Rroxscaffold_7G00209850

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
60113779 .. 60114951
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00209850.1

Sequence Viewer

Length: 1173 bp
ATGTCTGACCTTAACTTTCACCTCCTCCTCCTCCTCCAATTTTCTCTCTTCTTCACCAACCATGTCCAAGCCCTCACTTCACCTTCAGACATCTCAGCTCTCAAGGCCTTCAAAGCCTCAATCAAACCCTCCTCCATTCCCTCCTGGTCTTGCCTAGCCTCATGGGACTTCACCACCGACCCATGCACCCTCCCCCACCGAATCCACTTTACTTGTGGCGTCACCTGCTCACCGGACTCCACTCGGGTCACCCAGATCACACTCGACCCGGCCGGCTACTCCGGCACACTCACTCCACAAATTTCTCAGCTCTCTCATCTCTCCACTCTCGACCTCTCCGATAACTCCTTCTTCGGCCCAATCCCATCCTCCATTTCCTCCCTCTTCTACCTCCAAACCTTGACTCTCCGATCCAACTCGTTCTCCGGCTCCCTCACTCCATCCATCACCAAGCTCAAGTCTTTAGAATCCCTAGACATTTCCCACAATTCCTTAACAGGGTTTCTCCCAAACTCCTTGAGTTCTTTATCCAACTTGAGAAGACTCGATCTCAGCTACAACAAGATCACCGGATCACTCCCAAGACTTCCACCGAGACTACTAGAACTCGCTCTGAAGCGCAACTCGCTATCTGGGCCCTTATTGAAATCGTCTTTTGACGGGTTGACTCAGTTGGAGGTGGTCGAGCTCAGCGAGAACTCGCTCTCCGGGACCTTACAGTCGTGGTTCTTTCTCATCCCTTCACTGCAACAAGTTGACCTAGCCAATAACCGCCTGACAGGTGTCGAGATCGCGAAGCCCAGCTCCGGCGGAGGTGGCGAGCTCGTGGCCGTCGACTTAGGCTTCAACAGAATCGAAGGCTACGCGCCCGCGAATTTCGCGGCATTTCCGAGACTGTCGTCGCTGTCGGTTCGTTACAACAGGCTACGTGGCAAGATCCCAGTGGAGTACGGGAAGAACAAGTCGTTGAAGCGGTTGTACTTGGACGGTAACTTTCTGAATGGACAGCCGCCGCCTGCGTTGTTAACCGGAAGTTCGGGAATCTCCGGCAGCTTGGGGGATAATTGCCTACAGGGGTGTCCACCTTCAGCTCAGCTGTGCCTTCCGTCGCAGAAATCCAACGCTATATGCAAGCAAGCCTATCGTGGAGGAAGCGGAAAACCGAGGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

390

Amino Acids

42.0

Weight (kDa)

9.18

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 100 - 316 8.2e-11 Leucine-rich repeat region
LRR_8 PF13855 131 - 189 2.1e-10 Leucine rich repeat
LRR_4 PF12799 153 - 190 1.5e-06 Leucine Rich repeats (2 copies)
LRR_8 PF13855 198 - 259 2.5e-06 Leucine rich repeat
LRR_8 PF13855 275 - 331 9.6e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014453)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 233
AasI GACNNNNNNGTC 1 cut(s) 718
Acc36I ACCTGC 1 cut(s) 233
AccI GTMKAC 1 cut(s) 834
AccII CGCG 4 cut(s) 794, 866, 872, 881
AciI CCGC 8 cut(s) 772, 810, 870, 881, 973, 1010, 1013, 1155
AclWI GGATC 3 cut(s) 405, 580, 931
AcoI YGGCCR 2 cut(s) 270, 828
AcsI RAATTY 2 cut(s) 300, 874
