AT2G15320

Leucine-rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014453
Physical Location & Seq
Reverse (-)
6666286 .. 6668046
1761 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G15320.1

Sequence Viewer

Length: 1149 bp
ATGACTTGCCTTCTTCTTCTTCTCCTCCTCCTCCTCTTCTCCTCTGCCGACTCTCTGACGTCACCATCCGACGTGTCAGCTTTAAAAGCTTTCAAAGCCACCGTGAAACCCAACTCAATCCCACCGTGGTCTTGTCTCGCTAGCTGGGACTTTACTGTCTCCGACCCATGTGCTTCACCACGTCGAACACATTTCACTTGCGGCATCACTTGCTCGTCTGACTCCACACGTGTGACCCAACTCACTCTCGACCCAGCCGGGTACACGGGTCGTCTCACGCCTCTCATCTCCGGCCTCACAGAGCTTCTCACGCTCGATCTCGCCGAGAACAACTTCTACGGCCTAATCCCATCCTCCATCTCCTCCCTCACCAGCCTCAAGACCTTGATCCTCCGATCCAACTCGTTTTCCGGGTCATTACCCGACTCAGTAACTCGACTCAACTCACTCGAATCCATTGACATATCTCACAACTCTCTCACCGGGCCGCTTCCAAAAACAATGAACTCGCTTTCAAATCTCCGACAACTCGATCTTAGCTACAACAAGCTCACCGGAGCCATCCCAAAGCTTCCGAAAAACCTCATCGATTTAGCTTTAAAGGCGAATACTTTATCAGGACCCATCTCAAAAGACTCATTCACCGAGTCAACTCAGCTCGAAATCGTCGAAATCGCTGAGAACTCATTCACCGGAACACTCGGAGCTTGGTTCTTCCTACTTGAATCAATCCAACAAGTCGATCTAGCGAACAACACTCTCACAGGCATCGAAGTCCTCCCTCCAAACCTCGCCGGAGAAAACAACCTCGTAGCTGTAGAGCTAGGATTCAACCAAATCAGAGGAAACGCTCCGGCGAGTTTCGCGGCGTATCCAAGACTTTCTTCACTATCTATGAGATACAACGTGCTTCACGGTGTTATACCGTCGGAATACGAACGGAGCAAGACATTAAGACGGCTTTACTTAGACGGGAACTTCTTGACGGGAAAACCTCCGGCGAGATTTGTGAGAACAGACGCAGAAGTAATGGGAAGTTTGGGGAATAATTGTCTACAGGGATGTCCAGGGAAAGCTAAGATGTGTGCTCCATCGCAGAAACCATTTTACATTTGTAAGCAAGCTTATGGTGGAAAACCAAAGTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

382

Amino Acids

41.22

Weight (kDa)

