Rh6BG070600

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0014453
Physical Location & Seq
Reverse (-)
10674037 .. 10675477
1441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG070600.1

Sequence Viewer

Length: 768 bp
ATGAAAACTAGTACCAGACTTACCAGACACGGAGACGTGTGTGATGTAAGGCATCCCTTCACACAGCATTTTCACCAAATCATGAATATAACTAAACAAAATATCTTGGTGAATCCTAGTGCTCGCCAACCAGATGGACTCGATCTCAGCTACAATAAGATCACCGGATCACTCCCAAGACTTCCACCGAAACTACTAGAACTCGCTTTGAAGCGCAACGCGCTATCTGGGCCCTTATCGAAATCGTCTTTCGACGGGTTGATTCAGTTGGAGGTGGTCGAGCTCAGCGAGAACTCGCTCTCCGGGACCTTACAGTCGTGGTTCTTTCTCATCCCGTCACTGCAACAAGTTGACCTAGCCAATAACCACCTGACAGGTGTCGAGATCGCCAGGCCCAGCTCCGGCAGAGGTGGCGAGCTCGTGGCCGTCGACTTGGGCTTCAACAGAATCGAAGGCTACGCGCCCGCGAATTTTGCGGCATTTCCGAGACTGTCGTCGCTGTCGGTTCGTTACAACAGGCTACGTGGCAAGATCCCAGTGGAGTACGGGAAGAACAAGTCGTTGAAGCGGTTGTACTTGGACGGTAACTTTCTAAACGGACAGCCGCCGCCGGCGTTGTTAGCCGGAAGTTCAGGAATCTCCGGCAGCTTGGGGGATAATTGTCTACAGGGGTGTCCAGCTTCAGCTCAGCTGTGCCTTCCGTCGCAGAAATCAAACGCTATATGCAAGCAAGCCTATGGTGGTGGAAGAGGAAGACCAACGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

255

Amino Acids

27.55

Weight (kDa)

9.68

Isoelectric Point (pI)

