FvH4_2g05350

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
4405162 .. 4406328
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g05350.t1

Sequence Viewer

Length: 1167 bp
ATGTCTCACCTTAACTTCCTCCTCCTCCTTCAGTTTTCTCTGTTCTTCATCAACCATGTCCAAGCCCTCACTTCCCCTTCAGACATCTCAGCTCTCAAGGCCTTCAAAGCCTCAATCAAACCCTCCTCCATTCCCTCCTGGTCTTGCCTAGCCTCATGGGACTTCACCTCCGACCCATGCACCCTCCCCCACCGAATCCACTTCACCTGCGGCGTCACCTGCTCACCGGACTCCACCCGTGTCACCCAGATCACTCTCGACCCCGCCGGCTACTCCGGCACCCTCACCCCTCAAATTTCTCAGCTCACCCATCTATCCACTCTCGACCTCTCCGAAAACTCCTTCTTCGGCCCAATCCCATCCTCCATTTCCTCCCTCTCTTACCTCCAAATCCTGACCCTCCGATCCAACTCCTTCTCCGGCTCTCTCACTCCCTCCATCACCAAGCTCAAGTCTTTAGAATCTCTAGACATTTCCCACAATTTCCTAACAGGGTTCCTCCCAAACTCCATGGCTTCTTTATCCAACTTAAGAAGACTCGATCTCAGCTTCAACAAGATCACCGGATCACTCCCCAGACTCCCACCAAAGCTCTTAGAACTCGCTCTCAAAAGCAACTCGCTATCCGGGCCCTTGTCGAAATCGTCCTTCGACGGATTGTCTCAGCTGGAGGTGGTCGAGCTCAGCCAGAACTCGTTCTCCGGTACATTACAGTCATGGTTCTTCCTCATCCCTTCCCTCCAACAAGTCGACCTAGCCAATAACAGCCTGACAGGTGTCGACATCGCCAGGCCTGGCTCCGGCAGAGGCGGCGAGCTCGTGGCGGTCGACTTAAGCTTCAACAGAATCGAAGGCTACGCGCCCGCGAACTTCGCGGCATTTCCGAGGCTGTCGTCGCTGTCGGTTCGTTACAACAGGCTACGTGGCAAGATCCCAGTAGAGTACGGGAAGAACAAGTCGTTGAAGCGGTTGTACTTAGATGGTAACTTTCTGAACGGGCAACCACCGCCGGCGTTGTTAACCGGAAGTTCGGGAATCTCCGGCAGCTTGGGGGATAATTGTCTACAGGGGTGTCCATCTTCAGCGAAGCTGTGCCTTCCGTCGCAGAAATCAAACGCGATATGCAAGCAGGCCTATGGTGGAGGAAGAGGAAGACCGAGGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

389

Amino Acids

41.73

Weight (kDa)

9.37

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 94 - 303 3.1e-11 Leucine-rich repeat region
LRR_8 PF13855 128 - 187 1.6e-09 Leucine rich repeat
LRR_4 PF12799 151 - 188 8e-06 Leucine Rich repeats (2 copies)
LRR_8 PF13855 196 - 257 1.5e-07 Leucine rich repeat
LRR_8 PF13855 273 - 329 3.3e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014453)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 215, 227
Acc36I ACCTGC 2 cut(s) 215, 227
AccB1I GGYRCC 1 cut(s) 278
AccI GTMKAC 4 cut(s) 750, 780, 828, 1063
AccII CGCG 4 cut(s) 860, 866, 875, 1118
AciI CCGC 8 cut(s) 210, 264, 810, 824, 864, 875, 967, 1007
AclWI GGATC 3 cut(s) 399, 574, 925
AcsI RAATTY 1 cut(s) 294
