Rroxscaffold_7G00208910

NYN domain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
59055671 .. 59061205
5535 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00208910.1

Sequence Viewer

Length: 1590 bp
ATGGCTTGCCAAAATACCTTGACATCAATAGTGCCTTCAGAACCGTCCGAGCAAAGGGGATCTTATATGCTAGATGCAAACACGAACGCACTTCAAGCTCCAATGAACCAGCCAACCCGAAGCTTCTGTGAAGGTCCTGTGGCTATCCTTTGGGATATTGAAAACTGCCCTGTCCCAAGTGATGTTCGTCCTGAAGATGTAGCTGGTAACATAAGAATGGCTTTGCAGGTACATCCTGTAATTAAAGGAGCTGTTGTTACGTTTGCTGCGTATGGGGACTTTAATGCCTTCCCTAGGCGGCTCCGCGAGGGATGTCAGAGAACTGGTGTTAAACTCGTTGATGTTCCAAATGGAAGAAAGGATGCTGCTGACAAGGCCATCTTGGTTGATATGTTCTTGTTTGCCCTTGACAATCCTCCACCATCTTCCATCATGCTGATATCTGGGGATGTTGATTTTGCTCCAGCGCTCCATATACTTGGGCAACGTGGGTACACAGTGATTCTAGTAATACCTTCTGGAGTGGGTGTTTCATCTGCTCTCAGCAATGCAGGAAAGTTTGTGTGGGACTGGCCTAGTGTGGCTCGTGGGGAAGGCTTTGTGCCTACAACCAAGTTTCAAATGCATCCTCGTGGAGGACAGGCTGATATTGCTGGCTATTTCATGGGTTGCCATATTAATGATCATATGGATGAAGAAGAAGCTATTTTATACAGGGGGATCTCACAAAGCTATTACAATTCAAGAGACTTTTCAATAGTGTCACAATCTTTATCTGAATATAACAGTAGTTCCTTAATGATGCCTGGCGGTCCTGCTGCCTTGAGGTCACACAGTCTCCCATCGGGTCTCAATGAAGTTCCTGCTGGACCTATTGTTTCCACTGATCAGAATGAATCTACTTGGTGGGTTCAACCAGGGGACCTAAATGGTCTGAGGGCACAGCTTGAAAAGTTACTTGAACTTTCTGGAGGTTGCATGCCTCTTACTCGAGTTCCTTGCGAGTATCAGAAAGCTTTTGGAAGACCTCTCTATGTATCAGAGTATGGTGCATTTAAGCTTGTTAATCTGTTTAAGAAGTTGGGTGACACAATGGTGGTGGATGGTAAAGGGCATAAGAAATTTGTTTACCTCCGAAACTGGAAAACAGGCCCTAGTGCCCCACCTTTGATTTCAACTGGGAAGGATAATAGTAGGAAAGGGAAGGGGACTCAGGAAGAGAGTATGGCTATTATTGCAGGTAATGGCTCATCAGATGAGTTCTCAGAGGAGGAAAGAGTAGTTGTAGAAGAACATGATGACAGGAGTCAAGGACAGACCAACATGAGAACAGCAGGTAACTGTGAAACTGATGACCATAACCTAGAGCACTTCAAATATGAGTTGCAGGAGATTCTTGTTAGCTACTCTTGTCGGATTTTTTTGGGTTGTTTTGAGGCGATCTACCAGCAAAGGTACAAAAAGCCCTTGGACTGTCAAAAGTTTGGTGTTGATCAACTGGAGGAGCTGTTTAAGAAGGTGACTGATGTGGTGGTGTTACTTGAAGAGCCTGTTAGCAAGAGGAAGTTCCTGGCTGCAAGCGGTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

529

Amino Acids

58.21

Weight (kDa)

5.45

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NYN PF01936 47 - 184 4.4e-27 NYN domain
OST-HTH PF12872 310 - 376 6.5e-08 OST-HTH/LOTUS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013466)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 217, 1229, 1325
