AT2G15560

OST-HTH/LOTUS domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013466
Physical Location & Seq
Reverse (-)
6787866 .. 6790215
2350 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G15560.2

Sequence Viewer

Length: 1470 bp
ATGATACAAAACGCTATGTCAAGTTATTATAATCCATCAGCAGCAACAACTTTAGTCTCTATTGATTCCGATGAACAAAGAAGAATCAAATACCTAGCGGATTTAAACATGATTGCAACACAAAGACATTCTTCTACAGATGGTCCTATGGCCATTCTCTGGGATATGGAGAATTGTCCCGTTCCTAGCGATGTACGTCCTGAAGATGTAGCTAGTAACATAAGAATGGCTATTCAGTTACATCCTGTGATATCCGGTCCCGTTGTTAACTTCTCGGCTTACGGGGATTTCAATGGTTTCCCTCGTCGGGTTCGAGAAGGTTGTCAAAGAACCGGTGTGAAGCTTATTGATGTACCAAATGGTAGGAAAGATGCGTCGGATAAAGCGATTTTGATTGATATGTTCTTGTTTGTGCTTGATAATAAGCCGCCTGCGACTATCGTTCTCGTATCGGGTGATGTTGATTTCGCGCCTGCGCTTCATATATTGGGTCAGCGTGGGTATACTGTGATTCTTGTTATACCTTCTAGTGTGTATGTGAATTCAGCTTTGTCTAATGCTGGTAAGTTTGTTTGGGATTGGCATAGTATTGTTCACGGTGAAGGCTTTGTGCCGCGATGTAAACCTCGTGTTGTTCCGTATCTTATGGGGTGTAATATTGGTGATAACAGTAACATGGATGGTTTGAATGAAGATGAAACTATTCTCTATAGAGGTAACTGTTATAGTAGTGATCCAAGAGAGTCTTCTTCCTTGATGGTTTCGCAGTTTCGTAATGAGTATAGTAGCGGTGTAATGTCGTGTTGGCCATCTAATTCAGGCGAGTCTATGGCATGTCCTCCTTCAGGTCACCTTGAGTCCACCATGTGGGTAGCGCCGGGAGATTTAAACGGTTTGAAGGGGCAGCTCGTGAAGCTGCTAGAGCTTTCAGGTGGATGTATTCCTCTTATGCGTGTTCCTTCTGAATACCAACGGAAATTCAGTAAACCGCTTTTTGTATCGGATTATGGGGTGGCCAAGCTTGTGGATCTGTTCAAAAAGATGAGTGATGTGATTGTAGTTGATGGTAAAGGCAACAAGAGATTTGTTTACCTGCGCAACTCGAAACCGAACATTATCTCTCCTTCTTCCCCTGTGGTTCTACTGAGAAGAGAGAGGAAAGGAAAAGAGCCTAACGGGGTAACTACCAATGGAGGAGTCTCCTCTGATGAAATGTCAGACACAGGCTCGGTTCAGAGCGAGAGGAACCTAGAAGAGTTCAAATTCGAGCTACAAGACATTTTGGTGAGCTATTGTTGTCAGGTACAGATGGATTGTTTCGAAGCGATATACAAGCTAAGGTACAAAAGGCCATTGGCCTACACAAATATGGGCGTGAATCACTTGGAGCAGCTCTTTGACAAGTTAAGGGATGTTGTTGCCATACATGAAGATCCTGCTACAGGGAGGAAACTCATCAGCCCGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN OST-HTH

Protein Analysis

489

Amino Acids

54.26

Weight (kDa)

