pycom05g08720

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0014453
Physical Location & Seq
Forward (+)
11484535 .. 11485773
1239 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g08720.1

Sequence Viewer

Length: 1239 bp
ATGCTCGAAAGTCACTCATTCACTCCTTCAAGCACAAACCACCAAGTAGCTATGCCTCTGCCTAACCTCAACCTCCCCCACCGCCTCCTCCTCCTCCTTCACATTTCCCTCCTAATCTCCACCAATCACATTTCTCCAATCCAAGCCCTCACTTCCCCTTCAGACATCTCCGCCCTCAAGGCATTCAAATCCGCCGTCAAACCCTCCTCCATTCCGCCGTGGTCTTGCCTCGCCTCCTGGGACTTCACCACCGACCCTTGCGCCATCCCCCGCCGAACCCACTTCACGTGCGGCGTCACCTGCTCACCCGACTCGACCCGGGTCACCCAAATCACCCTTGACCCCGCCGCCTACTCCGGGACGCTCACCCCGCTAATTTCTCAGCTCACCAACCTCACCACTCTCGACCTCGCCGATAACACCTTCTCCGGCGCCATCCCATCCTCCATTTCCTCTCTCTCCAACCTCCAAACCTTAACTCTGCAATCCAACTCGTTCTCCGGCTCGCTCCCTCCCGCCATTTCCAACCTTAAATCCCTCGAATCCTTAGACATTTCCCACAATTTACTATCTGGGTTTCTCCCAAACACATTGAACTCGCTACCCAATTTACGACGGCTCGATCTGAGCTTCAACAAGCTTGTCGGCACAATCCCCAAACTGCCCCCGAACCTCCTTGAACTCGCTCTGAAGCACAATTCGTTATCCGGGTCGATTCCGGAATCGGCCTTCGCCGGCTTGACTCAGTTGGAAGTGATAGAACTCAGCGAGAACTCGTTTTCCGGGGCTCTACAGTCGTGGTTCTTTCTCCTCCCGTCGCTCCAGCAAGTAGATTTGGCCAATAACAGCCTGACAGGTGTCGAGATCCCGCCCAATGGCGGTGGCGATCTCGTGGCCCTTGATTTGGGTTCTAACAGAATCGAAGGTTACGTGCCGGTAAATTTCGGGAGCTATCCTATGCTGTCGTCGCTGTCACTTCGGTACAACCGGCTACGTGGCAGGATCCCAGTGGAGTACGGGCGGAAAAAGTCGTTAAAGAGGTTGTACTTGGACGGGAACTTTTTGATTGGGCAGCCGCCGGCGGGACTGGTGACCGGAGGTAATGGAGTGTCCGGAAGCTTGGGGGATAATTGTCTGCAGGCGTGCCCAGCGTCTTCGAATCTGTGCATACCTCCGCAGAAACCTAACGCCATTTGCAAGCAAGCGTATGGTGGTGGGAGAGGAAAACCGAGGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

413

Amino Acids

43.9

Weight (kDa)

8.6

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 122 - 289 3.8e-11 Leucine-rich repeat region
LRR_8 PF13855 173 - 214 1.4e-07 Leucine rich repeat
LRR_4 PF12799 178 - 222 1.5e-06 Leucine Rich repeats (2 copies)
LRR_8 PF13855 223 - 284 6.4e-10 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15320
fragaria_vesca FvH4_2g05350
malus_domestica MD05G1087700.v1.1
prunus_persica Prupe.8G133500_v2.0.a1
pyrus_communis pycom05g08720
rosa_chinensis RchiOBHm_Chr6g0255611
rosa_laevigata RLG00000014827
