MD00G1109200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0015508
Physical Location & Seq
Reverse (-)
22914935 .. 22915771
837 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1109200.v1.1.491

Sequence Viewer

Length: 837 bp
ATGGGGATGAAAACCACGCGCTCAGCCGCCAGCACGAATCGGAAAAATCAGTTTCCGGCGTTGGTAACCAGAGACTCGGTGCTAAAGTACACCCTGGCGCACCAGCAGCTGGAGGCGGTCGTTCAGGTAGAATATTCTGTTGGATTTTACGATGGGTTTATTCAGGTGACGGCACGTGTCGACAATCTCCGCTTTCACGTGGTGAATCTCGGATTTAACAAAGACGACGACGTGGACTACGCGGAGGAGAAGTATTTCCCATCGAGGATTCGGGTCTGGGTCGGGCCGGAAGTCGGGGCGAACTACGTGAACGGGTTGAGCCTGGGCCGGTCCACGGACAACGTGGAGAAAGAAGTGAAAACGCAGAGAGTGATGAAGGGCGGTTTCGAAAAATCAAAGGTTCCAAATATGAAGGCCACGGCGAGGATGTCGACGAGGATGAGGAAGAGGAACTGGAGGTGGGACCAGGACGCGGAGGGAAACGCGGCGGTTTTCGACGCCGTGCTGTGTGACAACACGACGGGGCATGAAGTGGCCACGTGGAAGCCGGATACTGATGGCGGGAACGGCGAGGGTTTGAGAAGGCGATACGAGGGGGCGAACAGGCCATTTACCAAAACGGGGAGTTTGGTGCTGAGCGGGGACGAGTACGGCGACGGAGTTGGGTGGAGGTTGAACAGGGAGATGGAAGGGAGTGTGTTGAAGTGGAGAATTGGCGGGAAAGTGTGGTTGAGTTACTTGGCGAACGAGGTGAAGGGTTCGTATTTTGAGACGAGGTGTGTGGAGTGGTGTGATGAGGTTGATTTGCCTTTGATTCTTGGTAAATTAAGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

279

Amino Acids

31.38

Weight (kDa)

8.62

Isoelectric Point (pI)