AccII CGCG 1 cut(s) 306
AciI CCGC 4 cut(s) 298, 304, 810, 1581
AclWI GGATC 2 cut(s) 67, 728
AcsI RAATTY 1 cut(s) 1121
AcuI CTGAAG 2 cut(s) 21, 213
AfaI GTAC 3 cut(s) 231, 494, 1457
AfeI AGCGCT 1 cut(s) 468
AfiI CCNNNNNNNGG 3 cut(s) 54, 294, 635
AjnI CCWGG 3 cut(s) 805, 916, 1569
AleI CACNNNNGTG 1 cut(s) 1094
Alw21I GWGCWC 1 cut(s) 1371
Alw26I GTCTC 3 cut(s) 741, 842, 854
AlwI GGATC 2 cut(s) 67, 728
Ama87I CYCGRG 1 cut(s) 990
Aor51HI AGCGCT 1 cut(s) 468
AoxI GGCC 3 cut(s) 375, 572, 1150
ApeKI GCWGC 4 cut(s) 266, 365, 818, 1574
ApoI RAATTY 1 cut(s) 1121
AseI ATTAAT 1 cut(s) 678
AspA2I CCTAGG 1 cut(s) 293
AspLEI GCGC 1 cut(s) 469
AspS9I GGNCC 5 cut(s) 134, 812, 869, 922, 1151
AsuHPI GGTGA 2 cut(s) 1097, 1531
AvaI CYCGRG 1 cut(s) 990
AvaII GGWCC 4 cut(s) 134, 812, 869, 922
AvrII CCTAGG 1 cut(s) 293
BaeGI GKGCMC 2 cut(s) 943, 1162
BauI CACGAG 2 cut(s) 585, 630
BbsI GAAGAC 1 cut(s) 1030
Bbv12I GWGCWC 1 cut(s) 1371
BbvI GCAGC 4 cut(s) 253, 352, 805, 1561
BccI CCATC 5 cut(s) 386, 430, 437, 850, 1097
BcgI CGANNNNNNTGC 2 cut(s) 981, 1015
BciT130I CCWGG 3 cut(s) 807, 918, 1571
BclI TGATCA 3 cut(s) 682, 886, 1492
BcoDI GTCTC 3 cut(s) 741, 842, 854
BfaI CTAG 6 cut(s) 71, 294, 506, 576, 1155, 1364
BfoI RGCGCY 1 cut(s) 470
BfuAI ACCTGC 3 cut(s) 217, 1229, 1325
BisI GCNGC 5 cut(s) 267, 299, 366, 819, 1575
BlnI CCTAGG 1 cut(s) 293
BlsI GCNGC 5 cut(s) 268, 300, 367, 820, 1576
Bme1390I CCNGG 3 cut(s) 807, 918, 1571
Bme18I GGWCC 4 cut(s) 134, 812, 869, 922
BmeT110I CYCGRG 1 cut(s) 990
BmgT120I GGNCC 5 cut(s) 134, 812, 869, 922, 1151
BmiI GGNNCC 2 cut(s) 302, 923
BmrFI CCNGG 3 cut(s) 807, 918, 1571
BmrI ACTGGG 1 cut(s) 1188
BmsI GCATC 4 cut(s) 64, 352, 634, 792
BmuI ACTGGG 1 cut(s) 1188
BoxI GACNNNNGTC 1 cut(s) 1305
BpiI GAAGAC 1 cut(s) 1030
BpmI CTGGAG 4 cut(s) 447, 540, 990, 1520
BpuEI CTTGAG 1 cut(s) 844
BsaI GGTCTC 1 cut(s) 854
BsaJI CCNNGG 3 cut(s) 293, 917, 1467
BsaXI ACNNNNNCTCC 8 cut(s) 240, 270, 513, 543, 822, 852, 1493, 1523
Bsc4I CCNNNNNNNGG 3 cut(s) 54, 294, 635
Bse1I ACTGG 5 cut(s) 328, 575, 1145, 1183, 1503
Bse3DI GCAATG 1 cut(s) 553
BseBI CCWGG 3 cut(s) 807, 918, 1571