AcuI CTGAAG 3 cut(s) 69, 635, 1071
AcyI GRCGYC 1 cut(s) 219
AfaI GTAC 2 cut(s) 950, 980
AfiI CCNNNNNNNGG 2 cut(s) 498, 806
AgsI TTSAA 4 cut(s) 112, 646, 847, 970
AjnI CCWGG 1 cut(s) 143
AloI GAACNNNNNNTCC 2 cut(s) 689, 721
Alw21I GWGCWC 2 cut(s) 690, 825
Alw26I GTCTC 2 cut(s) 589, 886
AlwI GGATC 3 cut(s) 405, 580, 931
Ama87I CYCGRG 1 cut(s) 243
AoxI GGCC 5 cut(s) 105, 270, 355, 635, 828
ApaI GGGCCC 1 cut(s) 639
ApeKI GCWGC 1 cut(s) 1050
ApoI RAATTY 2 cut(s) 300, 874
AspLEI GCGC 2 cut(s) 621, 868
AspS9I GGNCC 4 cut(s) 356, 635, 636, 711
AsuC2I CCSGG 2 cut(s) 269, 709
AsuHPI GGTGA 9 cut(s) 11, 46, 72, 163, 214, 222, 241, 439, 559
AvaI CYCGRG 1 cut(s) 243
AvaII GGWCC 1 cut(s) 711
BaeGI GKGCMC 1 cut(s) 639
BanII GRGCYC 3 cut(s) 639, 690, 825
BarI GAAGNNNNNNTAC 2 cut(s) 962, 994
BauI CACGAG 1 cut(s) 824
BbsI GAAGAC 1 cut(s) 547
Bbv12I GWGCWC 2 cut(s) 690, 825
BbvI GCAGC 1 cut(s) 1062
BccI CCATC 3 cut(s) 373, 448, 452
BceAI ACGGC 1 cut(s) 815
BcgI CGANNNNNNTGC 2 cut(s) 1124, 1158
BciT130I CCWGG 1 cut(s) 145
BcnI CCSGG 2 cut(s) 269, 709
BcoDI GTCTC 2 cut(s) 589, 886
BfaI CTAG 4 cut(s) 155, 473, 602, 761
BfmI CTRYAG 1 cut(s) 1070
BfuAI ACCTGC 1 cut(s) 233
BisI GCNGC 4 cut(s) 882, 1010, 1013, 1051
BlpI GCTNAGC 2 cut(s) 689, 1092
BlsI GCNGC 4 cut(s) 883, 1011, 1014, 1052
Bme1390I CCNGG 3 cut(s) 145, 269, 709
Bme18I GGWCC 1 cut(s) 711
BmeT110I CYCGRG 1 cut(s) 243
BmgT120I GGNCC 4 cut(s) 356, 635, 636, 711
BmiI GGNNCC 3 cut(s) 430, 637, 712
BmrFI CCNGG 3 cut(s) 145, 269, 709
BmrI ACTGGG 1 cut(s) 935
BmuI ACTGGG 1 cut(s) 935
BoxI GACNNNNGTC 2 cut(s) 782, 898
BpiI GAAGAC 1 cut(s) 547
Bpu1102I GCTNAGC 2 cut(s) 689, 1092
BpuEI CTTGAG 4 cut(s) 86, 440, 538, 556
BpuMI CCSGG 2 cut(s) 269, 709
BsaAI YACGTR 1 cut(s) 929
BsaHI GRCGYC 1 cut(s) 219
BsaJI CCNNGG 1 cut(s) 1163
BsaWI WCCGGW 3 cut(s) 232, 569, 1028
BsaXI ACNNNNNCTCC 6 cut(s) 277, 307, 407, 437, 689, 719
Bsc4I CCNNNNNNNGG 2 cut(s) 498, 806
Bse118I RCCGGY 1 cut(s) 272
Bse1I ACTGG 1 cut(s) 941
BseBI CCWGG 1 cut(s) 145
BseDI CCNNGG 1 cut(s) 1163
BseGI GGATG 3 cut(s) 365, 440, 735
BseLI CCNNNNNNNGG 2 cut(s) 498, 806
BseMII CTCAG 6 cut(s) 108, 320, 565, 683, 703, 1106