25.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015508)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15020
fragaria_vesca FvH4_2g07860
malus_domestica MD00G1109200.v1.1
prunus_persica Prupe.8G137000_v2.0.a1 Prupe.8G137000_v2.0.a1
pyrus_communis pycom05g09120
rosa_chinensis RchiOBHm_Chr6g0262281
rosa_laevigata RLG00000014440
rosa_multiflora Rmu_sc0002510.1_g000031
rosa_roxburghii Rroxscaffold_7G00207970
rosa_rugosa Rorug05G0596200
rosa_samantha Rh6AG116400 Rh6BG110600 Rh6CG108000 Rh6DG098400
rosa_wichuraiana Rw6G010110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 109
AccBSI CCGCTC 1 cut(s) 639
AccI GTMKAC 2 cut(s) 180, 431
AccII CGCG 4 cut(s) 19, 242, 473, 485
AcoI YGGCCR 1 cut(s) 534
AcvI CACGTG 3 cut(s) 176, 199, 540
AcyI GRCGYC 1 cut(s) 498
AdeI CACNNNGTG 1 cut(s) 202
AfaI GTAC 2 cut(s) 89, 650
AfiI CCNNNNNNNGG 6 cut(s) 109, 293, 334, 423, 472, 621
AflIII ACRYGT 1 cut(s) 175
AgsI TTSAA 2 cut(s) 676, 703
AjiI CACGTC 1 cut(s) 232
AjnI CCWGG 3 cut(s) 93, 321, 465
AjuI GAANNNNNNNTTGG 2 cut(s) 123, 155
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
Alw26I GTCTC 2 cut(s) 66, 764
AlwNI CAGNNNCTG 1 cut(s) 109
AoxI GGCC 5 cut(s) 284, 325, 414, 534, 605
ApeKI GCWGC 1 cut(s) 106
Asp700I GAANNNNTTC 1 cut(s) 254
AspLEI GCGC 2 cut(s) 21, 100
AspS9I GGNCC 4 cut(s) 284, 325, 330, 463
AsuHPI GGTGA 3 cut(s) 178, 214, 763
AsuII TTCGAA 1 cut(s) 387
AvaII GGWCC 2 cut(s) 330, 463
BalI TGGCCA 1 cut(s) 536
BbrPI CACGTG 3 cut(s) 176, 199, 540
BbvI GCAGC 1 cut(s) 118
BccI CCATC 4 cut(s) 146, 268, 551, 679
BceAI ACGGC 5 cut(s) 186, 435, 485, 583, 667
BciT130I CCWGG 3 cut(s) 95, 323, 467
BciVI GTATCC 1 cut(s) 544
BcoDI GTCTC 2 cut(s) 66, 764
BfuI GTATCC 1 cut(s) 544
BisI GCNGC 3 cut(s) 27, 107, 486
BlpI GCTNAGC 2 cut(s) 22, 635
BlsI GCNGC 3 cut(s) 28, 108, 487
Bme1390I CCNGG 3 cut(s) 95, 323, 467
Bme18I GGWCC 2 cut(s) 330, 463
BmgBI CACGTC 1 cut(s) 232
BmgT120I GGNCC 4 cut(s) 284, 325, 330, 463
BmiI GGNNCC 2 cut(s) 402, 464
BmrFI CCNGG 3 cut(s) 95, 323, 467
BpmI CTGGAG 2 cut(s) 131, 475
Bpu1102I GCTNAGC 2 cut(s) 22, 635
Bpu14I TTCGAA 1 cut(s) 387
BsaAI YACGTR 4 cut(s) 176, 199, 307, 540
BsaHI GRCGYC 1 cut(s) 498
BsaJI CCNNGG 4 cut(s) 93, 322, 333, 417
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bsc4I CCNNNNNNNGG 6 cut(s) 109, 293, 334, 423, 472, 621
Bse118I RCCGGY 1 cut(s) 327
Bse1I ACTGG 1 cut(s) 458
BseBI CCWGG 3 cut(s) 95, 323, 467
BseDI CCNNGG 4 cut(s) 93, 322, 333, 417
BseGI GGATG 3 cut(s) 12, 432, 444
BseLI CCNNNNNNNGG 6 cut(s) 109, 293, 334, 423, 472, 621
BseMII CTCAG 2 cut(s) 36, 626
BseNI ACTGG 1 cut(s) 458
BseRI GAGGAG 1 cut(s) 260
BseXI GCAGC 1 cut(s) 118
Bsh1236I CGCG 4 cut(s) 19, 242, 473, 485
Bsh1285I CGRYCG 1 cut(s) 120
BshFI GGCC 5 cut(s) 286, 327, 416, 536, 607
BsiEI CGRYCG 1 cut(s) 120
BsiSI CCGG 4 cut(s) 56, 287, 328, 548
BslFI GGGAC 2 cut(s) 476, 656