BseDI CCNNGG 3 cut(s) 293, 917, 1467
BseGI GGATG 7 cut(s) 232, 317, 367, 454, 625, 697, 1108
BseLI CCNNNNNNNGG 3 cut(s) 54, 294, 635
BseMI GCAATG 1 cut(s) 553
BseMII CTCAG 4 cut(s) 556, 926, 1226, 1278
BseNI ACTGG 5 cut(s) 328, 575, 1145, 1183, 1503
BseRI GAGGAG 2 cut(s) 1283, 1517
BseSI GKGCMC 2 cut(s) 943, 1162
BseXI GCAGC 4 cut(s) 253, 352, 805, 1561
Bsh1236I CGCG 1 cut(s) 306
BshFI GGCC 3 cut(s) 377, 574, 1152
BsiHKAI GWGCWC 1 cut(s) 1371
BsiHKCI CYCGRG 1 cut(s) 990
BslFI GGGAC 5 cut(s) 158, 290, 581, 935, 1222
BslI CCNNNNNNNGG 3 cut(s) 54, 294, 635
BsmAI GTCTC 3 cut(s) 741, 842, 854
BsmFI GGGAC 5 cut(s) 158, 290, 581, 935, 1222
BsnI GGCC 3 cut(s) 377, 574, 1152
Bso31I GGTCTC 1 cut(s) 854
BsoBI CYCGRG 1 cut(s) 990
Bsp1286I GDGCHC 3 cut(s) 943, 1162, 1371
Bsp143I GATC 6 cut(s) 59, 682, 720, 886, 1440, 1492
BspACI CCGC 4 cut(s) 298, 304, 810, 1581
BspANI GGCC 3 cut(s) 377, 574, 1152
BspCNI CTCAG 4 cut(s) 555, 927, 1225, 1277
BspFNI CGCG 1 cut(s) 306
BspLI GGNNCC 2 cut(s) 302, 923
BspMI ACCTGC 3 cut(s) 217, 1229, 1325
BspPI GGATC 2 cut(s) 67, 728
BspQI GCTCTTC 1 cut(s) 1539
BspTNI GGTCTC 1 cut(s) 854
BsrDI GCAATG 1 cut(s) 553
BsrI ACTGG 5 cut(s) 328, 575, 1145, 1183, 1503
BssECI CCNNGG 3 cut(s) 293, 917, 1467
BssMI GATC 6 cut(s) 59, 682, 720, 886, 1440, 1492
BssSI CACGAG 2 cut(s) 585, 630
BssT1I CCWWGG 2 cut(s) 293, 1467
Bst2BI CACGAG 2 cut(s) 585, 630
Bst2UI CCWGG 3 cut(s) 807, 918, 1571
Bst4CI ACNGT 6 cut(s) 45, 499, 788, 836, 1343, 1475
Bst6I CTCTTC 2 cut(s) 1212, 1539
BstC8I GCNNGC 4 cut(s) 7, 655, 980, 1579
BstDEI CTNAG 4 cut(s) 542, 935, 1212, 1264
BstENI CCTNNNNNAGG 2 cut(s) 292, 633
BstF5I GGATG 7 cut(s) 232, 317, 367, 454, 625, 697, 1108
BstFNI CGCG 1 cut(s) 306
BstH2I RGCGCY 1 cut(s) 470
BstHHI GCGC 1 cut(s) 469
BstKTI GATC 6 cut(s) 62, 685, 723, 889, 1443, 1495
BstMAI GTCTC 3 cut(s) 741, 842, 854
BstMBI GATC 6 cut(s) 59, 682, 720, 886, 1440, 1492
BstMWI GCNNNNNNNGC 4 cut(s) 95, 374, 650, 1235
BstNI CCWGG 3 cut(s) 807, 918, 1571
BstNSI RCATGY 1 cut(s) 982
BstPAI GACNNNNGTC 1 cut(s) 1305
BstSCI CCNGG 3 cut(s) 805, 916, 1569
BstSLI GKGCMC 2 cut(s) 943, 1162