rosa_multiflora Rmu_co8324351.1_g000001 Rmu_sc0010421.1_g000006 Rmu_sc0015454.1_g000005
rosa_roxburghii Rroxscaffold_7G00209850
rosa_rugosa Rorug05G0559700
rosa_samantha Rh6AG078300 Rh6BG070600 Rh6CG069200 Rh6DG066200
rosa_wichuraiana Rw6G006600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 308
Acc36I ACCTGC 1 cut(s) 308
AccB1I GGYRCC 1 cut(s) 431
AccIII TCCGGA 2 cut(s) 718, 1112
AclWI GGATC 3 cut(s) 859, 997, 1010
AcoI YGGCCR 1 cut(s) 837
AcsI RAATTY 1 cut(s) 940
AcuI CTGAAG 2 cut(s) 144, 710
AcvI CACGTG 1 cut(s) 288
AcyI GRCGYC 2 cut(s) 294, 432
AfaI GTAC 3 cut(s) 983, 1016, 1046
AfiI CCNNNNNNNGG 5 cut(s) 357, 875, 878, 904, 1082
AgsI TTSAA 5 cut(s) 30, 187, 595, 634, 680
AjnI CCWGG 1 cut(s) 236
AloI GAACNNNNNNTCC 2 cut(s) 764, 796
AluBI AGCT 6 cut(s) 50, 385, 630, 640, 951, 1119
AluI AGCT 6 cut(s) 50, 385, 630, 640, 951, 1119
AlwI GGATC 3 cut(s) 859, 997, 1010
Ama87I CYCGRG 1 cut(s) 318
Aor13HI TCCGGA 2 cut(s) 718, 1112
AoxI GGCC 3 cut(s) 726, 837, 894
ApeKI GCWGC 1 cut(s) 1072
ApoI RAATTY 1 cut(s) 940
ArsI GACNNNNNNTTYG 2 cut(s) 180, 212
AspLEI GCGC 2 cut(s) 263, 434
AspS9I GGNCC 1 cut(s) 895
AsuC2I CCSGG 5 cut(s) 319, 320, 358, 709, 784
AsuHPI GGTGA 9 cut(s) 238, 289, 297, 316, 325, 358, 379, 388, 1102
AsuII TTCGAA 1 cut(s) 1157
AvaI CYCGRG 1 cut(s) 318
BaeGI GKGCMC 1 cut(s) 1148
BalI TGGCCA 1 cut(s) 839
BamHI GGATCC 1 cut(s) 1002
BanI GGYRCC 1 cut(s) 431
BanII GRGCYC 1 cut(s) 790
BauI CACGAG 1 cut(s) 890
BbrPI CACGTG 1 cut(s) 288
BbsI GAAGAC 1 cut(s) 1146
BbvI GCAGC 1 cut(s) 1084
BccI CCATC 3 cut(s) 272, 443, 448
BceAI ACGGC 3 cut(s) 179, 202, 632
BciT130I CCWGG 1 cut(s) 238
BcnI CCSGG 5 cut(s) 319, 320, 358, 709, 784
BfmI CTRYAG 2 cut(s) 791, 1136
BfoI RGCGCY 1 cut(s) 435
BfuAI ACCTGC 1 cut(s) 308
BglI GCCNNNNNGGC 1 cut(s) 179
BisI GCNGC 4 cut(s) 292, 348, 1073, 1076
BlsI GCNGC 4 cut(s) 293, 349, 1074, 1077
Bme1390I CCNGG 6 cut(s) 238, 319, 320, 358, 709, 784
BmeT110I CYCGRG 1 cut(s) 318
BmgT120I GGNCC 1 cut(s) 895
BmiI GGNNCC 2 cut(s) 433, 1004
BmrFI CCNGG 6 cut(s) 238, 319, 320, 358, 709, 784
BmrI ACTGGG 1 cut(s) 1001