6.28

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NYN PF01936 50 - 187 1.9e-27 NYN domain
OST-HTH PF12872 252 - 319 7e-12 OST-HTH/LOTUS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013466)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15560 AT2G15560
fragaria_vesca FvH4_2g05850 FvH4_2g05850
malus_domestica MD05G1082600.v1.1
prunus_persica Prupe.8G127000_v2.0.a1 Prupe.8G127000_v2.0.a1 Prupe.8G127000_v2.0.a1
pyrus_communis pycom05g07760
rosa_chinensis RchiOBHm_Chr6g0257731
rosa_laevigata RLG00000014719
rosa_multiflora Rmu_sc0011315.1_g000007
rosa_roxburghii Rroxscaffold_7G00208910
rosa_samantha Rh6AG085400 Rh6BG079700 Rh6CG074700 Rh6DG071600
rosa_wichuraiana Rw6G007670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 30
Acc16I TGCGCA 1 cut(s) 1097
Acc36I ACCTGC 1 cut(s) 1101
AccB7I CCANNNNNTGG 2 cut(s) 159, 867
AccI GTMKAC 1 cut(s) 503
AccII CGCG 2 cut(s) 470, 616
AciI CCGC 5 cut(s) 98, 428, 614, 789, 989
AclWI GGATC 3 cut(s) 728, 1035, 1427
AcoI YGGCCR 3 cut(s) 150, 806, 1014
AcsI RAATTY 3 cut(s) 541, 977, 1262
AcuI CTGAAG 2 cut(s) 222, 828
AdeI CACNNNGTG 1 cut(s) 867
AfaI GTAC 4 cut(s) 195, 354, 1305, 1343
AfiI CCNNNNNNNGG 5 cut(s) 159, 307, 845, 867, 1442
AgeI ACCGGT 1 cut(s) 332
AgsI TTSAA 5 cut(s) 292, 688, 898, 1036, 1261
AjuI GAANNNNNNNTTGG 2 cut(s) 730, 762
Alw26I GTCTC 2 cut(s) 61, 1204
AlwI GGATC 3 cut(s) 728, 1035, 1427
AoxI GGCC 5 cut(s) 150, 806, 1014, 1349, 1356
ApeKI GCWGC 4 cut(s) 41, 904, 916, 1390
ApoI RAATTY 3 cut(s) 541, 977, 1262
AsiGI ACCGGT 1 cut(s) 332
Asp700I GAANNNNTTC 1 cut(s) 702
AspLEI GCGC 4 cut(s) 472, 478, 877, 1098
AspS9I GGNCC 2 cut(s) 143, 257
AsuC2I CCSGG 2 cut(s) 879, 1463
AsuHPI GGTGA 5 cut(s) 467, 611, 674, 842, 1297
AsuII TTCGAA 1 cut(s) 1320
AvaII GGWCC 2 cut(s) 143, 257
BalI TGGCCA 3 cut(s) 152, 808, 1016
BauI CACGAG 2 cut(s) 627, 908
BbsI GAAGAC 1 cut(s) 738
BbvI GCAGC 4 cut(s) 53, 903, 916, 1402
BccI CCATC 7 cut(s) 43, 134, 674, 751, 817, 1058, 1303
BcnI CCSGG 2 cut(s) 879, 1463
BcoDI GTCTC 2 cut(s) 61, 1204
BfaI CTAG 6 cut(s) 95, 186, 213, 528, 920, 1250
BfmI CTRYAG 3 cut(s) 135, 709, 1440
BfoI RGCGCY 1 cut(s) 878
BfuAI ACCTGC 1 cut(s) 1101
BisI GCNGC 6 cut(s) 42, 428, 614, 905, 917, 1391
BlsI GCNGC 6 cut(s) 43, 429, 615, 906, 918, 1392
Bme1390I CCNGG 2 cut(s) 879, 1463
Bme18I GGWCC 2 cut(s) 143, 257
BmgT120I GGNCC 2 cut(s) 143, 257
BmiI GGNNCC 2 cut(s) 259, 1247
BmrFI CCNGG 2 cut(s) 879, 1463
BmsI GCATC 1 cut(s) 361
BpiI GAAGAC 1 cut(s) 738
Bpu10I CCTNAGC 1 cut(s) 1337
Bpu14I TTCGAA 1 cut(s) 1320
BpuEI CTTGAG 1 cut(s) 875
BpuMI CCSGG 2 cut(s) 879, 1463
BsaWI WCCGGW 2 cut(s) 254, 332