BseNI ACTGG 1 cut(s) 941
BseRI GAGGAG 5 cut(s) 14, 17, 20, 23, 121
BseSI GKGCMC 1 cut(s) 639
BseX3I CGGCCG 1 cut(s) 270
BseXI GCAGC 1 cut(s) 1062
BseYI CCCAGC 1 cut(s) 800
Bsh1236I CGCG 4 cut(s) 794, 866, 872, 881
Bsh1285I CGRYCG 1 cut(s) 273
BshFI GGCC 5 cut(s) 107, 272, 357, 637, 830
BsiEI CGRYCG 1 cut(s) 273
BsiHKAI GWGCWC 2 cut(s) 690, 825
BsiHKCI CYCGRG 1 cut(s) 243
BslFI GGGAC 2 cut(s) 179, 724
BslI CCNNNNNNNGG 2 cut(s) 498, 806
BsmAI GTCTC 2 cut(s) 589, 886
BsmFI GGGAC 2 cut(s) 179, 724
BsnI GGCC 5 cut(s) 107, 272, 357, 637, 830
BsoBI CYCGRG 1 cut(s) 243
Bsp120I GGGCCC 1 cut(s) 635
Bsp1286I GDGCHC 3 cut(s) 639, 690, 825
Bsp143I GATC 7 cut(s) 255, 410, 547, 564, 572, 789, 936
Bsp1720I GCTNAGC 2 cut(s) 689, 1092
Bsp68I TCGCGA 1 cut(s) 794
BspACI CCGC 8 cut(s) 772, 810, 870, 881, 973, 1010, 1013, 1155
BspANI GGCC 5 cut(s) 107, 272, 357, 637, 830
BspCNI CTCAG 6 cut(s) 107, 319, 564, 682, 702, 1105
BspFNI CGCG 4 cut(s) 794, 866, 872, 881
BspLI GGNNCC 3 cut(s) 430, 637, 712
BspMI ACCTGC 1 cut(s) 233
BspPI GGATC 3 cut(s) 405, 580, 931
BsrFI RCCGGY 1 cut(s) 272
BsrI ACTGG 1 cut(s) 941
BssAI RCCGGY 1 cut(s) 272
BssECI CCNNGG 1 cut(s) 1163
BssMI GATC 7 cut(s) 255, 410, 547, 564, 572, 789, 936
BssNI GRCGYC 1 cut(s) 219
BssSI CACGAG 1 cut(s) 824
Bst2BI CACGAG 1 cut(s) 824
Bst2UI CCWGG 1 cut(s) 145
Bst4CI ACNGT 3 cut(s) 720, 897, 989
Bst6I CTCTTC 2 cut(s) 53, 389
BstACI GRCGYC 1 cut(s) 219
BstBAI YACGTR 1 cut(s) 929
BstC8I GCNNGC 6 cut(s) 274, 821, 870, 1017, 1133, 1137
BstDEI CTNAG 7 cut(s) 94, 306, 551, 669, 689, 838, 1092
BstEII GGTNACC 1 cut(s) 247
BstF5I GGATG 3 cut(s) 365, 440, 735
BstFNI CGCG 4 cut(s) 794, 866, 872, 881
BstHHI GCGC 2 cut(s) 621, 868
BstKTI GATC 7 cut(s) 258, 413, 550, 567, 575, 792, 939
BstMAI GTCTC 2 cut(s) 589, 886
BstMBI GATC 7 cut(s) 255, 410, 547, 564, 572, 789, 936
BstMCI CGRYCG 1 cut(s) 273
BstMWI GCNNNNNNNGC 8 cut(s) 104, 113, 225, 282, 625, 634, 816, 878
BstNI CCWGG 1 cut(s) 145
BstPAI GACNNNNGTC 2 cut(s) 782, 898
BstPI GGTNACC 1 cut(s) 247
BstSCI CCNGG 3 cut(s) 143, 267, 707
BstSFI CTRYAG 1 cut(s) 1070
BstSLI GKGCMC 1 cut(s) 639
BstUI CGCG 4 cut(s) 794, 866, 872, 881