BmuI ACTGGG 1 cut(s) 1001
BoxI GACNNNNGTC 2 cut(s) 320, 857
BpiI GAAGAC 1 cut(s) 1146
BpmI CTGGAG 1 cut(s) 806
Bpu14I TTCGAA 1 cut(s) 1157
BpuEI CTTGAG 1 cut(s) 161
BpuMI CCSGG 5 cut(s) 319, 320, 358, 709, 784
BsaAI YACGTR 3 cut(s) 288, 931, 995
BsaHI GRCGYC 2 cut(s) 294, 432
BsaJI CCNNGG 5 cut(s) 218, 237, 318, 783, 1229
BsaWI WCCGGW 3 cut(s) 718, 1094, 1112
BsaXI ACNNNNNCTCC 4 cut(s) 410, 440, 482, 512
Bsc4I CCNNNNNNNGG 5 cut(s) 357, 875, 878, 904, 1082
Bse118I RCCGGY 4 cut(s) 734, 934, 987, 1078
Bse1I ACTGG 2 cut(s) 1007, 1092
BseAI TCCGGA 2 cut(s) 718, 1112
BseBI CCWGG 1 cut(s) 238
BseDI CCNNGG 5 cut(s) 218, 237, 318, 783, 1229
BseGI GGATG 3 cut(s) 264, 435, 440
BseLI CCNNNNNNNGG 5 cut(s) 357, 875, 878, 904, 1082
BseMII CTCAG 4 cut(s) 395, 617, 758, 778
BseNI ACTGG 2 cut(s) 1007, 1092
BseRI GAGGAG 5 cut(s) 77, 80, 83, 196, 800
BseSI GKGCMC 1 cut(s) 1148
BseXI GCAGC 1 cut(s) 1084
BseYI CCCAGC 1 cut(s) 1147
BshFI GGCC 3 cut(s) 728, 839, 896
BshNI GGYRCC 1 cut(s) 431
BsiHKCI CYCGRG 1 cut(s) 318
BslFI GGGAC 3 cut(s) 254, 373, 1098
BslI CCNNNNNNNGG 5 cut(s) 357, 875, 878, 904, 1082
BsmFI GGGAC 3 cut(s) 254, 373, 1098
BsmI GAATGC 1 cut(s) 182
BsnI GGCC 3 cut(s) 728, 839, 896
BsoBI CYCGRG 1 cut(s) 318
Bsp119I TTCGAA 1 cut(s) 1157
Bsp1286I GDGCHC 2 cut(s) 790, 1148
Bsp13I TCCGGA 2 cut(s) 718, 1112
Bsp143I GATC 4 cut(s) 622, 864, 886, 1002
BspANI GGCC 3 cut(s) 728, 839, 896
BspCNI CTCAG 4 cut(s) 394, 618, 757, 777
BspEI TCCGGA 2 cut(s) 718, 1112
BspLI GGNNCC 2 cut(s) 433, 1004
BspMAI CTGCAG 1 cut(s) 1140
BspMI ACCTGC 1 cut(s) 308
BspPI GGATC 3 cut(s) 859, 997, 1010
BspT104I TTCGAA 1 cut(s) 1157
BspT107I GGYRCC 1 cut(s) 431
BsrFI RCCGGY 4 cut(s) 734, 934, 987, 1078
BsrI ACTGG 2 cut(s) 1007, 1092
BssAI RCCGGY 4 cut(s) 734, 934, 987, 1078
BssECI CCNNGG 5 cut(s) 218, 237, 318, 783, 1229
BssMI GATC 4 cut(s) 622, 864, 886, 1002
BssNI GRCGYC 2 cut(s) 294, 432
BssSI CACGAG 1 cut(s) 890
Bst2BI CACGAG 1 cut(s) 890
Bst2UI CCWGG 1 cut(s) 238
Bst4CI ACNGT 1 cut(s) 795
BstACI GRCGYC 2 cut(s) 294, 432
BstBAI YACGTR 3 cut(s) 288, 931, 995
BstBI TTCGAA 1 cut(s) 1157