AcuI CTGAAG 3 cut(s) 14, 63, 1065
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 3 cut(s) 706, 944, 974
AfiI CCNNNNNNNGG 1 cut(s) 800
AflII CTTAAG 2 cut(s) 529, 832
AgsI TTSAA 4 cut(s) 106, 553, 841, 964
AhdI GACNNNNNGTC 1 cut(s) 658
AjnI CCWGG 3 cut(s) 137, 788, 793
AloI GAACNNNNNNTCC 2 cut(s) 683, 715
Alw21I GWGCWC 2 cut(s) 684, 819
Alw26I GTCTC 2 cut(s) 9, 666
AlwI GGATC 3 cut(s) 399, 574, 925
AoxI GGCC 5 cut(s) 99, 349, 629, 791, 1131
ApaI GGGCCC 1 cut(s) 633
ApeKI GCWGC 1 cut(s) 1044
ApoI RAATTY 1 cut(s) 294
Asp700I GAANNNNTTC 1 cut(s) 695
AspLEI GCGC 1 cut(s) 862
AspS9I GGNCC 3 cut(s) 350, 629, 630
AsuC2I CCSGG 1 cut(s) 628
AsuHPI GGTGA 9 cut(s) 157, 196, 208, 216, 235, 277, 298, 433, 553
BaeGI GKGCMC 1 cut(s) 633
BanI GGYRCC 1 cut(s) 278
BanII GRGCYC 3 cut(s) 633, 684, 819
BarI GAAGNNNNNNTAC 2 cut(s) 956, 988
BauI CACGAG 1 cut(s) 818
BbsI GAAGAC 2 cut(s) 541, 1159
Bbv12I GWGCWC 2 cut(s) 684, 819
BbvI GCAGC 1 cut(s) 1056
BccI CCATC 5 cut(s) 318, 367, 446, 974, 1084
BciT130I CCWGG 3 cut(s) 139, 790, 795
BcnI CCSGG 1 cut(s) 628
BcoDI GTCTC 2 cut(s) 9, 666
BfaI CTAG 3 cut(s) 149, 467, 755
BfmI CTRYAG 1 cut(s) 1064
BfrI CTTAAG 2 cut(s) 529, 832
BfuAI ACCTGC 2 cut(s) 215, 227
BisI GCNGC 4 cut(s) 211, 811, 876, 1045
BlpI GCTNAGC 1 cut(s) 683
BlsI GCNGC 4 cut(s) 212, 812, 877, 1046
Bme1390I CCNGG 4 cut(s) 139, 628, 790, 795
BmeRI GACNNNNNGTC 1 cut(s) 658
BmgT120I GGNCC 3 cut(s) 350, 629, 630
BmiI GGNNCC 4 cut(s) 280, 497, 631, 799
BmrFI CCNGG 4 cut(s) 139, 628, 790, 795
BmrI ACTGGG 1 cut(s) 929
BmuI ACTGGG 1 cut(s) 929
BoxI GACNNNNGTC 2 cut(s) 776, 1159
BpiI GAAGAC 2 cut(s) 541, 1159
BpmI CTGGAG 1 cut(s) 689
Bpu1102I GCTNAGC 1 cut(s) 683
BpuEI CTTGAG 2 cut(s) 80, 434
BpuMI CCSGG 1 cut(s) 628
BsaAI YACGTR 1 cut(s) 923
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 3 cut(s) 510, 884, 1157
BsaWI WCCGGW 4 cut(s) 226, 563, 701, 1022
BsaXI ACNNNNNCTCC 6 cut(s) 152, 182, 401, 431, 683, 713
Bsc4I CCNNNNNNNGG 1 cut(s) 800
Bse118I RCCGGY 2 cut(s) 266, 1009
Bse1I ACTGG 1 cut(s) 935
BseBI CCWGG 3 cut(s) 139, 790, 795
BseDI CCNNGG 3 cut(s) 510, 884, 1157
BseGI GGATG 2 cut(s) 359, 729