Bsc4I CCNNNNNNNGG 5 cut(s) 159, 307, 845, 867, 1442
Bse118I RCCGGY 1 cut(s) 332
BseGI GGATG 4 cut(s) 241, 685, 941, 1417
BseLI CCNNNNNNNGG 5 cut(s) 159, 307, 845, 867, 1442
BseMII CTCAG 1 cut(s) 1136
BseRI GAGGAG 2 cut(s) 1192, 1209
BseXI GCAGC 4 cut(s) 53, 903, 916, 1402
Bsh1236I CGCG 2 cut(s) 470, 616
BshFI GGCC 5 cut(s) 152, 808, 1016, 1351, 1358
BshTI ACCGGT 1 cut(s) 332
BsiSI CCGG 4 cut(s) 255, 333, 878, 1463
BslFI GGGAC 2 cut(s) 162, 243
BslI CCNNNNNNNGG 5 cut(s) 159, 307, 845, 867, 1442
BsmAI GTCTC 2 cut(s) 61, 1204
BsmFI GGGAC 2 cut(s) 162, 243
BsnI GGCC 5 cut(s) 152, 808, 1016, 1351, 1358
Bsp119I TTCGAA 1 cut(s) 1320
Bsp143I GATC 3 cut(s) 733, 1027, 1432
BspACI CCGC 5 cut(s) 98, 428, 614, 789, 989
BspANI GGCC 5 cut(s) 152, 808, 1016, 1351, 1358
BspCNI CTCAG 1 cut(s) 1137
BspFNI CGCG 2 cut(s) 470, 616
BspLI GGNNCC 2 cut(s) 259, 1247
BspMI ACCTGC 1 cut(s) 1101
BspPI GGATC 3 cut(s) 728, 1035, 1427
BspT104I TTCGAA 1 cut(s) 1320
BsrFI RCCGGY 1 cut(s) 332
BssAI RCCGGY 1 cut(s) 332
BssMI GATC 3 cut(s) 733, 1027, 1432
BssNAI GTATAC 1 cut(s) 504
BssSI CACGAG 2 cut(s) 627, 908
Bst1107I GTATAC 1 cut(s) 504
Bst2BI CACGAG 2 cut(s) 627, 908
Bst4CI ACNGT 5 cut(s) 508, 599, 671, 722, 893
Bst6I CTCTTC 2 cut(s) 1144, 1248
BstBI TTCGAA 1 cut(s) 1320
BstC8I GCNNGC 2 cut(s) 432, 474
BstDEI CTNAG 2 cut(s) 1145, 1337
BstEII GGTNACC 1 cut(s) 848
BstENI CCTNNNNNAGG 2 cut(s) 843, 1440
BstF5I GGATG 4 cut(s) 241, 685, 941, 1417
BstFNI CGCG 2 cut(s) 470, 616
BstH2I RGCGCY 1 cut(s) 878
BstHHI GCGC 4 cut(s) 472, 478, 877, 1098
BstKTI GATC 3 cut(s) 736, 1030, 1435
BstMAI GTCTC 2 cut(s) 61, 1204
BstMBI GATC 3 cut(s) 733, 1027, 1432
BstMWI GCNNNNNNNGC 2 cut(s) 913, 922
BstNSI RCATGY 1 cut(s) 837
BstPI GGTNACC 1 cut(s) 848
BstSCI CCNGG 2 cut(s) 877, 1461
BstSFI CTRYAG 3 cut(s) 135, 709, 1440
BstUI CGCG 2 cut(s) 470, 616
BstV1I GCAGC 4 cut(s) 53, 903, 916, 1402
BstV2I GAAGAC 1 cut(s) 738
BstX2I RGATCY 2 cut(s) 1027, 1432
BstXI CCANNNNNNTGG 1 cut(s) 1024
BstYI RGATCY 2 cut(s) 1027, 1432
BstZ17I GTATAC 1 cut(s) 504
BsuRI GGCC 5 cut(s) 152, 808, 1016, 1351, 1358
BtgZI GCGATG 2 cut(s) 204, 631
BtsCI GGATG 4 cut(s) 241, 685, 941, 1417
BveI ACCTGC 1 cut(s) 1101
Cac8I GCNNGC 2 cut(s) 432, 474
CfoI GCGC 4 cut(s) 472, 478, 877, 1098
Cfr10I RCCGGY 1 cut(s) 332
Cfr13I GGNCC 2 cut(s) 143, 257
CseI GACGC 1 cut(s) 363
Csp6I GTAC 4 cut(s) 194, 353, 1304, 1342
CspAI ACCGGT 1 cut(s) 332
CviAII CATG 5 cut(s) 109, 676, 834, 865, 1427
CviQI GTAC 4 cut(s) 194, 353, 1304, 1342
DdeI CTNAG 2 cut(s) 1145, 1337
DpnI GATC 3 cut(s) 735, 1029, 1434
DpnII GATC 3 cut(s) 733, 1027, 1432
DraI TTTAAA 2 cut(s) 105, 888