BstUI CGCG 1 cut(s) 306
BstV1I GCAGC 4 cut(s) 253, 352, 805, 1561
BstV2I GAAGAC 1 cut(s) 1030
BstX2I RGATCY 2 cut(s) 59, 720
BstXI CCANNNNNNTGG 1 cut(s) 479
BstYI RGATCY 2 cut(s) 59, 720
BsuRI GGCC 3 cut(s) 377, 574, 1152
BtsCI GGATG 7 cut(s) 232, 317, 367, 454, 625, 697, 1108
BtsIMutI CAGTG 2 cut(s) 504, 882
BveI ACCTGC 3 cut(s) 217, 1229, 1325
Cac8I GCNNGC 4 cut(s) 7, 655, 980, 1579
CfoI GCGC 1 cut(s) 469
Cfr13I GGNCC 5 cut(s) 134, 812, 869, 922, 1151
Csp6I GTAC 3 cut(s) 230, 493, 1456
CspCI CAANNNNNGTGG 2 cut(s) 1080, 1115
CviAII CATG 5 cut(s) 433, 664, 979, 1295, 1324
CviQI GTAC 3 cut(s) 230, 493, 1456
DdeI CTNAG 4 cut(s) 542, 935, 1212, 1264
DpnI GATC 6 cut(s) 61, 684, 722, 888, 1442, 1494
DpnII GATC 6 cut(s) 59, 682, 720, 886, 1440, 1492
Eam1104I CTCTTC 2 cut(s) 1212, 1539
EarI CTCTTC 2 cut(s) 1212, 1539
Eco130I CCWWGG 2 cut(s) 293, 1467
Eco31I GGTCTC 1 cut(s) 854
Eco32I GATATC 1 cut(s) 441
Eco47I GGWCC 4 cut(s) 134, 812, 869, 922
Eco47III AGCGCT 1 cut(s) 468
Eco57I CTGAAG 2 cut(s) 21, 213
Eco88I CYCGRG 1 cut(s) 990
EcoNI CCTNNNNNAGG 2 cut(s) 292, 633
EcoO109I RGGNCCY 3 cut(s) 134, 922, 1151
EcoRII CCWGG 3 cut(s) 805, 916, 1569
EcoRV GATATC 1 cut(s) 441
EcoT14I CCWWGG 2 cut(s) 293, 1467
EcoT22I ATGCAT 1 cut(s) 627
ErhI CCWWGG 2 cut(s) 293, 1467
FaeI CATG 5 cut(s) 436, 667, 982, 1298, 1327
FalI AAGNNNNNCTT 6 cut(s) 46, 78, 205, 237, 365, 397
FaqI GGGAC 5 cut(s) 158, 290, 581, 935, 1222
FatI CATG 5 cut(s) 432, 663, 978, 1294, 1323
FauNDI CATATG 1 cut(s) 687
FbaI TGATCA 3 cut(s) 682, 886, 1492
Fnu4HI GCNGC 5 cut(s) 267, 299, 366, 819, 1575
FokI GGATG 7 cut(s) 219, 324, 374, 461, 612, 704, 1115
Fsp4HI GCNGC 5 cut(s) 267, 299, 366, 819, 1575
FspBI CTAG 6 cut(s) 71, 294, 506, 576, 1155, 1364
GlaI GCGC 1 cut(s) 468
GluI GCNGC 5 cut(s) 267, 299, 366, 819, 1575
GsuI CTGGAG 4 cut(s) 447, 540, 990, 1520
HaeII RGCGCY 1 cut(s) 470
HaeIII GGCC 3 cut(s) 377, 574, 1152
HhaI GCGC 1 cut(s) 469
Hin1II CATG 5 cut(s) 436, 667, 982, 1298, 1327
Hin6I GCGC 1 cut(s) 467
HinP1I GCGC 1 cut(s) 467
HindIII AAGCTT 3 cut(s) 121, 1014, 1058
HinfI GANTC 5 cut(s) 502, 896, 1210, 1306, 1393
HphI GGTGA 2 cut(s) 1097, 1531