BstC8I GCNNGC 7 cut(s) 506, 736, 1080, 1140, 1144, 1199, 1203
BstDEI CTNAG 5 cut(s) 381, 547, 626, 744, 764
BstDSI CCRYGG 1 cut(s) 218
BstEII GGTNACC 2 cut(s) 322, 1090
BstF5I GGATG 3 cut(s) 264, 435, 440
BstH2I RGCGCY 1 cut(s) 435
BstHHI GCGC 2 cut(s) 263, 434
BstKTI GATC 4 cut(s) 625, 867, 889, 1005
BstMBI GATC 4 cut(s) 622, 864, 886, 1002
BstMWI GCNNNNNNNGC 5 cut(s) 179, 300, 370, 967, 1148
BstNI CCWGG 1 cut(s) 238
BstPAI GACNNNNGTC 2 cut(s) 320, 857
BstPI GGTNACC 2 cut(s) 322, 1090
BstSCI CCNGG 6 cut(s) 236, 317, 318, 356, 707, 782
BstSFI CTRYAG 2 cut(s) 791, 1136
BstSLI GKGCMC 1 cut(s) 1148
BstV1I GCAGC 1 cut(s) 1084
BstV2I GAAGAC 1 cut(s) 1146
BstX2I RGATCY 2 cut(s) 864, 1002
BstYI RGATCY 2 cut(s) 864, 1002
BsuRI GGCC 3 cut(s) 728, 839, 896
BtgI CCRYGG 1 cut(s) 218
BtsCI GGATG 3 cut(s) 264, 435, 440
BtsIMutI CAGTG 1 cut(s) 1014
BveI ACCTGC 1 cut(s) 308
Cac8I GCNNGC 7 cut(s) 506, 736, 1080, 1140, 1144, 1199, 1203
CfoI GCGC 2 cut(s) 263, 434
Cfr10I RCCGGY 4 cut(s) 734, 934, 987, 1078
Cfr13I GGNCC 1 cut(s) 895
Cfr9I CCCGGG 1 cut(s) 318
CseI GACGC 3 cut(s) 283, 370, 1140
Csp6I GTAC 3 cut(s) 982, 1015, 1045
CspCI CAANNNNNGTGG 2 cut(s) 862, 897
CviQI GTAC 3 cut(s) 982, 1015, 1045
DdeI CTNAG 5 cut(s) 381, 547, 626, 744, 764
DinI GGCGCC 1 cut(s) 433
DpnI GATC 4 cut(s) 624, 866, 888, 1004
DpnII GATC 4 cut(s) 622, 864, 886, 1002
EaeI YGGCCR 1 cut(s) 837
EciI GGCGGA 4 cut(s) 160, 181, 204, 1036
Eco24I GRGCYC 1 cut(s) 790
Eco57I CTGAAG 2 cut(s) 144, 710
Eco72I CACGTG 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 318
Eco91I GGTNACC 2 cut(s) 322, 1090
EcoO65I GGTNACC 2 cut(s) 322, 1090
EcoRII CCWGG 1 cut(s) 236
EcoT38I GRGCYC 1 cut(s) 790
EgeI GGCGCC 1 cut(s) 433
EheI GGCGCC 1 cut(s) 433
FaiI YATR 4 cut(s) 53, 959, 1169, 1209
FaqI GGGAC 3 cut(s) 254, 373, 1098
FauI CCCGC 6 cut(s) 278, 352, 378, 523, 876, 1075
Fnu4HI GCNGC 4 cut(s) 292, 348, 1073, 1076
FokI GGATG 3 cut(s) 251, 422, 427
FriOI GRGCYC 1 cut(s) 790
Fsp4HI GCNGC 4 cut(s) 292, 348, 1073, 1076
GlaI GCGC 2 cut(s) 262, 433
GluI GCNGC 4 cut(s) 292, 348, 1073, 1076