BslI CCNNNNNNNGG 6 cut(s) 109, 293, 334, 423, 472, 621
BsmAI GTCTC 2 cut(s) 66, 764
BsmBI CGTCTC 1 cut(s) 764
BsmFI GGGAC 2 cut(s) 476, 656
BsnI GGCC 5 cut(s) 286, 327, 416, 536, 607
Bsp119I TTCGAA 1 cut(s) 387
Bsp1720I GCTNAGC 2 cut(s) 22, 635
BspANI GGCC 5 cut(s) 286, 327, 416, 536, 607
BspCNI CTCAG 2 cut(s) 35, 627
BspFNI CGCG 4 cut(s) 19, 242, 473, 485
BspLI GGNNCC 2 cut(s) 402, 464
BspT104I TTCGAA 1 cut(s) 387
BsrBI CCGCTC 1 cut(s) 639
BsrFI RCCGGY 1 cut(s) 327
BsrI ACTGG 1 cut(s) 458
BssAI RCCGGY 1 cut(s) 327
BssECI CCNNGG 4 cut(s) 93, 322, 333, 417
BssNI GRCGYC 1 cut(s) 498
Bst2UI CCWGG 3 cut(s) 95, 323, 467
Bst6I CTCTTC 1 cut(s) 440
BstACI GRCGYC 1 cut(s) 498
BstBAI YACGTR 4 cut(s) 176, 199, 307, 540
BstBI TTCGAA 1 cut(s) 387
BstC8I GCNNGC 1 cut(s) 31
BstDEI CTNAG 2 cut(s) 22, 635
BstDSI CCRYGG 2 cut(s) 333, 417
BstEII GGTNACC 1 cut(s) 64
BstF5I GGATG 3 cut(s) 12, 432, 444
BstFNI CGCG 4 cut(s) 19, 242, 473, 485
BstHHI GCGC 2 cut(s) 21, 100
BstMAI GTCTC 2 cut(s) 66, 764
BstMCI CGRYCG 1 cut(s) 120
BstMWI GCNNNNNNNGC 2 cut(s) 106, 567
BstNI CCWGG 3 cut(s) 95, 323, 467
BstPI GGTNACC 1 cut(s) 64
BstSCI CCNGG 3 cut(s) 93, 321, 465
BstUI CGCG 4 cut(s) 19, 242, 473, 485
BstV1I GCAGC 1 cut(s) 118
BsuI GTATCC 1 cut(s) 544
BsuRI GGCC 5 cut(s) 286, 327, 416, 536, 607
BtgI CCRYGG 2 cut(s) 333, 417
BtrI CACGTC 1 cut(s) 232
BtsCI GGATG 3 cut(s) 12, 432, 444
Cac8I GCNNGC 1 cut(s) 31
CaiI CAGNNNCTG 1 cut(s) 109
CfoI GCGC 2 cut(s) 21, 100
Cfr10I RCCGGY 1 cut(s) 327
Cfr13I GGNCC 4 cut(s) 284, 325, 330, 463
CseI GACGC 2 cut(s) 479, 506
Csp6I GTAC 2 cut(s) 88, 649
CviAII CATG 1 cut(s) 527
CviJI RGCY 9 cut(s) 26, 109, 286, 321, 327, 416, 536, 547, 607
CviKI_1 RGCY 9 cut(s) 26, 109, 286, 321, 327, 416, 536, 547, 607
CviQI GTAC 2 cut(s) 88, 649
DdeI CTNAG 2 cut(s) 22, 635
DraIII CACNNNGTG 1 cut(s) 202
EaeI YGGCCR 1 cut(s) 534
Eam1104I CTCTTC 1 cut(s) 440
EarI CTCTTC 1 cut(s) 440
Eco47I GGWCC 2 cut(s) 330, 463
Eco72I CACGTG 3 cut(s) 176, 199, 540
Eco91I GGTNACC 1 cut(s) 64
EcoO65I GGTNACC 1 cut(s) 64
EcoRII CCWGG 3 cut(s) 93, 321, 465
Esp3I CGTCTC 1 cut(s) 764
FaeI CATG 1 cut(s) 530
FaiI YATR 2 cut(s) 410, 528
FaqI GGGAC 2 cut(s) 476, 656
FatI CATG 1 cut(s) 526
FauI CCCGC 3 cut(s) 554, 632, 710
FblI GTMKAC 2 cut(s) 180, 431
Fnu4HI GCNGC 3 cut(s) 27, 107, 486
FokI GGATG 3 cut(s) 19, 439, 451
Fsp4HI GCNGC 3 cut(s) 27, 107, 486
GlaI GCGC 2 cut(s) 20, 99
GluI GCNGC 3 cut(s) 27, 107, 486
GsuI CTGGAG 2 cut(s) 131, 475
HaeIII GGCC 5 cut(s) 286, 327, 416, 536, 607
HapII CCGG 4 cut(s) 56, 287, 328, 548
HgaI GACGC 2 cut(s) 479, 506
HhaI GCGC 2 cut(s) 21, 100
Hin1I GRCGYC 1 cut(s) 498
Hin1II CATG 1 cut(s) 530
Hin6I GCGC 2 cut(s) 19, 98
HinP1I GCGC 2 cut(s) 19, 98
HincII GTYRAC 2 cut(s) 181, 432
HindII GTYRAC 2 cut(s) 181, 432
HinfI GANTC 5 cut(s) 37, 74, 205, 268, 814
HpaII CCGG 4 cut(s) 56, 287, 328, 548
HphI GGTGA 3 cut(s) 178, 214, 763