8.51

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 92 - 249 4.7e-09 Leucine-rich repeat region
LRR_8 PF13855 125 - 184 2.4e-09 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15320
fragaria_vesca FvH4_2g05350
malus_domestica MD05G1087700.v1.1
prunus_persica Prupe.8G133500_v2.0.a1
pyrus_communis pycom05g08720
rosa_chinensis RchiOBHm_Chr6g0255611
rosa_laevigata RLG00000014827
rosa_multiflora Rmu_co8324351.1_g000001 Rmu_sc0010421.1_g000006 Rmu_sc0015454.1_g000005
rosa_roxburghii Rroxscaffold_7G00209850
rosa_rugosa Rorug05G0559700
rosa_samantha Rh6AG078300 Rh6BG070600 Rh6CG069200 Rh6DG066200
rosa_wichuraiana Rw6G006600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 155
AatII GACGTC 1 cut(s) 62
AccI GTMKAC 1 cut(s) 1054
AccII CGCG 1 cut(s) 866
AciI CCGC 3 cut(s) 201, 488, 866
AclWI GGATC 2 cut(s) 382, 390
AcvI CACGTG 1 cut(s) 230
AcyI GRCGYC 1 cut(s) 59
AfaI GTAC 1 cut(s) 263
AflIII ACRYGT 3 cut(s) 72, 227, 229
AgsI TTSAA 4 cut(s) 94, 516, 725, 832
AjiI CACGTC 2 cut(s) 73, 182
AjnI CCWGG 1 cut(s) 1066
AjuI GAANNNNNNNTTGG 2 cut(s) 868, 900
AleI CACNNNNGTG 1 cut(s) 230
Alw21I GWGCWC 1 cut(s) 1090
Alw26I GTCTC 3 cut(s) 140, 163, 278
AlwI GGATC 2 cut(s) 382, 390
AoxI GGCC 3 cut(s) 292, 340, 485
Asp700I GAANNNNTTC 2 cut(s) 332, 686
AspS9I GGNCC 2 cut(s) 485, 620
AsuC2I CCSGG 3 cut(s) 259, 412, 484
AsuHPI GGTGA 7 cut(s) 54, 168, 361, 472, 544, 634, 682
AsuNHI GCTAGC 1 cut(s) 140
AvaII GGWCC 1 cut(s) 620
BaeI ACNNNNGTAYC 2 cut(s) 253, 286
BbrPI CACGTG 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 1090
BccI CCATC 6 cut(s) 73, 358, 365, 569, 632, 1099
BceAI ACGGC 2 cut(s) 355, 974
BcgI CGANNNNNNTGC 2 cut(s) 152, 186
BciT130I CCWGG 1 cut(s) 1068
BciVI GTATCC 1 cut(s) 882
BcnI CCSGG 3 cut(s) 259, 412, 484
BcoDI GTCTC 3 cut(s) 140, 163, 278
BfaI CTAG 3 cut(s) 141, 746, 824
BfmI CTRYAG 2 cut(s) 816, 1055
BfuI GTATCC 1 cut(s) 882
BisI GCNGC 3 cut(s) 202, 488, 867
BlsI GCNGC 3 cut(s) 203, 489, 868
Bme1390I CCNGG 4 cut(s) 259, 412, 484, 1068
Bme18I GGWCC 1 cut(s) 620
BmgBI CACGTC 2 cut(s) 73, 182
BmgT120I GGNCC 2 cut(s) 485, 620
BmiI GGNNCC 2 cut(s) 559, 622
BmrFI CCNGG 4 cut(s) 259, 412, 484, 1068
BmsI GCATC 2 cut(s) 213, 777
BmtI GCTAGC 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 362
BpuMI CCSGG 3 cut(s) 259, 412, 484
Bsa29I ATCGAT 1 cut(s) 588
BsaAI YACGTR 1 cut(s) 230
BsaHI GRCGYC 1 cut(s) 59
BsaJI CCNNGG 2 cut(s) 125, 1067
BsaWI WCCGGW 2 cut(s) 554, 692
BseBI CCWGG 1 cut(s) 1068
BseCI ATCGAT 1 cut(s) 588
BseDI CCNNGG 2 cut(s) 125, 1067
BseGI GGATG 4 cut(s) 65, 350, 561, 1067
BseMII CTCAG 3 cut(s) 441, 668, 669
BseRI GAGGAG 6 cut(s) 14, 17, 20, 23, 31, 352
BseYI CCCAGC 2 cut(s) 144, 253
Bsh1236I CGCG 1 cut(s) 866
BshFI GGCC 3 cut(s) 294, 342, 487
BshVI ATCGAT 1 cut(s) 588
BsiHKAI GWGCWC 1 cut(s) 1090
BsiSI CCGG 9 cut(s) 258, 291, 411, 483, 555, 693, 795, 854, 998
BslFI GGGAC 1 cut(s) 161
BsmAI GTCTC 3 cut(s) 140, 163, 278
BsmBI CGTCTC 1 cut(s) 278
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 3 cut(s) 294, 342, 487
Bsp1286I GDGCHC 1 cut(s) 1090