46.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 63 - 124 3.3e-07 Leucine rich repeat
LRR_8 PF13855 140 - 196 4.8e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014453)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15320
fragaria_vesca FvH4_2g05350
malus_domestica MD05G1087700.v1.1
prunus_persica Prupe.8G133500_v2.0.a1
pyrus_communis pycom05g08720
rosa_chinensis RchiOBHm_Chr6g0255611
rosa_laevigata RLG00000014827
rosa_multiflora Rmu_co8324351.1_g000001 Rmu_sc0010421.1_g000006 Rmu_sc0015454.1_g000005
rosa_roxburghii Rroxscaffold_7G00209850
rosa_rugosa Rorug05G0559700
rosa_samantha Rh6AG078300 Rh6BG070600 Rh6CG069200 Rh6DG066200
rosa_wichuraiana Rw6G006600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 313
AccI GTMKAC 2 cut(s) 429, 664
AccII CGCG 3 cut(s) 221, 461, 467
AciI CCGC 5 cut(s) 465, 476, 568, 605, 608
AclWI GGATC 2 cut(s) 175, 526
AcoI YGGCCR 1 cut(s) 423
AcsI RAATTY 1 cut(s) 469
AcuI CTGAAG 1 cut(s) 666
AfaI GTAC 3 cut(s) 13, 545, 575
AfiI CCNNNNNNNGG 1 cut(s) 401
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 3 cut(s) 211, 442, 565
AhlI ACTAGT 1 cut(s) 8
AjiI CACGTC 1 cut(s) 37
AjnI CCWGG 1 cut(s) 389
AloI GAACNNNNNNTCC 2 cut(s) 284, 316
AluBI AGCT 8 cut(s) 150, 283, 399, 418, 648, 680, 686, 691
AluI AGCT 8 cut(s) 150, 283, 399, 418, 648, 680, 686, 691
Alw21I GWGCWC 3 cut(s) 124, 285, 420
Alw26I GTCTC 2 cut(s) 27, 481
AlwI GGATC 2 cut(s) 175, 526
AoxI GGCC 3 cut(s) 230, 392, 423
ApaI GGGCCC 1 cut(s) 234
ApeKI GCWGC 1 cut(s) 645
ApoI RAATTY 1 cut(s) 469
AspLEI GCGC 3 cut(s) 216, 223, 463
AspS9I GGNCC 4 cut(s) 230, 231, 306, 393
AsuC2I CCSGG 1 cut(s) 304
AsuHPI GGTGA 3 cut(s) 65, 121, 154
AvaII GGWCC 1 cut(s) 306
BaeGI GKGCMC 1 cut(s) 234
BanII GRGCYC 3 cut(s) 234, 285, 420
BarI GAAGNNNNNNTAC 2 cut(s) 557, 589
BauI CACGAG 1 cut(s) 419
BbsI GAAGAC 1 cut(s) 760
Bbv12I GWGCWC 3 cut(s) 124, 285, 420
BbvI GCAGC 1 cut(s) 657
BccI CCATC 1 cut(s) 128
BceAI ACGGC 1 cut(s) 410
BciT130I CCWGG 1 cut(s) 391
BcnI CCSGG 1 cut(s) 304
BcoDI GTCTC 2 cut(s) 27, 481
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 4 cut(s) 9, 117, 197, 356
BfmI CTRYAG 1 cut(s) 665
BisI GCNGC 4 cut(s) 477, 605, 608, 646
BlpI GCTNAGC 2 cut(s) 284, 687
BlsI GCNGC 4 cut(s) 478, 606, 609, 647
Bme1390I CCNGG 2 cut(s) 304, 391
Bme18I GGWCC 1 cut(s) 306
BmgBI CACGTC 1 cut(s) 37
BmgT120I GGNCC 4 cut(s) 230, 231, 306, 393
BmiI GGNNCC 2 cut(s) 232, 307
BmrFI CCNGG 2 cut(s) 304, 391
BmrI ACTGGG 1 cut(s) 530
BmsI GCATC 1 cut(s) 61
BmuI ACTGGG 1 cut(s) 530