DraIII CACNNNGTG 1 cut(s) 867
EaeI YGGCCR 3 cut(s) 150, 806, 1014
Eam1104I CTCTTC 2 cut(s) 1144, 1248
EarI CTCTTC 2 cut(s) 1144, 1248
Eco32I GATATC 1 cut(s) 252
Eco47I GGWCC 2 cut(s) 143, 257
Eco57I CTGAAG 2 cut(s) 222, 828
Eco91I GGTNACC 1 cut(s) 848
EcoNI CCTNNNNNAGG 2 cut(s) 843, 1440
EcoO65I GGTNACC 1 cut(s) 848
EcoRI GAATTC 1 cut(s) 541
EcoRV GATATC 1 cut(s) 252
FaeI CATG 5 cut(s) 112, 679, 837, 868, 1430
FalI AAGNNNNNCTT 4 cut(s) 115, 147, 730, 762
FaqI GGGAC 2 cut(s) 162, 243
FatI CATG 5 cut(s) 108, 675, 833, 864, 1426
FblI GTMKAC 1 cut(s) 503
Fnu4HI GCNGC 6 cut(s) 42, 428, 614, 905, 917, 1391
FokI GGATG 4 cut(s) 228, 692, 948, 1424
Fsp4HI GCNGC 6 cut(s) 42, 428, 614, 905, 917, 1391
FspBI CTAG 6 cut(s) 95, 186, 213, 528, 920, 1250
FspI TGCGCA 1 cut(s) 1097
GlaI GCGC 4 cut(s) 471, 477, 876, 1097
GluI GCNGC 6 cut(s) 42, 428, 614, 905, 917, 1391
HaeII RGCGCY 1 cut(s) 878
HaeIII GGCC 5 cut(s) 152, 808, 1016, 1351, 1358
HapII CCGG 4 cut(s) 255, 333, 878, 1463
HgaI GACGC 1 cut(s) 363
HhaI GCGC 4 cut(s) 472, 478, 877, 1098
Hin1II CATG 5 cut(s) 112, 679, 837, 868, 1430
Hin6I GCGC 4 cut(s) 470, 476, 875, 1096
HinP1I GCGC 4 cut(s) 470, 476, 875, 1096
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HindIII AAGCTT 2 cut(s) 341, 1019
HinfI GANTC 8 cut(s) 65, 84, 511, 743, 824, 857, 1197, 1378
HpaI GTTAAC 1 cut(s) 268
HpaII CCGG 4 cut(s) 255, 333, 878, 1463
HphI GGTGA 5 cut(s) 467, 611, 674, 842, 1297
Hpy166II GTNNAC 7 cut(s) 268, 504, 595, 623, 861, 986, 1090
Hpy188I TCNGA 7 cut(s) 70, 379, 964, 1003, 1207, 1219, 1236
Hpy188III TCNNGA 3 cut(s) 200, 314, 910
Hpy8I GTNNAC 7 cut(s) 268, 504, 595, 623, 861, 986, 1090
Hpy99I CGWCG 2 cut(s) 309, 379
HpyAV CCTTC 7 cut(s) 311, 534, 596, 852, 892, 969, 1134
HpyCH4III ACNGT 5 cut(s) 508, 599, 671, 722, 893
HpyCH4IV ACGT 1 cut(s) 196
HpyCH4V TGCA 1 cut(s) 116
HpyF10VI GCNNNNNNNGC 2 cut(s) 913, 922
HpyF3I CTNAG 2 cut(s) 1145, 1337
HpySE526I ACGT 1 cut(s) 196
Hsp92II CATG 5 cut(s) 112, 679, 837, 868, 1430
HspAI GCGC 4 cut(s) 470, 476, 875, 1096
KspAI GTTAAC 1 cut(s) 268
Kzo9I GATC 3 cut(s) 733, 1027, 1432
LmnI GCTCC 1 cut(s) 1387
Lsp1109I GCAGC 4 cut(s) 53, 903, 916, 1402
LweI GCATC 1 cut(s) 361
MaeI CTAG 6 cut(s) 95, 186, 213, 528, 920, 1250
MaeII ACGT 1 cut(s) 196
MaeIII GTNAC 6 cut(s) 215, 237, 671, 716, 848, 1180
MalI GATC 3 cut(s) 735, 1029, 1434
MboI GATC 3 cut(s) 733, 1027, 1432
MflI RGATCY 2 cut(s) 1027, 1432
MlsI TGGCCA 3 cut(s) 152, 808, 1016
MluCI AATT 5 cut(s) 172, 541, 814, 977, 1262
MluNI TGGCCA 3 cut(s) 152, 808, 1016
MlyI GAGTC 4 cut(s) 752, 833, 866, 1206
MmeI TCCRAC 1 cut(s) 357
Mox20I TGGCCA 3 cut(s) 152, 808, 1016