BstV1I GCAGC 1 cut(s) 1062
BstV2I GAAGAC 1 cut(s) 547
BstX2I RGATCY 1 cut(s) 936
BstYI RGATCY 1 cut(s) 936
BstZI CGGCCG 1 cut(s) 270
BsuRI GGCC 5 cut(s) 107, 272, 357, 637, 830
BtsCI GGATG 3 cut(s) 365, 440, 735
BtsI GCAGTG 1 cut(s) 743
BtsIMutI CAGTG 2 cut(s) 743, 948
BtuMI TCGCGA 1 cut(s) 794
BveI ACCTGC 1 cut(s) 233
Cac8I GCNNGC 6 cut(s) 274, 821, 870, 1017, 1133, 1137
CfoI GCGC 2 cut(s) 621, 868
Cfr10I RCCGGY 1 cut(s) 272
Cfr13I GGNCC 4 cut(s) 356, 635, 636, 711
CseI GACGC 1 cut(s) 208
Csp6I GTAC 2 cut(s) 949, 979
CspCI CAANNNNNGTGG 2 cut(s) 194, 229
CviAII CATG 3 cut(s) 62, 162, 183
CviQI GTAC 2 cut(s) 949, 979
DdeI CTNAG 7 cut(s) 94, 306, 551, 669, 689, 838, 1092
DpnI GATC 7 cut(s) 257, 412, 549, 566, 574, 791, 938
DpnII GATC 7 cut(s) 255, 410, 547, 564, 572, 789, 936
DrdI GACNNNNNNGTC 1 cut(s) 718
DseDI GACNNNNNNGTC 1 cut(s) 718
EaeI YGGCCR 2 cut(s) 270, 828
EagI CGGCCG 1 cut(s) 270
Eam1104I CTCTTC 2 cut(s) 53, 389
EarI CTCTTC 2 cut(s) 53, 389
EciI GGCGGA 1 cut(s) 825
Ecl136II GAGCTC 2 cut(s) 688, 823
EclXI CGGCCG 1 cut(s) 270
Eco147I AGGCCT 1 cut(s) 107
Eco24I GRGCYC 3 cut(s) 639, 690, 825
Eco47I GGWCC 1 cut(s) 711
Eco52I CGGCCG 1 cut(s) 270
Eco53kI GAGCTC 2 cut(s) 688, 823
Eco57I CTGAAG 3 cut(s) 69, 635, 1071
Eco88I CYCGRG 1 cut(s) 243
Eco91I GGTNACC 1 cut(s) 247
EcoICRI GAGCTC 2 cut(s) 688, 823
EcoO109I RGGNCCY 2 cut(s) 636, 711
EcoO65I GGTNACC 1 cut(s) 247
EcoRII CCWGG 1 cut(s) 143
EcoT38I GRGCYC 3 cut(s) 639, 690, 825
FaeI CATG 3 cut(s) 65, 165, 186
FaiI YATR 5 cut(s) 63, 163, 184, 1127, 1129
FaqI GGGAC 2 cut(s) 179, 724
FatI CATG 3 cut(s) 61, 161, 182
FauI CCCGC 1 cut(s) 877
FblI GTMKAC 1 cut(s) 834
Fnu4HI GCNGC 4 cut(s) 882, 1010, 1013, 1051
FokI GGATG 3 cut(s) 352, 427, 722
FriOI GRGCYC 3 cut(s) 639, 690, 825
Fsp4HI GCNGC 4 cut(s) 882, 1010, 1013, 1051
FspBI CTAG 4 cut(s) 155, 473, 602, 761
GlaI GCGC 2 cut(s) 620, 867
GluI GCNGC 4 cut(s) 882, 1010, 1013, 1051
GsaI CCCAGC 1 cut(s) 804
HaeIII GGCC 5 cut(s) 107, 272, 357, 637, 830
HgaI GACGC 1 cut(s) 208
HhaI GCGC 2 cut(s) 621, 868
Hin1I GRCGYC 1 cut(s) 219
Hin1II CATG 3 cut(s) 65, 165, 186
Hin6I GCGC 2 cut(s) 619, 866
HinP1I GCGC 2 cut(s) 619, 866
