 590, 669, 1268
Tsp45I GTSAC 3 cut(s) 766, 1141, 1315
TspDTI ATGAA 2 cut(s) 776, 1425
TspGWI ACGGA 3 cut(s) 136, 553, 886
TspRI CASTG 1 cut(s) 75
Vha464I CTTAAG 1 cut(s) 191
VneI GTGCAC 1 cut(s) 316
VpaK11BI GGWCC 3 cut(s) 4, 494, 1077
XapI RAATTY 2 cut(s) 1162, 1476
XceI RCATGY 3 cut(s) 225, 519, 527
XmiI GTMKAC 3 cut(s) 200, 564, 939
XmnI GAANNNNTTC 2 cut(s) 245, 659
XspI CTAG 6 cut(s) 491, 878, 968, 1103, 1146, 1527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.