GsaI CCCAGC 1 cut(s) 1151
GsuI CTGGAG 1 cut(s) 806
HaeII RGCGCY 1 cut(s) 435
HaeIII GGCC 3 cut(s) 728, 839, 896
HgaI GACGC 3 cut(s) 283, 370, 1140
HhaI GCGC 2 cut(s) 263, 434
Hin1I GRCGYC 2 cut(s) 294, 432
Hin6I GCGC 2 cut(s) 261, 432
HinP1I GCGC 2 cut(s) 261, 432
HindIII AAGCTT 2 cut(s) 638, 1117
HinfI GANTC 7 cut(s) 311, 542, 715, 722, 742, 918, 1159
HphI GGTGA 9 cut(s) 238, 289, 297, 316, 325, 358, 379, 388, 1102
Hpy188I TCNGA 3 cut(s) 163, 627, 690
Hpy188III TCNNGA 6 cut(s) 404, 719, 862, 946, 1113, 1236
Hpy99I CGWCG 3 cut(s) 618, 820, 970
HpyAV CCTTC 6 cut(s) 36, 107, 168, 433, 739, 917
HpyCH4III ACNGT 1 cut(s) 795
HpyCH4IV ACGT 3 cut(s) 287, 930, 994
HpyCH4V TGCA 4 cut(s) 484, 1138, 1167, 1197
HpyF10VI GCNNNNNNNGC 5 cut(s) 179, 300, 370, 967, 1148
HpyF3I CTNAG 5 cut(s) 381, 547, 626, 744, 764
HpySE526I ACGT 3 cut(s) 287, 930, 994
Hsp92I GRCGYC 2 cut(s) 294, 432
HspAI GCGC 2 cut(s) 261, 432
KasI GGCGCC 1 cut(s) 431
Kpn2I TCCGGA 2 cut(s) 718, 1112
KroI GCCGGC 2 cut(s) 734, 1078
KroNI GCCGGC 2 cut(s) 736, 1080
Kzo9I GATC 4 cut(s) 622, 864, 886, 1002
LmnI GCTCC 3 cut(s) 513, 825, 948
Lsp1109I GCAGC 1 cut(s) 1084
MaeII ACGT 3 cut(s) 287, 930, 994
MaeIII GTNAC 6 cut(s) 11, 295, 322, 926, 972, 1090
MalI GATC 4 cut(s) 624, 866, 888, 1004
MboI GATC 4 cut(s) 622, 864, 886, 1002
MboII GAAGA 1 cut(s) 1146
MflI RGATCY 2 cut(s) 864, 1002
MhlI GDGCHC 2 cut(s) 790, 1148
MlsI TGGCCA 1 cut(s) 839
MluCI AATT 6 cut(s) 375, 562, 607, 697, 940, 1129
MluNI TGGCCA 1 cut(s) 839
Mly113I GGCGCC 1 cut(s) 432
MlyI GAGTC 2 cut(s) 305, 736
MmeI TCCRAC 4 cut(s) 486, 513, 549, 729
Mox20I TGGCCA 1 cut(s) 839
MreI CGCCGGCG 1 cut(s) 1078
MroI TCCGGA 2 cut(s) 718, 1112
MroNI GCCGGC 2 cut(s) 734, 1078
MscI TGGCCA 1 cut(s) 839
MseI TTAA 3 cut(s) 476, 531, 1034
Msp20I TGGCCA 1 cut(s) 839
MspR9I CCNGG 6 cut(s) 238, 319, 320, 358, 709, 784
Mva1269I GAATGC 1 cut(s) 182
MvaI CCWGG 1 cut(s) 238
MwoI GCNNNNNNNGC 5 cut(s) 179, 300, 370, 967, 1148
NaeI GCCGGC 2 cut(s) 736, 1080
NarI GGCGCC 1 cut(s) 432
NciI CCSGG 5 cut(s) 319, 320, 358, 709, 784
NdeII GATC 4 cut(s) 622, 864, 886, 1002