HincII GTYRAC 4 cut(s) 666, 757, 835, 1026
HindII GTYRAC 4 cut(s) 666, 757, 835, 1026
HinfI GANTC 8 cut(s) 201, 236, 403, 467, 543, 667, 852, 1041
HpaI GTTAAC 1 cut(s) 1026
HphI GGTGA 9 cut(s) 11, 46, 72, 163, 214, 222, 241, 439, 559
Hpy166II GTNNAC 5 cut(s) 666, 757, 835, 1026, 1082
Hpy188I TCNGA 7 cut(s) 7, 88, 340, 410, 615, 891, 999
Hpy188III TCNNGA 5 cut(s) 329, 787, 793, 1038, 1170
Hpy8I GTNNAC 5 cut(s) 666, 757, 835, 1026, 1082
Hpy99I CGWCG 3 cut(s) 836, 904, 1111
HpyAV CCTTC 7 cut(s) 93, 118, 358, 750, 851, 1095, 1112
HpyCH4III ACNGT 3 cut(s) 720, 897, 989
HpyCH4IV ACGT 1 cut(s) 928
HpyCH4V TGCA 3 cut(s) 186, 748, 1131
HpyF10VI GCNNNNNNNGC 8 cut(s) 104, 113, 225, 282, 625, 634, 816, 878
HpyF3I CTNAG 7 cut(s) 94, 306, 551, 669, 689, 838, 1092
HpySE526I ACGT 1 cut(s) 928
Hsp92I GRCGYC 1 cut(s) 219
Hsp92II CATG 3 cut(s) 65, 165, 186
HspAI GCGC 2 cut(s) 619, 866
KroI GCCGGC 1 cut(s) 272
KroNI GCCGGC 1 cut(s) 274
KspAI GTTAAC 1 cut(s) 1026
Kzo9I GATC 7 cut(s) 255, 410, 547, 564, 572, 789, 936
LmnI GCTCC 2 cut(s) 434, 809
Lsp1109I GCAGC 1 cut(s) 1062
MaeI CTAG 4 cut(s) 155, 473, 602, 761
MaeII ACGT 1 cut(s) 928
MaeIII GTNAC 4 cut(s) 220, 247, 914, 989
MalI GATC 7 cut(s) 257, 412, 549, 566, 574, 791, 938
MboI GATC 7 cut(s) 255, 410, 547, 564, 572, 789, 936
MboII GAAGA 6 cut(s) 40, 43, 343, 376, 552, 967
MflI RGATCY 1 cut(s) 936
MhlI GDGCHC 3 cut(s) 639, 690, 825
MluCI AATT 5 cut(s) 38, 300, 487, 874, 1063
MlyI GAGTC 4 cut(s) 230, 397, 537, 661
MmeI TCCRAC 4 cut(s) 438, 555, 654, 1143
MroNI GCCGGC 1 cut(s) 272
MseI TTAA 3 cut(s) 12, 494, 1025
MspA1I CMGCKG 1 cut(s) 1096
MspR9I CCNGG 3 cut(s) 145, 269, 709
MvaI CCWGG 1 cut(s) 145
MvnI CGCG 4 cut(s) 794, 866, 872, 881
MwoI GCNNNNNNNGC 8 cut(s) 104, 113, 225, 282, 625, 634, 816, 878
NaeI GCCGGC 1 cut(s) 274
NciI CCSGG 2 cut(s) 269, 709
NdeII GATC 7 cut(s) 255, 410, 547, 564, 572, 789, 936
NgoMIV GCCGGC 1 cut(s) 272
NlaIII CATG 3 cut(s) 65, 165, 186
NlaIV GGNNCC 3 cut(s) 430, 637, 712
NmuCI GTSAC 2 cut(s) 220, 247
NruI TCGCGA 1 cut(s) 794
PaqCI CACCTGC 1 cut(s) 233
PceI AGGCCT 1 cut(s) 107
PcsI WCGNNNNNNNCGW 3 cut(s) 336, 690, 831
PdiI GCCGGC 1 cut(s) 274
