Rmu_co8324351.1_g000001

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8324351.1
OG0014453
Physical Location & Seq
Forward (+)
1 .. 675
675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8324351.1_g000001.1.cds

Sequence Viewer

Length: 619 bp
ctacaataagatcaccggatcactcccaagacttccaccgaaactactagaacttgctttgaagcgcaacgcgctatctgggcccttatcgaaatcgtctttcgacgggttgactcagttggaggtggtcgagctcagcgagaactcgctctccgggaccttacagtcgtggttctttctcatcccttcactgcaacaagttgacctagccaataaccacctgacaggtgtcgagatcgcgaggcccagctccggcagaggtggcgagctcgtggccgtcgacttgggcttcaacagaatcgaaggctacgcgcccgcgaatttcgctgcatttccgagactgtcgtcgctgtcgattcgttacaacaggctacgtggcaagatcccagtggagtacgggaagaacaagtcgttgaagcggttgtacttggacggtaactttctaaacggacagccgccgccggcgttgttaaccggaagttcaggaatctcgggcagcttgggggataattgtctacaggggtgtccagcttcagctcagctgtgccttccgtcgcagaaatcaaacgctatatgcaagcaagcctatggtggtggaagaggaagaccaaggtcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

205

Amino Acids

21.9

Weight (kDa)

9.73

Isoelectric Point (pI)