MroXI GAANNNNTTC 1 cut(s) 702
MscI TGGCCA 3 cut(s) 152, 808, 1016
MseI TTAA 5 cut(s) 104, 267, 887, 1406, 1468
MslI CAYNNNNRTG 3 cut(s) 224, 1283, 1367
Msp20I TGGCCA 3 cut(s) 152, 808, 1016
MspI CCGG 4 cut(s) 255, 333, 878, 1463
MspR9I CCNGG 2 cut(s) 879, 1463
MvnI CGCG 2 cut(s) 470, 616
MwoI GCNNNNNNNGC 2 cut(s) 913, 922
NciI CCSGG 2 cut(s) 879, 1463
NdeII GATC 3 cut(s) 733, 1027, 1432
NlaIII CATG 5 cut(s) 112, 679, 837, 868, 1430
NlaIV GGNNCC 2 cut(s) 259, 1247
NmeAIII GCCGAG 1 cut(s) 254
NmuCI GTSAC 1 cut(s) 848
NsbI TGCGCA 1 cut(s) 1097
NspI RCATGY 1 cut(s) 837
NspV TTCGAA 1 cut(s) 1320
PcsI WCGNNNNNNNCGW 2 cut(s) 310, 383
PdmI GAANNNNTTC 1 cut(s) 702
PfeI GAWTC 4 cut(s) 65, 84, 511, 1378
PflMI CCANNNNNTGG 2 cut(s) 159, 867
PinAI ACCGGT 1 cut(s) 332
PkrI GCNGC 6 cut(s) 43, 429, 615, 906, 918, 1392
PleI GAGTC 4 cut(s) 751, 832, 865, 1205
PpsI GAGTC 4 cut(s) 751, 832, 865, 1205
PsiI TTATAA 1 cut(s) 30
PspEI GGTNACC 1 cut(s) 848
PspN4I GGNNCC 2 cut(s) 259, 1247
PspPI GGNCC 2 cut(s) 143, 257
PsuI RGATCY 2 cut(s) 1027, 1432
RsaI GTAC 4 cut(s) 195, 354, 1305, 1343
RsaNI GTAC 4 cut(s) 194, 353, 1304, 1342
RseI CAYNNNNRTG 3 cut(s) 224, 1283, 1367
SaqAI TTAA 5 cut(s) 104, 267, 887, 1406, 1468
SatI GCNGC 6 cut(s) 42, 428, 614, 905, 917, 1391
Sau3AI GATC 3 cut(s) 733, 1027, 1432
Sau96I GGNCC 2 cut(s) 143, 257
SchI GAGTC 4 cut(s) 752, 833, 866, 1206
ScrFI CCNGG 2 cut(s) 879, 1463
SfaNI GCATC 1 cut(s) 361
SfcI CTRYAG 3 cut(s) 135, 709, 1440
SfuI TTCGAA 1 cut(s) 1320
SinI GGWCC 2 cut(s) 143, 257
SmiMI CAYNNNNRTG 3 cut(s) 224, 1283, 1367
SmlI CTYRAG 1 cut(s) 854
SmoI CTYRAG 1 cut(s) 854
Sse9I AATT 5 cut(s) 172, 541, 814, 977, 1262
SsiI CCGC 5 cut(s) 98, 428, 614, 789, 989
SspI AATATT 1 cut(s) 658
SspMI CTAG 6 cut(s) 95, 186, 213, 528, 920, 1250
StyD4I CCNGG 2 cut(s) 877, 1461
TaaI ACNGT 5 cut(s) 508, 599, 671, 722, 893
TaiI ACGT 1 cut(s) 199
TaqI TCGA 4 cut(s) 313, 1103, 1266, 1320
TasI AATT 5 cut(s) 172, 541, 814, 977, 1262
TauI GCSGC 2 cut(s) 430, 616
TfiI GAWTC 4 cut(s) 65, 84, 511, 1378
Tru1I TTAA 5 cut(s) 104, 267, 887, 1406, 1468
Tru9I TTAA 5 cut(s) 104, 267, 887, 1406, 1468
TseFI GTSAC 1 cut(s) 848
TseI GCWGC 4 cut(s) 41, 904, 916, 1390
Tsp45I GTSAC 1 cut(s) 848
TspDTI ATGAA 6 cut(s) 87, 470, 705, 711, 1224, 1443
TspGWI ACGGA 2 cut(s) 627, 988
Van91I CCANNNNNTGG 2 cut(s) 159, 867
VpaK11BI GGWCC 2 cut(s) 143, 257
XagI CCTNNNNNAGG 2 cut(s) 843, 1440
XapI RAATTY 3 cut(s) 541, 977, 1262
XceI RCATGY 1 cut(s) 837
XmiI GTMKAC 1 cut(s) 503
XmnI GAANNNNTTC 1 cut(s) 702
XspI CTAG 6 cut(s) 95, 186, 213, 528, 920, 1250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.