Hpy166II GTNNAC 2 cut(s) 495, 1129
Hpy188III TCNNGA 5 cut(s) 191, 519, 744, 969, 1214
Hpy8I GTNNAC 2 cut(s) 495, 1129
HpyAV CCTTC 8 cut(s) 45, 125, 298, 525, 587, 1177, 1198, 1510
HpyCH4III ACNGT 6 cut(s) 45, 499, 788, 836, 1343, 1475
HpyCH4IV ACGT 2 cut(s) 260, 487
HpyCH4V TGCA 9 cut(s) 77, 226, 551, 625, 978, 1052, 1238, 1387, 1577
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 374, 650, 1235
HpyF3I CTNAG 4 cut(s) 542, 935, 1212, 1264
HpySE526I ACGT 2 cut(s) 260, 487
Hsp92II CATG 5 cut(s) 436, 667, 982, 1298, 1327
HspAI GCGC 1 cut(s) 467
Ksp22I TGATCA 3 cut(s) 682, 886, 1492
Kzo9I GATC 6 cut(s) 59, 682, 720, 886, 1440, 1492
LguI GCTCTTC 1 cut(s) 1539
LmnI GCTCC 6 cut(s) 103, 248, 306, 466, 474, 1504
Lsp1109I GCAGC 4 cut(s) 253, 352, 805, 1561
LweI GCATC 4 cut(s) 64, 352, 634, 792
MaeI CTAG 6 cut(s) 71, 294, 506, 576, 1155, 1364
MaeII ACGT 2 cut(s) 260, 487
MaeIII GTNAC 9 cut(s) 206, 256, 762, 828, 954, 1085, 1337, 1519, 1536
MalI GATC 6 cut(s) 61, 684, 722, 888, 1442, 1494
MboI GATC 6 cut(s) 59, 682, 720, 886, 1440, 1492
MboII GAAGA 9 cut(s) 206, 366, 417, 707, 710, 1035, 1229, 1301, 1556
MflI RGATCY 2 cut(s) 59, 720
MhlI GDGCHC 3 cut(s) 943, 1162, 1371
MluCI AATT 3 cut(s) 240, 739, 1121
MlyI GAGTC 2 cut(s) 1204, 1315
MmeI TCCRAC 1 cut(s) 1394
Mph1103I ATGCAT 1 cut(s) 627
MseI TTAA 9 cut(s) 243, 282, 330, 678, 797, 1056, 1065, 1074, 1512
MslI CAYNNNNRTG 5 cut(s) 215, 630, 678, 690, 1094
MspR9I CCNGG 3 cut(s) 807, 918, 1571
MvaI CCWGG 3 cut(s) 807, 918, 1571
MvnI CGCG 1 cut(s) 306
MwoI GCNNNNNNNGC 4 cut(s) 95, 374, 650, 1235
NdeI CATATG 1 cut(s) 687
NdeII GATC 6 cut(s) 59, 682, 720, 886, 1440, 1492
NlaIII CATG 5 cut(s) 436, 667, 982, 1298, 1327
NlaIV GGNNCC 2 cut(s) 302, 923
NmuCI GTSAC 4 cut(s) 762, 828, 1085, 1519
NsiI ATGCAT 1 cut(s) 627
NspI RCATGY 1 cut(s) 982
OliI CACNNNNGTG 1 cut(s) 1094
PaeI GCATGC 1 cut(s) 982
PaeR7I CTCGAG 1 cut(s) 990
PciSI GCTCTTC 1 cut(s) 1539
PcsI WCGNNNNNNNCGW 1 cut(s) 266
PfeI GAWTC 3 cut(s) 502, 896, 1393
PkrI GCNGC 5 cut(s) 268, 300, 367, 820, 1576
PleI GAGTC 2 cut(s) 1204, 1314
PpsI GAGTC 2 cut(s) 1204, 1314
PpuMI RGGWCCY 2 cut(s) 134, 922