NgoMIV GCCGGC 2 cut(s) 734, 1078
NlaIV GGNNCC 2 cut(s) 433, 1004
NmuCI GTSAC 5 cut(s) 11, 295, 322, 972, 1090
NspV TTCGAA 1 cut(s) 1157
PaqCI CACCTGC 1 cut(s) 308
PcsI WCGNNNNNNNCGW 2 cut(s) 411, 927
PctI GAATGC 1 cut(s) 182
PdiI GCCGGC 2 cut(s) 736, 1080
PfeI GAWTC 5 cut(s) 542, 715, 722, 918, 1159
PfoI TCCNGGA 1 cut(s) 356
PkrI GCNGC 4 cut(s) 293, 349, 1074, 1077
PleI GAGTC 2 cut(s) 305, 736
PluTI GGCGCC 1 cut(s) 435
PmaCI CACGTG 1 cut(s) 288
PmlI CACGTG 1 cut(s) 288
PpsI GAGTC 2 cut(s) 305, 736
Ppu21I YACGTR 3 cut(s) 288, 931, 995
PshAI GACNNNNGTC 2 cut(s) 320, 857
Psp6I CCWGG 1 cut(s) 236
PspCI CACGTG 1 cut(s) 288
PspEI GGTNACC 2 cut(s) 322, 1090
PspFI CCCAGC 1 cut(s) 1147
PspGI CCWGG 1 cut(s) 236
PspN4I GGNNCC 2 cut(s) 433, 1004
PspPI GGNCC 1 cut(s) 895
PstI CTGCAG 1 cut(s) 1140
PsuI RGATCY 2 cut(s) 864, 1002
RsaI GTAC 3 cut(s) 983, 1016, 1046
RsaNI GTAC 3 cut(s) 982, 1015, 1045
SaqAI TTAA 3 cut(s) 476, 531, 1034
SatI GCNGC 4 cut(s) 292, 348, 1073, 1076
Sau3AI GATC 4 cut(s) 622, 864, 886, 1002
Sau96I GGNCC 1 cut(s) 895
SchI GAGTC 2 cut(s) 305, 736
ScrFI CCNGG 6 cut(s) 238, 319, 320, 358, 709, 784
SduI GDGCHC 2 cut(s) 790, 1148
SfcI CTRYAG 2 cut(s) 791, 1136
SfoI GGCGCC 1 cut(s) 433
SfuI TTCGAA 1 cut(s) 1157
SgrAI CRCCGGYG 1 cut(s) 1078
SmaI CCCGGG 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 6 cut(s) 375, 562, 607, 697, 940, 1129
SspDI GGCGCC 1 cut(s) 431
StyD4I CCNGG 6 cut(s) 236, 317, 318, 356, 707, 782
TaaI ACNGT 1 cut(s) 795
TaiI ACGT 3 cut(s) 290, 933, 997
TaqI TCGA 9 cut(s) 6, 314, 405, 540, 621, 713, 861, 921, 1157
TasI AATT 6 cut(s) 375, 562, 607, 697, 940, 1129
TatI WGTACW 1 cut(s) 1044
TauI GCSGC 3 cut(s) 294, 350, 1078
TfiI GAWTC 5 cut(s) 542, 715, 722, 918, 1159
Tru1I TTAA 3 cut(s) 476, 531, 1034
Tru9I TTAA 3 cut(s) 476, 531, 1034
TscAI CASTG 1 cut(s) 1014
TseFI GTSAC 5 cut(s) 11, 295, 322, 972, 1090
TseI GCWGC 1 cut(s) 1072
Tsp45I GTSAC 5 cut(s) 11, 295, 322, 972, 1090
TspMI CCCGGG 1 cut(s) 318
TspRI CASTG 1 cut(s) 1014
XapI RAATTY 1 cut(s) 940
XmaI CCCGGG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.