Hpy166II GTNNAC 6 cut(s) 90, 181, 235, 310, 333, 432
Hpy188I TCNGA 2 cut(s) 42, 212
Hpy8I GTNNAC 6 cut(s) 90, 181, 235, 310, 333, 432
Hpy99I CGWCG 6 cut(s) 230, 233, 436, 500, 523, 659
HpyAV CCTTC 5 cut(s) 370, 406, 576, 683, 748
HpyCH4IV ACGT 6 cut(s) 175, 198, 231, 306, 342, 539
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 567
HpyF3I CTNAG 2 cut(s) 22, 635
HpySE526I ACGT 6 cut(s) 175, 198, 231, 306, 342, 539
Hsp92I GRCGYC 1 cut(s) 498
Hsp92II CATG 1 cut(s) 530
HspAI GCGC 2 cut(s) 19, 98
Lsp1109I GCAGC 1 cut(s) 118
MaeII ACGT 6 cut(s) 175, 198, 231, 306, 342, 539
MaeIII GTNAC 4 cut(s) 64, 166, 509, 734
MbiI CCGCTC 1 cut(s) 639
MboII GAAGA 1 cut(s) 457
MlsI TGGCCA 1 cut(s) 536
MluCI AATT 2 cut(s) 711, 824
MluNI TGGCCA 1 cut(s) 536
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 1 cut(s) 121
Mox20I TGGCCA 1 cut(s) 536
MroXI GAANNNNTTC 1 cut(s) 254
MscI TGGCCA 1 cut(s) 536
MseI TTAA 2 cut(s) 216, 827
Msp20I TGGCCA 1 cut(s) 536
MspA1I CMGCKG 1 cut(s) 109
MspI CCGG 4 cut(s) 56, 287, 328, 548
MspR9I CCNGG 3 cut(s) 95, 323, 467
MvaI CCWGG 3 cut(s) 95, 323, 467
MvnI CGCG 4 cut(s) 19, 242, 473, 485
MwoI GCNNNNNNNGC 2 cut(s) 106, 567
NlaIII CATG 1 cut(s) 530
NlaIV GGNNCC 2 cut(s) 402, 464
NmuCI GTSAC 2 cut(s) 166, 509
NspV TTCGAA 1 cut(s) 387
PcsI WCGNNNNNNNCGW 1 cut(s) 651
PdmI GAANNNNTTC 1 cut(s) 254
PfeI GAWTC 4 cut(s) 37, 205, 268, 814
PflMI CCANNNNNTGG 1 cut(s) 109
PkrI GCNGC 3 cut(s) 28, 108, 487
PleI GAGTC 1 cut(s) 68
PmaCI CACGTG 3 cut(s) 176, 199, 540
PmlI CACGTG 3 cut(s) 176, 199, 540
PpsI GAGTC 1 cut(s) 68
Ppu21I YACGTR 4 cut(s) 176, 199, 307, 540
Psp6I CCWGG 3 cut(s) 93, 321, 465
PspCI CACGTG 3 cut(s) 176, 199, 540
PspEI GGTNACC 1 cut(s) 64
PspGI CCWGG 3 cut(s) 93, 321, 465
PspN4I GGNNCC 2 cut(s) 402, 464
PspPI GGNCC 4 cut(s) 284, 325, 330, 463
PstNI CAGNNNCTG 1 cut(s) 109
PvuII CAGCTG 1 cut(s) 109
RsaI GTAC 2 cut(s) 89, 650
RsaNI GTAC 2 cut(s) 88, 649
SalI GTCGAC 2 cut(s) 179, 430
SaqAI TTAA 2 cut(s) 216, 827
SatI GCNGC 3 cut(s) 27, 107, 486
Sau96I GGNCC 4 cut(s) 284, 325, 330, 463
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 3 cut(s) 95, 323, 467
SfuI TTCGAA 1 cut(s) 387
SinI GGWCC 2 cut(s) 330, 463
Sse9I AATT 2 cut(s) 711, 824
SspI AATATT 1 cut(s) 134
StyD4I CCNGG 3 cut(s) 93, 321, 465
TaiI ACGT 6 cut(s) 178, 201, 234, 309, 345, 542
TaqI TCGA 5 cut(s) 180, 263, 387, 431, 495
TasI AATT 2 cut(s) 711, 824
TatI WGTACW 1 cut(s) 87
TauI GCSGC 2 cut(s) 29, 488
TfiI GAWTC 4 cut(s) 37, 205, 268, 814
Tru1I TTAA 2 cut(s) 216, 827
Tru9I TTAA 2 cut(s) 216, 827
TseFI GTSAC 2 cut(s) 166, 509
TseI GCWGC 1 cut(s) 106
Tsp45I GTSAC 2 cut(s) 166, 509
TspDTI ATGAA 4 cut(s) 23, 389, 425, 543
TspGWI ACGGA 2 cut(s) 350, 672
Van91I CCANNNNNTGG 1 cut(s) 109
VpaK11BI GGWCC 2 cut(s) 330, 463
XcmI CCANNNNNNNNNTGG 1 cut(s) 340
XmiI GTMKAC 2 cut(s) 180, 431
XmnI GAANNNNTTC 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.