BseLI CCNNNNNNNGG 1 cut(s) 800
BseMII CTCAG 5 cut(s) 102, 314, 559, 677, 697
BseNI ACTGG 1 cut(s) 935
BseRI GAGGAG 3 cut(s) 11, 14, 115
BseSI GKGCMC 1 cut(s) 633
BseXI GCAGC 1 cut(s) 1056
Bsh1236I CGCG 4 cut(s) 860, 866, 875, 1118
Bsh1285I CGRYCG 1 cut(s) 828
BshFI GGCC 5 cut(s) 101, 351, 631, 793, 1133
BshNI GGYRCC 1 cut(s) 278
BsiEI CGRYCG 1 cut(s) 828
BsiHKAI GWGCWC 2 cut(s) 684, 819
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 800
BsmAI GTCTC 2 cut(s) 9, 666
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 5 cut(s) 101, 351, 631, 793, 1133
Bsp120I GGGCCC 1 cut(s) 629
Bsp1286I GDGCHC 3 cut(s) 633, 684, 819
Bsp143I GATC 6 cut(s) 249, 404, 541, 558, 566, 930
Bsp1720I GCTNAGC 1 cut(s) 683
Bsp19I CCATGG 1 cut(s) 510
BspACI CCGC 8 cut(s) 210, 264, 810, 824, 864, 875, 967, 1007
BspANI GGCC 5 cut(s) 101, 351, 631, 793, 1133
BspCNI CTCAG 5 cut(s) 101, 313, 558, 676, 696
BspFNI CGCG 4 cut(s) 860, 866, 875, 1118
BspLI GGNNCC 4 cut(s) 280, 497, 631, 799
BspMI ACCTGC 2 cut(s) 215, 227
BspPI GGATC 3 cut(s) 399, 574, 925
BspT107I GGYRCC 1 cut(s) 278
BspTI CTTAAG 2 cut(s) 529, 832
BsrFI RCCGGY 2 cut(s) 266, 1009
BsrI ACTGG 1 cut(s) 935
BssAI RCCGGY 2 cut(s) 266, 1009
BssECI CCNNGG 3 cut(s) 510, 884, 1157
BssMI GATC 6 cut(s) 249, 404, 541, 558, 566, 930
BssNI GRCGYC 1 cut(s) 213
BssSI CACGAG 1 cut(s) 818
BssT1I CCWWGG 1 cut(s) 510
Bst2BI CACGAG 1 cut(s) 818
Bst2UI CCWGG 3 cut(s) 139, 790, 795
Bst4CI ACNGT 1 cut(s) 714
Bst6I CTCTTC 1 cut(s) 1141
BstACI GRCGYC 1 cut(s) 213
BstAFI CTTAAG 2 cut(s) 529, 832
BstBAI YACGTR 1 cut(s) 923
BstC8I GCNNGC 6 cut(s) 268, 815, 864, 1011, 1127, 1131
BstDEI CTNAG 7 cut(s) 88, 300, 545, 595, 663, 683, 976
BstDSI CCRYGG 1 cut(s) 510
BstF5I GGATG 2 cut(s) 359, 729
BstFNI CGCG 4 cut(s) 860, 866, 875, 1118
BstHHI GCGC 1 cut(s) 862
BstKTI GATC 6 cut(s) 252, 407, 544, 561, 569, 933
BstMAI GTCTC 2 cut(s) 9, 666
BstMBI GATC 6 cut(s) 249, 404, 541, 558, 566, 930
BstMCI CGRYCG 1 cut(s) 828
BstMWI GCNNNNNNNGC 9 cut(s) 98, 107, 219, 276, 628, 810, 872, 895, 1006
BstNI CCWGG 3 cut(s) 139, 790, 795
BstPAI GACNNNNGTC 2 cut(s) 776, 1159
BstSCI CCNGG 4 cut(s) 137, 626, 788, 793