Bsp143I GATC 5 cut(s) 316, 387, 395, 532, 742
BspACI CCGC 3 cut(s) 201, 488, 866
BspANI GGCC 3 cut(s) 294, 342, 487
BspCNI CTCAG 3 cut(s) 440, 667, 670
BspDI ATCGAT 1 cut(s) 588
BspFNI CGCG 1 cut(s) 866
BspLI GGNNCC 2 cut(s) 559, 622
BspOI GCTAGC 1 cut(s) 144
BspPI GGATC 2 cut(s) 382, 390
BssECI CCNNGG 2 cut(s) 125, 1067
BssMI GATC 5 cut(s) 316, 387, 395, 532, 742
BssNI GRCGYC 1 cut(s) 59
Bst2UI CCWGG 1 cut(s) 1068
Bst4CI ACNGT 5 cut(s) 103, 126, 157, 917, 927
Bst6I CTCTTC 1 cut(s) 41
BstACI GRCGYC 1 cut(s) 59
BstAPI GCANNNNNTGC 1 cut(s) 210
BstBAI YACGTR 1 cut(s) 230
BstC8I GCNNGC 2 cut(s) 142, 1122
BstDEI CTNAG 7 cut(s) 427, 536, 654, 678, 967, 1077, 1146
BstDSI CCRYGG 1 cut(s) 125
BstF5I GGATG 4 cut(s) 65, 350, 561, 1067
BstFNI CGCG 1 cut(s) 866
BstKTI GATC 5 cut(s) 319, 390, 398, 535, 745
BstMAI GTCTC 3 cut(s) 140, 163, 278
BstMBI GATC 5 cut(s) 316, 387, 395, 532, 742
BstMWI GCNNNNNNNGC 6 cut(s) 86, 95, 210, 310, 602, 863
BstNI CCWGG 1 cut(s) 1068
BstSCI CCNGG 4 cut(s) 257, 410, 482, 1066
BstSFI CTRYAG 2 cut(s) 816, 1055
BstUI CGCG 1 cut(s) 866
Bsu15I ATCGAT 1 cut(s) 588
BsuI GTATCC 1 cut(s) 882
BsuRI GGCC 3 cut(s) 294, 342, 487
BsuTUI ATCGAT 1 cut(s) 588
BtgI CCRYGG 1 cut(s) 125
BtgZI GCGATG 1 cut(s) 1077
BtrI CACGTC 2 cut(s) 73, 182
BtsCI GGATG 4 cut(s) 65, 350, 561, 1067
Cac8I GCNNGC 2 cut(s) 142, 1122
Cfr13I GGNCC 2 cut(s) 485, 620
ClaI ATCGAT 1 cut(s) 588
CseI GACGC 1 cut(s) 1028
Csp6I GTAC 1 cut(s) 262
CviAII CATG 1 cut(s) 168
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 7 cut(s) 427, 536, 654, 678, 967, 1077, 1146
DpnI GATC 5 cut(s) 318, 389, 397, 534, 744
DpnII GATC 5 cut(s) 316, 387, 395, 532, 742
DraI TTTAAA 2 cut(s) 84, 600
DrdI GACNNNNNNGTC 1 cut(s) 155
DseDI GACNNNNNNGTC 1 cut(s) 155
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 620
Eco72I CACGTG 1 cut(s) 230
EcoO109I RGGNCCY 1 cut(s) 620
EcoRII CCWGG 1 cut(s) 1066
Esp3I CGTCTC 1 cut(s) 278
FaeI CATG 1 cut(s) 171
FaiI YATR 5 cut(s) 169, 464, 896, 923, 1128
FalI AAGNNNNNCTT 2 cut(s) 868, 900
FaqI GGGAC 1 cut(s) 161
FatI CATG 1 cut(s) 167
FblI GTMKAC 1 cut(s) 1054
Fnu4HI GCNGC 3 cut(s) 202, 488, 867
FokI GGATG 4 cut(s) 52, 337, 548, 1074
Fsp4HI GCNGC 3 cut(s) 202, 488, 867
FspBI CTAG 3 cut(s) 141, 746, 824
GluI GCNGC 3 cut(s) 202, 488, 867
GsaI CCCAGC 2 cut(s) 148, 257
HaeIII GGCC 3 cut(s) 294, 342, 487
HapII CCGG 9 cut(s) 258, 291, 411, 483, 555, 693, 795, 854, 998
HgaI GACGC 1 cut(s) 1028
Hin1I GRCGYC 1 cut(s) 59
Hin1II CATG 1 cut(s) 171
HincII GTYRAC 1 cut(s) 651
HindII GTYRAC 1 cut(s) 651
HindIII AAGCTT 3 cut(s) 87, 569, 1122
HinfI GANTC 9 cut(s) 50, 221, 425, 438, 452, 635, 647, 725, 828
HpaII CCGG 9 cut(s) 258, 291, 411, 483, 555, 693, 795, 854, 998
HphI GGTGA 7 cut(s) 54, 168, 361, 472, 544, 634, 682
Hpy166II GTNNAC 3 cut(s) 264, 651, 1055
Hpy188III TCNNGA 4 cut(s) 248, 379, 618, 982
Hpy8I GTNNAC 3 cut(s) 264, 651, 1055
Hpy99I CGWCG 4 cut(s) 74, 186, 671, 931
HpyAV CCTTC 1 cut(s) 20
HpyCH4III ACNGT 5 cut(s) 103, 126, 157, 917, 927
HpyCH4IV ACGT 5 cut(s) 59, 72, 181, 229, 906