BoxI GACNNNNGTC 3 cut(s) 377, 493, 760
BpiI GAAGAC 1 cut(s) 760
Bpu1102I GCTNAGC 2 cut(s) 284, 687
BpuMI CCSGG 1 cut(s) 304
BsaAI YACGTR 1 cut(s) 524
BsaWI WCCGGW 1 cut(s) 164
BsaXI ACNNNNNCTCC 2 cut(s) 284, 314
Bsc4I CCNNNNNNNGG 1 cut(s) 401
Bse118I RCCGGY 1 cut(s) 610
Bse1I ACTGG 1 cut(s) 536
BseBI CCWGG 1 cut(s) 391
BseGI GGATG 2 cut(s) 52, 330
BseLI CCNNNNNNNGG 1 cut(s) 401
BseMII CTCAG 3 cut(s) 160, 298, 701
BseNI ACTGG 1 cut(s) 536
BseSI GKGCMC 1 cut(s) 234
BseXI GCAGC 1 cut(s) 657
BseYI CCCAGC 1 cut(s) 395
Bsh1236I CGCG 3 cut(s) 221, 461, 467
BshFI GGCC 3 cut(s) 232, 394, 425
BsiHKAI GWGCWC 3 cut(s) 124, 285, 420
BsiSI CCGG 6 cut(s) 165, 303, 402, 611, 624, 642
BslFI GGGAC 1 cut(s) 319
BslI CCNNNNNNNGG 1 cut(s) 401
BsmAI GTCTC 2 cut(s) 27, 481
BsmBI CGTCTC 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 319
BsnI GGCC 3 cut(s) 232, 394, 425
Bsp120I GGGCCC 1 cut(s) 230
Bsp1286I GDGCHC 4 cut(s) 124, 234, 285, 420
Bsp143I GATC 5 cut(s) 142, 159, 167, 384, 531
Bsp1720I GCTNAGC 2 cut(s) 284, 687
BspACI CCGC 5 cut(s) 465, 476, 568, 605, 608
BspANI GGCC 3 cut(s) 232, 394, 425
BspCNI CTCAG 3 cut(s) 159, 297, 700
BspFNI CGCG 3 cut(s) 221, 461, 467
BspHI TCATGA 1 cut(s) 81
BspLI GGNNCC 2 cut(s) 232, 307
BspPI GGATC 2 cut(s) 175, 526
BsrFI RCCGGY 1 cut(s) 610
BsrI ACTGG 1 cut(s) 536
BssAI RCCGGY 1 cut(s) 610
BssMI GATC 5 cut(s) 142, 159, 167, 384, 531
BssSI CACGAG 1 cut(s) 419
Bst2BI CACGAG 1 cut(s) 419
Bst2UI CCWGG 1 cut(s) 391
Bst4CI ACNGT 3 cut(s) 315, 492, 584
Bst6I CTCTTC 1 cut(s) 742
BstBAI YACGTR 1 cut(s) 524
BstC8I GCNNGC 6 cut(s) 124, 416, 465, 612, 728, 732
BstDEI CTNAG 3 cut(s) 146, 284, 687
BstF5I GGATG 2 cut(s) 52, 330
BstFNI CGCG 3 cut(s) 221, 461, 467
BstHHI GCGC 3 cut(s) 216, 223, 463
BstKTI GATC 5 cut(s) 145, 162, 170, 387, 534
BstMAI GTCTC 2 cut(s) 27, 481
BstMBI GATC 5 cut(s) 142, 159, 167, 384, 531
BstMWI GCNNNNNNNGC 5 cut(s) 220, 229, 411, 473, 620
BstNI CCWGG 1 cut(s) 391
BstPAI GACNNNNGTC 3 cut(s) 377, 493, 760
BstSCI CCNGG 2 cut(s) 302, 389
BstSFI CTRYAG 1 cut(s) 665
BstSLI GKGCMC 1 cut(s) 234
BstUI CGCG 3 cut(s) 221, 461, 467
BstV1I GCAGC 1 cut(s) 657
BstV2I GAAGAC 1 cut(s) 760
BstX2I RGATCY 1 cut(s) 531
BstXI CCANNNNNNTGG 1 cut(s) 134
BstYI RGATCY 1 cut(s) 531
BsuRI GGCC 3 cut(s) 232, 394, 425
BtrI CACGTC 1 cut(s) 37
BtsCI GGATG 2 cut(s) 52, 330
BtsI GCAGTG 1 cut(s) 338
BtsIMutI CAGTG 2 cut(s) 338, 543
Cac8I GCNNGC 6 cut(s) 124, 416, 465, 612, 728, 732
CciI TCATGA 1 cut(s) 81
CfoI GCGC 3 cut(s) 216, 223, 463
Cfr10I RCCGGY 1 cut(s) 610
Cfr13I GGNCC 4 cut(s) 230, 231, 306, 393