45.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15320
fragaria_vesca FvH4_2g05350
malus_domestica MD05G1087700.v1.1
prunus_persica Prupe.8G133500_v2.0.a1
pyrus_communis pycom05g08720
rosa_chinensis RchiOBHm_Chr6g0255611
rosa_laevigata RLG00000014827
rosa_multiflora Rmu_co8324351.1_g000001 Rmu_sc0010421.1_g000006 Rmu_sc0015454.1_g000005
rosa_roxburghii Rroxscaffold_7G00209850
rosa_rugosa Rorug05G0559700
rosa_samantha Rh6AG078300 Rh6BG070600 Rh6CG069200 Rh6DG066200
rosa_wichuraiana Rw6G006600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 164
AccI GTMKAC 2 cut(s) 280, 515
AccII CGCG 4 cut(s) 72, 240, 312, 318
AciI CCGC 4 cut(s) 316, 419, 456, 459
AclWI GGATC 2 cut(s) 26, 377
AcoI YGGCCR 1 cut(s) 274
AcsI RAATTY 1 cut(s) 320
AcuI CTGAAG 1 cut(s) 517
AfaI GTAC 2 cut(s) 396, 426
AfiI CCNNNNNNNGG 1 cut(s) 252
AgsI TTSAA 3 cut(s) 62, 293, 416
AloI GAACNNNNNNTCC 2 cut(s) 135, 167
AluBI AGCT 7 cut(s) 134, 250, 269, 499, 531, 537, 542
AluI AGCT 7 cut(s) 134, 250, 269, 499, 531, 537, 542
Alw21I GWGCWC 2 cut(s) 136, 271
Alw26I GTCTC 1 cut(s) 332
AlwI GGATC 2 cut(s) 26, 377
Ama87I CYCGRG 1 cut(s) 491
AoxI GGCC 3 cut(s) 81, 243, 274
ApaI GGGCCC 1 cut(s) 85
ApeKI GCWGC 2 cut(s) 327, 496
ApoI RAATTY 1 cut(s) 320
AspLEI GCGC 3 cut(s) 67, 74, 314
AspS9I GGNCC 4 cut(s) 81, 82, 157, 244
AsuC2I CCSGG 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 5
AvaI CYCGRG 1 cut(s) 491
AvaII GGWCC 1 cut(s) 157
BaeGI GKGCMC 1 cut(s) 85
BanII GRGCYC 3 cut(s) 85, 136, 271
BarI GAAGNNNNNNTAC 2 cut(s) 408, 440
BauI CACGAG 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 611
Bbv12I GWGCWC 2 cut(s) 136, 271
BbvI GCAGC 2 cut(s) 314, 508
BceAI ACGGC 1 cut(s) 261
BcnI CCSGG 1 cut(s) 155
BcoDI GTCTC 1 cut(s) 332
BfaI CTAG 2 cut(s) 48, 207
BfmI CTRYAG 1 cut(s) 516
BisI GCNGC 4 cut(s) 328, 456, 459, 497
BlpI GCTNAGC 2 cut(s) 135, 538
BlsI GCNGC 4 cut(s) 329, 457, 460, 498
Bme1390I CCNGG 1 cut(s) 155
Bme18I GGWCC 1 cut(s) 157
BmeT110I CYCGRG 1 cut(s) 491
BmgT120I GGNCC 4 cut(s) 81, 82, 157, 244
BmiI GGNNCC 2 cut(s) 83, 158
BmrFI CCNGG 1 cut(s) 155
BmrI ACTGGG 1 cut(s) 381
BmuI ACTGGG 1 cut(s) 381
BoxI GACNNNNGTC 3 cut(s) 228, 344, 611
BpiI GAAGAC 1 cut(s) 611
Bpu1102I GCTNAGC 2 cut(s) 135, 538
BpuMI CCSGG 1 cut(s) 155
BsaAI YACGTR 1 cut(s) 375
BsaJI CCNNGG 1 cut(s) 609
BsaWI WCCGGW 2 cut(s) 15, 474
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bsc4I CCNNNNNNNGG 1 cut(s) 252
Bse118I RCCGGY 1 cut(s) 461
Bse1I ACTGG 1 cut(s) 387
BseDI CCNNGG 1 cut(s) 609
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 252
BseMII CTCAG 3 cut(s) 129, 149, 552
BseNI ACTGG 1 cut(s) 387
BseSI GKGCMC 1 cut(s) 85
BseXI GCAGC 2 cut(s) 314, 508
BseYI CCCAGC 1 cut(s) 246
Bsh1236I CGCG 4 cut(s) 72, 240, 312, 318
BshFI GGCC 3 cut(s) 83, 245, 276
BsiHKAI GWGCWC 2 cut(s) 136, 271
BsiHKCI CYCGRG 1 cut(s) 491
BsiSI CCGG 5 cut(s) 16, 154, 253, 462, 475
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 252
BsmAI GTCTC 1 cut(s) 332
BsmFI GGGAC 1 cut(s) 170
BsnI GGCC 3 cut(s) 83, 245, 276
BsoBI CYCGRG 1 cut(s) 491
Bsp120I GGGCCC 1 cut(s) 81
Bsp1286I GDGCHC 3 cut(s) 85, 136, 271