PfeI GAWTC 4 cut(s) 201, 467, 852, 1041
PfoI TCCNGGA 1 cut(s) 707
PkrI GCNGC 4 cut(s) 883, 1011, 1014, 1052
PleI GAGTC 4 cut(s) 230, 397, 537, 661
PpsI GAGTC 4 cut(s) 230, 397, 537, 661
Ppu21I YACGTR 1 cut(s) 929
PpuMI RGGWCCY 1 cut(s) 711
PshAI GACNNNNGTC 2 cut(s) 782, 898
Psp124BI GAGCTC 2 cut(s) 690, 825
Psp5II RGGWCCY 1 cut(s) 711
Psp6I CCWGG 1 cut(s) 143
PspEI GGTNACC 1 cut(s) 247
PspFI CCCAGC 1 cut(s) 800
PspGI CCWGG 1 cut(s) 143
PspN4I GGNNCC 3 cut(s) 430, 637, 712
PspOMI GGGCCC 1 cut(s) 635
PspPI GGNCC 4 cut(s) 356, 635, 636, 711
PspPPI RGGWCCY 1 cut(s) 711
PsuI RGATCY 1 cut(s) 936
PvuII CAGCTG 1 cut(s) 1096
RruI TCGCGA 1 cut(s) 794
RsaI GTAC 2 cut(s) 950, 980
RsaNI GTAC 2 cut(s) 949, 979
SacI GAGCTC 2 cut(s) 690, 825
SalI GTCGAC 1 cut(s) 833
SaqAI TTAA 3 cut(s) 12, 494, 1025
SatI GCNGC 4 cut(s) 882, 1010, 1013, 1051
Sau3AI GATC 7 cut(s) 255, 410, 547, 564, 572, 789, 936
Sau96I GGNCC 4 cut(s) 356, 635, 636, 711
SchI GAGTC 4 cut(s) 230, 397, 537, 661
ScrFI CCNGG 3 cut(s) 145, 269, 709
SduI GDGCHC 3 cut(s) 639, 690, 825
SfcI CTRYAG 1 cut(s) 1070
SinI GGWCC 1 cut(s) 711
SmlI CTYRAG 4 cut(s) 101, 455, 517, 535
SmoI CTYRAG 4 cut(s) 101, 455, 517, 535
Sse9I AATT 5 cut(s) 38, 300, 487, 874, 1063
SseBI AGGCCT 1 cut(s) 107
SsiI CCGC 8 cut(s) 772, 810, 870, 881, 973, 1010, 1013, 1155
SspMI CTAG 4 cut(s) 155, 473, 602, 761
SstI GAGCTC 2 cut(s) 690, 825
StuI AGGCCT 1 cut(s) 107
StyD4I CCNGG 3 cut(s) 143, 267, 707
TaaI ACNGT 3 cut(s) 720, 897, 989
TaiI ACGT 1 cut(s) 931
TaqI TCGA 7 cut(s) 264, 330, 546, 684, 786, 834, 855
TasI AATT 5 cut(s) 38, 300, 487, 874, 1063
TatI WGTACW 1 cut(s) 978
TauI GCSGC 3 cut(s) 884, 1012, 1015
TfiI GAWTC 4 cut(s) 201, 467, 852, 1041
Tru1I TTAA 3 cut(s) 12, 494, 1025
Tru9I TTAA 3 cut(s) 12, 494, 1025
TscAI CASTG 2 cut(s) 750, 948
TseFI GTSAC 2 cut(s) 220, 247
TseI GCWGC 1 cut(s) 1050
Tsp45I GTSAC 2 cut(s) 220, 247
TspGWI ACGGA 1 cut(s) 1095
TspRI CASTG 2 cut(s) 750, 948
VpaK11BI GGWCC 1 cut(s) 711
XapI RAATTY 2 cut(s) 300, 874
XcmI CCANNNNNNNNNTGG 1 cut(s) 212
XmiI GTMKAC 1 cut(s) 834
XspI CTAG 4 cut(s) 155, 473, 602, 761
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.