Csp6I GTAC 3 cut(s) 12, 544, 574
CviAII CATG 1 cut(s) 82
CviQI GTAC 3 cut(s) 12, 544, 574
DdeI CTNAG 3 cut(s) 146, 284, 687
DpnI GATC 5 cut(s) 144, 161, 169, 386, 533
DpnII GATC 5 cut(s) 142, 159, 167, 384, 531
DrdI GACNNNNNNGTC 1 cut(s) 313
DseDI GACNNNNNNGTC 1 cut(s) 313
EaeI YGGCCR 1 cut(s) 423
Eam1104I CTCTTC 1 cut(s) 742
EarI CTCTTC 1 cut(s) 742
Ecl136II GAGCTC 2 cut(s) 283, 418
Eco24I GRGCYC 3 cut(s) 234, 285, 420
Eco47I GGWCC 1 cut(s) 306
Eco53kI GAGCTC 2 cut(s) 283, 418
Eco57I CTGAAG 1 cut(s) 666
EcoICRI GAGCTC 2 cut(s) 283, 418
EcoO109I RGGNCCY 2 cut(s) 231, 306
EcoRII CCWGG 1 cut(s) 389
EcoT38I GRGCYC 3 cut(s) 234, 285, 420
Esp3I CGTCTC 1 cut(s) 27
FaeI CATG 1 cut(s) 85
FaiI YATR 5 cut(s) 83, 89, 722, 724, 738
FaqI GGGAC 1 cut(s) 319
FatI CATG 1 cut(s) 81
FauI CCCGC 1 cut(s) 472
FblI GTMKAC 2 cut(s) 429, 664
Fnu4HI GCNGC 4 cut(s) 477, 605, 608, 646
FokI GGATG 2 cut(s) 39, 317
FriOI GRGCYC 3 cut(s) 234, 285, 420
Fsp4HI GCNGC 4 cut(s) 477, 605, 608, 646
FspBI CTAG 4 cut(s) 9, 117, 197, 356
GlaI GCGC 3 cut(s) 215, 222, 462
GluI GCNGC 4 cut(s) 477, 605, 608, 646
GsaI CCCAGC 1 cut(s) 399
HaeIII GGCC 3 cut(s) 232, 394, 425
HapII CCGG 6 cut(s) 165, 303, 402, 611, 624, 642
HhaI GCGC 3 cut(s) 216, 223, 463
Hin1II CATG 1 cut(s) 85
Hin6I GCGC 3 cut(s) 214, 221, 461
HinP1I GCGC 3 cut(s) 214, 221, 461
HincII GTYRAC 2 cut(s) 352, 430
HindII GTYRAC 2 cut(s) 352, 430
HinfI GANTC 5 cut(s) 112, 138, 262, 447, 636
HpaII CCGG 6 cut(s) 165, 303, 402, 611, 624, 642
HphI GGTGA 3 cut(s) 65, 121, 154
Hpy166II GTNNAC 3 cut(s) 352, 430, 665
Hpy188I TCNGA 1 cut(s) 486
Hpy188III TCNNGA 4 cut(s) 82, 382, 633, 765
Hpy8I GTNNAC 3 cut(s) 352, 430, 665
Hpy99I CGWCG 4 cut(s) 257, 431, 499, 706
HpyAV CCTTC 3 cut(s) 67, 446, 707
HpyCH4III ACNGT 3 cut(s) 315, 492, 584
HpyCH4IV ACGT 3 cut(s) 36, 523, 761
HpyCH4V TGCA 2 cut(s) 343, 726
HpyF10VI GCNNNNNNNGC 5 cut(s) 220, 229, 411, 473, 620
HpyF3I CTNAG 3 cut(s) 146, 284, 687
HpySE526I ACGT 3 cut(s) 36, 523, 761
Hsp92II CATG 1 cut(s) 85
HspAI GCGC 3 cut(s) 214, 221, 461
KroI GCCGGC 1 cut(s) 610
KroNI GCCGGC 1 cut(s) 612
Kzo9I GATC 5 cut(s) 142, 159, 167, 384, 531
LmnI GCTCC 1 cut(s) 404
Lsp1109I GCAGC 1 cut(s) 657
LweI GCATC 1 cut(s) 61
MaeI CTAG 4 cut(s) 9, 117, 197, 356
MaeII ACGT 3 cut(s) 36, 523, 761
MaeIII GTNAC 3 cut(s) 336, 509, 584
MalI GATC 5 cut(s) 144, 161, 169, 386, 533
MboI GATC 5 cut(s) 142, 159, 167, 384, 531
MboII GAAGA 3 cut(s) 562, 759, 765
MflI RGATCY 1 cut(s) 531
MhlI GDGCHC 4 cut(s) 124, 234, 285, 420
MluCI AATT 2 cut(s) 469, 658