Bsp143I GATC 4 cut(s) 10, 18, 235, 382
Bsp1720I GCTNAGC 2 cut(s) 135, 538
Bsp68I TCGCGA 1 cut(s) 240
BspACI CCGC 4 cut(s) 316, 419, 456, 459
BspANI GGCC 3 cut(s) 83, 245, 276
BspCNI CTCAG 3 cut(s) 128, 148, 551
BspFNI CGCG 4 cut(s) 72, 240, 312, 318
BspLI GGNNCC 2 cut(s) 83, 158
BspPI GGATC 2 cut(s) 26, 377
BsrFI RCCGGY 1 cut(s) 461
BsrI ACTGG 1 cut(s) 387
BssAI RCCGGY 1 cut(s) 461
BssECI CCNNGG 1 cut(s) 609
BssMI GATC 4 cut(s) 10, 18, 235, 382
BssSI CACGAG 1 cut(s) 270
BssT1I CCWWGG 1 cut(s) 609
Bst2BI CACGAG 1 cut(s) 270
Bst4CI ACNGT 3 cut(s) 166, 343, 435
Bst6I CTCTTC 1 cut(s) 593
BstBAI YACGTR 1 cut(s) 375
BstC8I GCNNGC 5 cut(s) 267, 316, 463, 579, 583
BstDEI CTNAG 3 cut(s) 115, 135, 538
BstF5I GGATG 1 cut(s) 181
BstFNI CGCG 4 cut(s) 72, 240, 312, 318
BstHHI GCGC 3 cut(s) 67, 74, 314
BstKTI GATC 4 cut(s) 13, 21, 238, 385
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 4 cut(s) 10, 18, 235, 382
BstMWI GCNNNNNNNGC 4 cut(s) 71, 80, 262, 324
BstPAI GACNNNNGTC 3 cut(s) 228, 344, 611
BstSCI CCNGG 1 cut(s) 153
BstSFI CTRYAG 1 cut(s) 516
BstSLI GKGCMC 1 cut(s) 85
BstUI CGCG 4 cut(s) 72, 240, 312, 318
BstV1I GCAGC 2 cut(s) 314, 508
BstV2I GAAGAC 1 cut(s) 611
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
BsuRI GGCC 3 cut(s) 83, 245, 276
BtsCI GGATG 1 cut(s) 181
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 2 cut(s) 189, 394
BtuMI TCGCGA 1 cut(s) 240
Cac8I GCNNGC 5 cut(s) 267, 316, 463, 579, 583
CfoI GCGC 3 cut(s) 67, 74, 314
Cfr10I RCCGGY 1 cut(s) 461
Cfr13I GGNCC 4 cut(s) 81, 82, 157, 244
Csp6I GTAC 2 cut(s) 395, 425
CviQI GTAC 2 cut(s) 395, 425
DdeI CTNAG 3 cut(s) 115, 135, 538
DpnI GATC 4 cut(s) 12, 20, 237, 384
DpnII GATC 4 cut(s) 10, 18, 235, 382
DrdI GACNNNNNNGTC 1 cut(s) 164
DseDI GACNNNNNNGTC 1 cut(s) 164
EaeI YGGCCR 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 593
EarI CTCTTC 1 cut(s) 593
Ecl136II GAGCTC 2 cut(s) 134, 269
Eco130I CCWWGG 1 cut(s) 609
Eco24I GRGCYC 3 cut(s) 85, 136, 271
Eco47I GGWCC 1 cut(s) 157
Eco53kI GAGCTC 2 cut(s) 134, 269
Eco57I CTGAAG 1 cut(s) 517
Eco88I CYCGRG 1 cut(s) 491
EcoICRI GAGCTC 2 cut(s) 134, 269
EcoO109I RGGNCCY 2 cut(s) 82, 157
EcoT14I CCWWGG 1 cut(s) 609
EcoT38I GRGCYC 3 cut(s) 85, 136, 271
ErhI CCWWGG 1 cut(s) 609
FaiI YATR 3 cut(s) 573, 575, 589
FaqI GGGAC 1 cut(s) 170
FauI CCCGC 1 cut(s) 323
FblI GTMKAC 2 cut(s) 280, 515
Fnu4HI GCNGC 4 cut(s) 328, 456, 459, 497
FokI GGATG 1 cut(s) 168
FriOI GRGCYC 3 cut(s) 85, 136, 271
Fsp4HI GCNGC 4 cut(s) 328, 456, 459, 497
FspBI CTAG 2 cut(s) 48, 207
GlaI GCGC 3 cut(s) 66, 73, 313
GluI GCNGC 4 cut(s) 328, 456, 459, 497
GsaI CCCAGC 1 cut(s) 250
HaeIII GGCC 3 cut(s) 83, 245, 276
HapII CCGG 5 cut(s) 16, 154, 253, 462, 475
HhaI GCGC 3 cut(s) 67, 74, 314
Hin6I GCGC 3 cut(s) 65, 72, 312
HinP1I GCGC 3 cut(s) 65, 72, 312
HincII GTYRAC 4 cut(s) 112, 203, 281, 472
HindII GTYRAC 4 cut(s) 112, 203, 281, 472
HinfI GANTC 4 cut(s) 113, 298, 356, 487
HpaI GTTAAC 1 cut(s) 472
HpaII CCGG 5 cut(s) 16, 154, 253, 462, 475
HphI GGTGA 1 cut(s) 5
Hpy166II GTNNAC 5 cut(s) 112, 203, 281, 472, 516
Hpy188I TCNGA 1 cut(s) 337
Hpy188III TCNNGA 4 cut(s) 233, 239, 484, 616