BstSFI CTRYAG 1 cut(s) 1064
BstSLI GKGCMC 1 cut(s) 633
BstUI CGCG 4 cut(s) 860, 866, 875, 1118
BstV1I GCAGC 1 cut(s) 1056
BstV2I GAAGAC 2 cut(s) 541, 1159
BstX2I RGATCY 1 cut(s) 930
BstYI RGATCY 1 cut(s) 930
BsuRI GGCC 5 cut(s) 101, 351, 631, 793, 1133
BtgI CCRYGG 1 cut(s) 510
BtgZI GCGATG 1 cut(s) 769
BtsCI GGATG 2 cut(s) 359, 729
BveI ACCTGC 2 cut(s) 215, 227
Cac8I GCNNGC 6 cut(s) 268, 815, 864, 1011, 1127, 1131
CfoI GCGC 1 cut(s) 862
Cfr10I RCCGGY 2 cut(s) 266, 1009
Cfr13I GGNCC 3 cut(s) 350, 629, 630
CseI GACGC 1 cut(s) 202
Csp6I GTAC 3 cut(s) 705, 943, 973
CviAII CATG 5 cut(s) 56, 156, 177, 511, 717
CviQI GTAC 3 cut(s) 705, 943, 973
DdeI CTNAG 7 cut(s) 88, 300, 545, 595, 663, 683, 976
DpnI GATC 6 cut(s) 251, 406, 543, 560, 568, 932
DpnII GATC 6 cut(s) 249, 404, 541, 558, 566, 930
DriI GACNNNNNGTC 1 cut(s) 658
Eam1104I CTCTTC 1 cut(s) 1141
Eam1105I GACNNNNNGTC 1 cut(s) 658
EarI CTCTTC 1 cut(s) 1141
Ecl136II GAGCTC 2 cut(s) 682, 817
Eco130I CCWWGG 1 cut(s) 510
Eco147I AGGCCT 3 cut(s) 101, 793, 1133
Eco24I GRGCYC 3 cut(s) 633, 684, 819
Eco53kI GAGCTC 2 cut(s) 682, 817
Eco57I CTGAAG 3 cut(s) 14, 63, 1065
EcoICRI GAGCTC 2 cut(s) 682, 817
EcoO109I RGGNCCY 1 cut(s) 630
EcoRII CCWGG 3 cut(s) 137, 788, 793
EcoT14I CCWWGG 1 cut(s) 510
EcoT38I GRGCYC 3 cut(s) 633, 684, 819
ErhI CCWWGG 1 cut(s) 510
FaeI CATG 5 cut(s) 59, 159, 180, 514, 720
FaiI YATR 7 cut(s) 57, 157, 178, 512, 718, 1123, 1137
FaqI GGGAC 1 cut(s) 173
FatI CATG 5 cut(s) 55, 155, 176, 510, 716
FauI CCCGC 2 cut(s) 271, 871
FblI GTMKAC 4 cut(s) 750, 780, 828, 1063
Fnu4HI GCNGC 4 cut(s) 211, 811, 876, 1045
FokI GGATG 2 cut(s) 346, 716
FriOI GRGCYC 3 cut(s) 633, 684, 819
Fsp4HI GCNGC 4 cut(s) 211, 811, 876, 1045
FspBI CTAG 3 cut(s) 149, 467, 755
GlaI GCGC 1 cut(s) 861
GluI GCNGC 4 cut(s) 211, 811, 876, 1045
GsuI CTGGAG 1 cut(s) 689
HaeIII GGCC 5 cut(s) 101, 351, 631, 793, 1133
HgaI GACGC 1 cut(s) 202
HhaI GCGC 1 cut(s) 862
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 5 cut(s) 59, 159, 180, 514, 720
Hin6I GCGC 1 cut(s) 860
HinP1I GCGC 1 cut(s) 860
HincII GTYRAC 4 cut(s) 751, 781, 829, 1020