MlyI GAGTC 1 cut(s) 132
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 3 cut(s) 265, 401, 743
MreI CGCCGGCG 1 cut(s) 610
MroNI GCCGGC 1 cut(s) 610
MspA1I CMGCKG 1 cut(s) 691
MspI CCGG 6 cut(s) 165, 303, 402, 611, 624, 642
MspR9I CCNGG 2 cut(s) 304, 391
MvaI CCWGG 1 cut(s) 391
MvnI CGCG 3 cut(s) 221, 461, 467
MwoI GCNNNNNNNGC 5 cut(s) 220, 229, 411, 473, 620
NaeI GCCGGC 1 cut(s) 612
NciI CCSGG 1 cut(s) 304
NdeII GATC 5 cut(s) 142, 159, 167, 384, 531
NgoMIV GCCGGC 1 cut(s) 610
NlaIII CATG 1 cut(s) 85
NlaIV GGNNCC 2 cut(s) 232, 307
NmuCI GTSAC 1 cut(s) 336
PagI TCATGA 1 cut(s) 81
PcsI WCGNNNNNNNCGW 2 cut(s) 285, 426
PdiI GCCGGC 1 cut(s) 612
PfeI GAWTC 4 cut(s) 112, 262, 447, 636
PfoI TCCNGGA 1 cut(s) 302
PkrI GCNGC 4 cut(s) 478, 606, 609, 647
PleI GAGTC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 132
Ppu21I YACGTR 1 cut(s) 524
PpuMI RGGWCCY 1 cut(s) 306
PshAI GACNNNNGTC 3 cut(s) 377, 493, 760
Psp124BI GAGCTC 2 cut(s) 285, 420
Psp5II RGGWCCY 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 389
PspFI CCCAGC 1 cut(s) 395
PspGI CCWGG 1 cut(s) 389
PspN4I GGNNCC 2 cut(s) 232, 307
PspOMI GGGCCC 1 cut(s) 230
PspPI GGNCC 4 cut(s) 230, 231, 306, 393
PspPPI RGGWCCY 1 cut(s) 306
PsuI RGATCY 1 cut(s) 531
PvuII CAGCTG 1 cut(s) 691
RsaI GTAC 3 cut(s) 13, 545, 575
RsaNI GTAC 3 cut(s) 12, 544, 574
SacI GAGCTC 2 cut(s) 285, 420
SalI GTCGAC 1 cut(s) 428
SatI GCNGC 4 cut(s) 477, 605, 608, 646
Sau3AI GATC 5 cut(s) 142, 159, 167, 384, 531
Sau96I GGNCC 4 cut(s) 230, 231, 306, 393
SchI GAGTC 1 cut(s) 132
ScrFI CCNGG 2 cut(s) 304, 391
SduI GDGCHC 4 cut(s) 124, 234, 285, 420
SfaNI GCATC 1 cut(s) 61
SfcI CTRYAG 1 cut(s) 665
SgrAI CRCCGGYG 1 cut(s) 610
SinI GGWCC 1 cut(s) 306
SpeI ACTAGT 1 cut(s) 8
Sse9I AATT 2 cut(s) 469, 658
SsiI CCGC 5 cut(s) 465, 476, 568, 605, 608
SspMI CTAG 4 cut(s) 9, 117, 197, 356
SstI GAGCTC 2 cut(s) 285, 420
StyD4I CCNGG 2 cut(s) 302, 389
TaaI ACNGT 3 cut(s) 315, 492, 584
TaiI ACGT 3 cut(s) 39, 526, 764
TaqI TCGA 7 cut(s) 141, 239, 252, 279, 381, 429, 450
TasI AATT 2 cut(s) 469, 658
TatI WGTACW 1 cut(s) 573
TauI GCSGC 3 cut(s) 479, 607, 610
TfiI GAWTC 4 cut(s) 112, 262, 447, 636
TscAI CASTG 2 cut(s) 345, 543
TseFI GTSAC 1 cut(s) 336
TseI GCWGC 1 cut(s) 645
Tsp45I GTSAC 1 cut(s) 336
TspDTI ATGAA 2 cut(s) 17, 98
TspGWI ACGGA 3 cut(s) 45, 612, 690
TspRI CASTG 2 cut(s) 345, 543
VpaK11BI GGWCC 1 cut(s) 306
XapI RAATTY 1 cut(s) 469
XmiI GTMKAC 2 cut(s) 429, 664
XspI CTAG 4 cut(s) 9, 117, 197, 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.