Hpy8I GTNNAC 5 cut(s) 112, 203, 281, 472, 516
Hpy99I CGWCG 4 cut(s) 108, 282, 350, 557
HpyAV CCTTC 3 cut(s) 196, 297, 558
HpyCH4III ACNGT 3 cut(s) 166, 343, 435
HpyCH4IV ACGT 1 cut(s) 374
HpyCH4V TGCA 3 cut(s) 194, 330, 577
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 80, 262, 324
HpyF3I CTNAG 3 cut(s) 115, 135, 538
HpySE526I ACGT 1 cut(s) 374
HspAI GCGC 3 cut(s) 65, 72, 312
KroI GCCGGC 1 cut(s) 461
KroNI GCCGGC 1 cut(s) 463
KspAI GTTAAC 1 cut(s) 472
Kzo9I GATC 4 cut(s) 10, 18, 235, 382
LmnI GCTCC 1 cut(s) 255
Lsp1109I GCAGC 2 cut(s) 314, 508
MaeI CTAG 2 cut(s) 48, 207
MaeII ACGT 1 cut(s) 374
MaeIII GTNAC 2 cut(s) 360, 435
MalI GATC 4 cut(s) 12, 20, 237, 384
MboI GATC 4 cut(s) 10, 18, 235, 382
MboII GAAGA 3 cut(s) 413, 610, 616
MflI RGATCY 1 cut(s) 382
MhlI GDGCHC 3 cut(s) 85, 136, 271
MluCI AATT 2 cut(s) 320, 509
MlyI GAGTC 1 cut(s) 107
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 4 cut(s) 116, 235, 252, 594
MreI CGCCGGCG 1 cut(s) 461
MroNI GCCGGC 1 cut(s) 461
MseI TTAA 1 cut(s) 471
MspA1I CMGCKG 1 cut(s) 542
MspI CCGG 5 cut(s) 16, 154, 253, 462, 475
MspR9I CCNGG 1 cut(s) 155
MvnI CGCG 4 cut(s) 72, 240, 312, 318
MwoI GCNNNNNNNGC 4 cut(s) 71, 80, 262, 324
NaeI GCCGGC 1 cut(s) 463
NciI CCSGG 1 cut(s) 155
NdeII GATC 4 cut(s) 10, 18, 235, 382
NgoMIV GCCGGC 1 cut(s) 461
NlaIV GGNNCC 2 cut(s) 83, 158
NruI TCGCGA 1 cut(s) 240
PcsI WCGNNNNNNNCGW 3 cut(s) 136, 277, 351
PdiI GCCGGC 1 cut(s) 463
PfeI GAWTC 3 cut(s) 298, 356, 487
PfoI TCCNGGA 1 cut(s) 153
PkrI GCNGC 4 cut(s) 329, 457, 460, 498
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
Ppu21I YACGTR 1 cut(s) 375
PpuMI RGGWCCY 1 cut(s) 157
PshAI GACNNNNGTC 3 cut(s) 228, 344, 611
Psp124BI GAGCTC 2 cut(s) 136, 271
Psp5II RGGWCCY 1 cut(s) 157
PspFI CCCAGC 1 cut(s) 246
PspN4I GGNNCC 2 cut(s) 83, 158
PspOMI GGGCCC 1 cut(s) 81
PspPI GGNCC 4 cut(s) 81, 82, 157, 244
PspPPI RGGWCCY 1 cut(s) 157
PsuI RGATCY 1 cut(s) 382
PvuII CAGCTG 1 cut(s) 542
RruI TCGCGA 1 cut(s) 240
RsaI GTAC 2 cut(s) 396, 426
RsaNI GTAC 2 cut(s) 395, 425
SacI GAGCTC 2 cut(s) 136, 271
SalI GTCGAC 1 cut(s) 279
SaqAI TTAA 1 cut(s) 471
SatI GCNGC 4 cut(s) 328, 456, 459, 497
Sau3AI GATC 4 cut(s) 10, 18, 235, 382
Sau96I GGNCC 4 cut(s) 81, 82, 157, 244
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 155
SduI GDGCHC 3 cut(s) 85, 136, 271
SfcI CTRYAG 1 cut(s) 516
SgrAI CRCCGGYG 1 cut(s) 461
SinI GGWCC 1 cut(s) 157
Sse9I AATT 2 cut(s) 320, 509
SsiI CCGC 4 cut(s) 316, 419, 456, 459
SspMI CTAG 2 cut(s) 48, 207
SstI GAGCTC 2 cut(s) 136, 271
StyD4I CCNGG 1 cut(s) 153
StyI CCWWGG 1 cut(s) 609
TaaI ACNGT 3 cut(s) 166, 343, 435
TaiI ACGT 1 cut(s) 377
TaqI TCGA 7 cut(s) 90, 103, 130, 232, 280, 301, 354
TasI AATT 2 cut(s) 320, 509
TatI WGTACW 1 cut(s) 424
TauI GCSGC 2 cut(s) 458, 461
TfiI GAWTC 3 cut(s) 298, 356, 487
Tru1I TTAA 1 cut(s) 471
Tru9I TTAA 1 cut(s) 471
TscAI CASTG 2 cut(s) 196, 394
TseI GCWGC 2 cut(s) 327, 496
TspGWI ACGGA 2 cut(s) 463, 541
TspRI CASTG 2 cut(s) 196, 394
VpaK11BI GGWCC 1 cut(s) 157
XapI RAATTY 1 cut(s) 320
XmiI GTMKAC 2 cut(s) 280, 515
XspI CTAG 2 cut(s) 48, 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.