HpyF10VI GCNNNNNNNGC 6 cut(s) 86, 95, 210, 310, 602, 863
HpyF3I CTNAG 7 cut(s) 427, 536, 654, 678, 967, 1077, 1146
HpySE526I ACGT 5 cut(s) 59, 72, 181, 229, 906
Hsp92I GRCGYC 1 cut(s) 59
Hsp92II CATG 1 cut(s) 171
Kzo9I GATC 5 cut(s) 316, 387, 395, 532, 742
LmnI GCTCC 5 cut(s) 557, 704, 856, 942, 1093
LweI GCATC 2 cut(s) 213, 777
MaeI CTAG 3 cut(s) 141, 746, 824
MaeII ACGT 5 cut(s) 59, 72, 181, 229, 906
MaeIII GTNAC 3 cut(s) 60, 232, 430
MalI GATC 5 cut(s) 318, 389, 397, 534, 744
MboI GATC 5 cut(s) 316, 387, 395, 532, 742
MboII GAAGA 6 cut(s) 5, 8, 11, 28, 706, 876
MhlI GDGCHC 1 cut(s) 1090
MluCI AATT 1 cut(s) 1048
MlyI GAGTC 6 cut(s) 44, 215, 419, 432, 629, 656
MmeI TCCRAC 6 cut(s) 93, 186, 423, 547, 757, 909
MroXI GAANNNNTTC 2 cut(s) 332, 686
MseI TTAA 3 cut(s) 83, 599, 953
MslI CAYNNNNRTG 1 cut(s) 230
MspI CCGG 9 cut(s) 258, 291, 411, 483, 555, 693, 795, 854, 998
MspR9I CCNGG 4 cut(s) 259, 412, 484, 1068
MvaI CCWGG 1 cut(s) 1068
MvnI CGCG 1 cut(s) 866
MwoI GCNNNNNNNGC 6 cut(s) 86, 95, 210, 310, 602, 863
NciI CCSGG 3 cut(s) 259, 412, 484
NdeII GATC 5 cut(s) 316, 387, 395, 532, 742
NheI GCTAGC 1 cut(s) 140
NlaIII CATG 1 cut(s) 171
NlaIV GGNNCC 2 cut(s) 559, 622
NmeAIII GCCGAG 1 cut(s) 349
NmuCI GTSAC 2 cut(s) 60, 232
OliI CACNNNNGTG 1 cut(s) 230
PcsI WCGNNNNNNNCGW 2 cut(s) 321, 666
PdmI GAANNNNTTC 2 cut(s) 332, 686
PfeI GAWTC 3 cut(s) 452, 725, 828
PkrI GCNGC 3 cut(s) 203, 489, 868
PleI GAGTC 6 cut(s) 44, 215, 419, 432, 629, 655
PmaCI CACGTG 1 cut(s) 230
PmlI CACGTG 1 cut(s) 230
PpsI GAGTC 6 cut(s) 44, 215, 419, 432, 629, 655
Ppu21I YACGTR 1 cut(s) 230
PpuMI RGGWCCY 1 cut(s) 620
Psp5II RGGWCCY 1 cut(s) 620
Psp6I CCWGG 1 cut(s) 1066
PspCI CACGTG 1 cut(s) 230
PspFI CCCAGC 2 cut(s) 144, 253
PspGI CCWGG 1 cut(s) 1066
PspN4I GGNNCC 2 cut(s) 559, 622
PspPI GGNCC 2 cut(s) 485, 620
PspPPI RGGWCCY 1 cut(s) 620
PsrI GAACNNNNNNTAC 2 cut(s) 320, 352
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
RseI CAYNNNNRTG 1 cut(s) 230
SaqAI TTAA 3 cut(s) 83, 599, 953
SatI GCNGC 3 cut(s) 202, 488, 867
Sau3AI GATC 5 cut(s) 316, 387, 395, 532, 742
Sau96I GGNCC 2 cut(s) 485, 620
SchI GAGTC 6 cut(s) 44, 215, 419, 432, 629, 656
ScrFI CCNGG 4 cut(s) 259, 412, 484, 1068
SduI GDGCHC 1 cut(s) 1090
SfaNI GCATC 2 cut(s) 213, 777
SfcI CTRYAG 2 cut(s) 816, 1055
SinI GGWCC 1 cut(s) 620
SmiMI CAYNNNNRTG 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
Sse9I AATT 1 cut(s) 1048
SsiI CCGC 3 cut(s) 201, 488, 866
SspMI CTAG 3 cut(s) 141, 746, 824
StyD4I CCNGG 4 cut(s) 257, 410, 482, 1066
TaaI ACNGT 5 cut(s) 103, 126, 157, 917, 927
TaiI ACGT 5 cut(s) 62, 75, 184, 232, 909
TasI AATT 1 cut(s) 1048
TauI GCSGC 3 cut(s) 204, 490, 869
TfiI GAWTC 3 cut(s) 452, 725, 828
Tru1I TTAA 3 cut(s) 83, 599, 953
Tru9I TTAA 3 cut(s) 83, 599, 953
TseFI GTSAC 2 cut(s) 60, 232
Tsp45I GTSAC 2 cut(s) 60, 232
TspDTI ATGAA 1 cut(s) 518
TspGWI ACGGA 1 cut(s) 955
VpaK11BI GGWCC 1 cut(s) 620
XmiI GTMKAC 1 cut(s) 1054
XmnI GAANNNNTTC 2 cut(s) 332, 686
XspI CTAG 3 cut(s) 141, 746, 824
ZraI GACGTC 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.