PshAI GACNNNNGTC 1 cut(s) 1305
PshBI ATTAAT 1 cut(s) 678
Psp5II RGGWCCY 2 cut(s) 134, 922
Psp6I CCWGG 3 cut(s) 805, 916, 1569
PspGI CCWGG 3 cut(s) 805, 916, 1569
PspN4I GGNNCC 2 cut(s) 302, 923
PspPI GGNCC 5 cut(s) 134, 812, 869, 922, 1151
PspPPI RGGWCCY 2 cut(s) 134, 922
PspXI VCTCGAGB 1 cut(s) 990
PsuI RGATCY 2 cut(s) 59, 720
RsaI GTAC 3 cut(s) 231, 494, 1457
RsaNI GTAC 3 cut(s) 230, 493, 1456
RseI CAYNNNNRTG 5 cut(s) 215, 630, 678, 690, 1094
SapI GCTCTTC 1 cut(s) 1539
SaqAI TTAA 9 cut(s) 243, 282, 330, 678, 797, 1056, 1065, 1074, 1512
SatI GCNGC 5 cut(s) 267, 299, 366, 819, 1575
Sau3AI GATC 6 cut(s) 59, 682, 720, 886, 1440, 1492
Sau96I GGNCC 5 cut(s) 134, 812, 869, 922, 1151
SchI GAGTC 2 cut(s) 1204, 1315
ScrFI CCNGG 3 cut(s) 807, 918, 1571
SduI GDGCHC 3 cut(s) 943, 1162, 1371
SfaNI GCATC 4 cut(s) 64, 352, 634, 792
Sfr274I CTCGAG 1 cut(s) 990
SinI GGWCC 4 cut(s) 134, 812, 869, 922
SlaI CTCGAG 1 cut(s) 990
SmiMI CAYNNNNRTG 5 cut(s) 215, 630, 678, 690, 1094
SmlI CTYRAG 2 cut(s) 823, 990
SmoI CTYRAG 2 cut(s) 823, 990
SphI GCATGC 1 cut(s) 982
Sse9I AATT 3 cut(s) 240, 739, 1121
SsiI CCGC 4 cut(s) 298, 304, 810, 1581
SspMI CTAG 6 cut(s) 71, 294, 506, 576, 1155, 1364
StyD4I CCNGG 3 cut(s) 805, 916, 1569
StyI CCWWGG 2 cut(s) 293, 1467
TaaI ACNGT 6 cut(s) 45, 499, 788, 836, 1343, 1475
TaiI ACGT 2 cut(s) 263, 490
TaqI TCGA 1 cut(s) 991
TasI AATT 3 cut(s) 240, 739, 1121
TauI GCSGC 1 cut(s) 301
TfiI GAWTC 3 cut(s) 502, 896, 1393
Tru1I TTAA 9 cut(s) 243, 282, 330, 678, 797, 1056, 1065, 1074, 1512
Tru9I TTAA 9 cut(s) 243, 282, 330, 678, 797, 1056, 1065, 1074, 1512
TscAI CASTG 2 cut(s) 504, 889
TseFI GTSAC 4 cut(s) 762, 828, 1085, 1519
TseI GCWGC 4 cut(s) 266, 365, 818, 1574
Tsp45I GTSAC 4 cut(s) 762, 828, 1085, 1519
TspDTI ATGAA 6 cut(s) 119, 522, 652, 708, 870, 909
TspRI CASTG 2 cut(s) 504, 889
VpaK11BI GGWCC 4 cut(s) 134, 812, 869, 922
VspI ATTAAT 1 cut(s) 678
XagI CCTNNNNNAGG 2 cut(s) 292, 633
XapI RAATTY 1 cut(s) 1121
XceI RCATGY 1 cut(s) 982
XhoI CTCGAG 1 cut(s) 990
XmaJI CCTAGG 1 cut(s) 293
XspI CTAG 6 cut(s) 71, 294, 506, 576, 1155, 1364
Zsp2I ATGCAT 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.