HindII GTYRAC 4 cut(s) 751, 781, 829, 1020
HindIII AAGCTT 1 cut(s) 835
HinfI GANTC 7 cut(s) 195, 230, 461, 537, 579, 846, 1035
HpaI GTTAAC 1 cut(s) 1020
HphI GGTGA 9 cut(s) 157, 196, 208, 216, 235, 277, 298, 433, 553
Hpy166II GTNNAC 5 cut(s) 751, 781, 829, 1020, 1064
Hpy188I TCNGA 6 cut(s) 82, 172, 334, 404, 885, 993
Hpy188III TCNNGA 6 cut(s) 257, 323, 394, 467, 1032, 1164
Hpy8I GTNNAC 5 cut(s) 751, 781, 829, 1020, 1064
Hpy99I CGWCG 3 cut(s) 656, 898, 1105
HpyAV CCTTC 9 cut(s) 38, 87, 112, 352, 424, 658, 744, 845, 1106
HpyCH4III ACNGT 1 cut(s) 714
HpyCH4IV ACGT 1 cut(s) 922
HpyCH4V TGCA 2 cut(s) 180, 1125
HpyF10VI GCNNNNNNNGC 9 cut(s) 98, 107, 219, 276, 628, 810, 872, 895, 1006
HpyF3I CTNAG 7 cut(s) 88, 300, 545, 595, 663, 683, 976
HpySE526I ACGT 1 cut(s) 922
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 5 cut(s) 59, 159, 180, 514, 720
HspAI GCGC 1 cut(s) 860
KroI GCCGGC 2 cut(s) 266, 1009
KroNI GCCGGC 2 cut(s) 268, 1011
KspAI GTTAAC 1 cut(s) 1020
Kzo9I GATC 6 cut(s) 249, 404, 541, 558, 566, 930
LmnI GCTCC 1 cut(s) 803
Lsp1109I GCAGC 1 cut(s) 1056
MaeI CTAG 3 cut(s) 149, 467, 755
MaeII ACGT 1 cut(s) 922
MaeIII GTNAC 4 cut(s) 214, 241, 908, 983
MalI GATC 6 cut(s) 251, 406, 543, 560, 568, 932
MboI GATC 6 cut(s) 249, 404, 541, 558, 566, 930
MboII GAAGA 8 cut(s) 37, 337, 546, 715, 961, 1071, 1158, 1164
MflI RGATCY 1 cut(s) 930
MhlI GDGCHC 3 cut(s) 633, 684, 819
MluCI AATT 3 cut(s) 294, 481, 1057
MlyI GAGTC 3 cut(s) 224, 531, 573
MmeI TCCRAC 4 cut(s) 195, 432, 549, 766
MreI CGCCGGCG 1 cut(s) 1009
MroNI GCCGGC 2 cut(s) 266, 1009
MroXI GAANNNNTTC 1 cut(s) 695
MseI TTAA 4 cut(s) 12, 530, 833, 1019
MspA1I CMGCKG 1 cut(s) 667
MspCI CTTAAG 2 cut(s) 529, 832
MspR9I CCNGG 4 cut(s) 139, 628, 790, 795
MvaI CCWGG 3 cut(s) 139, 790, 795
MvnI CGCG 4 cut(s) 860, 866, 875, 1118
MwoI GCNNNNNNNGC 9 cut(s) 98, 107, 219, 276, 628, 810, 872, 895, 1006
NaeI GCCGGC 2 cut(s) 268, 1011
NciI CCSGG 1 cut(s) 628
NcoI CCATGG 1 cut(s) 510
NdeII GATC 6 cut(s) 249, 404, 541, 558, 566, 930
NgoMIV GCCGGC 2 cut(s) 266, 1009
NlaIII CATG 5 cut(s) 59, 159, 180, 514, 720
NlaIV GGNNCC 4 cut(s) 280, 497, 631, 799
NmuCI GTSAC 2 cut(s) 214, 241
PaqCI CACCTGC 2 cut(s) 215, 227
PceI AGGCCT 3 cut(s) 101, 793, 1133
PcsI WCGNNNNNNNCGW 2 cut(s) 330, 825
PdiI GCCGGC 2 cut(s) 268, 1011
PdmI GAANNNNTTC 1 cut(s) 695
PfeI GAWTC 4 cut(s) 195, 461, 846, 1035
PkrI GCNGC 4 cut(s) 212, 812, 877, 1046
PleI GAGTC 3 cut(s) 224, 531, 573
PpsI GAGTC 3 cut(s) 224, 531, 573
Ppu21I YACGTR 1 cut(s) 923
PshAI GACNNNNGTC 2 cut(s) 776, 1159
Psp124BI GAGCTC 2 cut(s) 684, 819
Psp6I CCWGG 3 cut(s) 137, 788, 793
PspGI CCWGG 3 cut(s) 137, 788, 793
PspN4I GGNNCC 4 cut(s) 280, 497, 631, 799
PspOMI GGGCCC 1 cut(s) 629
PspPI GGNCC 3 cut(s) 350, 629, 630
PsuI RGATCY 1 cut(s) 930
PvuII CAGCTG 1 cut(s) 667
RsaI GTAC 3 cut(s) 706, 944, 974
RsaNI GTAC 3 cut(s) 705, 943, 973
SacI GAGCTC 2 cut(s) 684, 819
SalI GTCGAC 3 cut(s) 749, 779, 827
SaqAI TTAA 4 cut(s) 12, 530, 833, 1019
SatI GCNGC 4 cut(s) 211, 811, 876, 1045
Sau3AI GATC 6 cut(s) 249, 404, 541, 558, 566, 930
Sau96I GGNCC 3 cut(s) 350, 629, 630
SchI GAGTC 3 cut(s) 224, 531, 573
ScrFI CCNGG 4 cut(s) 139, 628, 790, 795
SduI GDGCHC 3 cut(s) 633, 684, 819
SfcI CTRYAG 1 cut(s) 1064
SgrAI CRCCGGYG 1 cut(s) 1009
SmlI CTYRAG 4 cut(s) 95, 449, 529, 832
SmoI CTYRAG 4 cut(s) 95, 449, 529, 832
Sse9I AATT 3 cut(s) 294, 481, 1057
SseBI AGGCCT 3 cut(s) 101, 793, 1133
SsiI CCGC 8 cut(s) 210, 264, 810, 824, 864, 875, 967, 1007
SspMI CTAG 3 cut(s) 149, 467, 755
SstI GAGCTC 2 cut(s) 684, 819
StuI AGGCCT 3 cut(s) 101, 793, 1133
StyD4I CCNGG 4 cut(s) 137, 626, 788, 793
StyI CCWWGG 1 cut(s) 510
TaaI ACNGT 1 cut(s) 714
TaiI ACGT 1 cut(s) 925
TasI AATT 3 cut(s) 294, 481, 1057
TatI WGTACW 1 cut(s) 972
TauI GCSGC 3 cut(s) 213, 813, 878
TfiI GAWTC 4 cut(s) 195, 461, 846, 1035
Tru1I TTAA 4 cut(s) 12, 530, 833, 1019
Tru9I TTAA 4 cut(s) 12, 530, 833, 1019
TseFI GTSAC 2 cut(s) 214, 241
TseI GCWGC 1 cut(s) 1044
Tsp45I GTSAC 2 cut(s) 214, 241
TspDTI ATGAA 1 cut(s) 37
TspGWI ACGGA 2 cut(s) 669, 1089
Vha464I CTTAAG 2 cut(s) 529, 832
XapI RAATTY 1 cut(s) 294
XbaI TCTAGA 1 cut(s) 466
XmiI GTMKAC 4 cut(s) 750, 780, 828, 1063
XmnI GAANNNNTTC 1 cut(s) 695
XspI CTAG 3 cut(s) 149, 467, 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.