Rh6DG071600

NYN domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0013466
Physical Location & Seq
Reverse (-)
7675410 .. 7679066
3657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG071600.1

Sequence Viewer

Length: 1533 bp
ATGGCTTGCCAAAATACATCGACATCAATAGTGCCTTCAGAACCGTCCGAGCAAAGAGGATCTTATATGCTAGATGCAAACACAAACGCACTTCAAGCTCCAATGAACCAGCCAATCCGAAGCTTCTGTGAAGGTCCTGTGGCTATCCTTTGGGATATTGAAAACTGCCCTGTCCCAAGTGATGTTCGTCCTGAAGATGTAGCTGGTAACATAAGAATGGCTTTGCAGGTACATCCTGTAATTAAAGGAGCTGTTGTTACGTTTGCTGCGTATGGGGACTTTAATGCCTTCCCTAGGCGGCTCCGTGAGGGATGTCAGAGAACTGGTGTTAAACTCGTTGATGTTCCAAATGGAAGAAAGGATGCTGCTGACAAGGCCATCTTGGTTGATATGTTCTTGTTTGCCCTTGACAATCCTCCACCATCTTCCATCATGCTGATATCTGGGGATGTTGATTTTGCTCCAGCACTCCATATACTTGGGCAACGTGGGTACACAGTGATTCTAGTAATACCTTCTGGAGTGGGCGTTTCATCTGCTCTCAGCAATGCAGGAAAGTTTGTGTGGGACTGGCCTAGTGTGGCTCGTGGGGAAGGGTTTGTGCCTACAACCAAGTTTCAAATGCATCCTCGTGGAGGACAGGCTGATATTGCTGGCTATTTCATGGGTTGCCATATTAATGATCATATGGATGAAGAAGAAGCTATTTTATACAGGGGGATCTCACAAAGCTATTACAATTCAAGAGATTTTTCAATAGTGTCACAATCTTTATCTGAATATAACAGTAGTTCCTTAATGATGCCTGGCGGTCCTGCTGCCTTGAGGTCACACAGTCTCCCATCTGGTCTCAATGAAGTTCCTGCTGGACCTATTATTTCCACTGATCAAAATGAATCTACTTGGTGGGTTCAACCAGGGGACCTAAATGGTCTGAGGGCACAGCTTGAAAAGTTACTTGAATTTTCTGGAGGTTGCATGCCTCTTACTCGAGTTCCTTGCGAGTATCAGAAAGCTTTTGGAAGACCTCTCTATGTATCAGAGTATGGTGCATTTAAGCTTGTTAATCTGTTTAAGAAGTTGGGTGACACAATGACGGTAGATGGTAAAGGGCATAAGAAATTTGTTTACCTCCGAAACTGGAAAACAGGCCCTAGTGCCCCACCTCTGATTTCAACTGGGAAGGATAATAGTAGGAAAGGGAAGGGGACTCAGGAAGAGAGTATGGCTATTATTACAGGTAATGGCTCATCAGATGAGTTCTCAGAGGAGGAAAGAGTAGTTGTAGAGGAGCATGATGATAACCTAGAGCACTTCAAATATGAGTTGCAGGAGATTCTTGTTAGCTACTCTTGTCGGATTTTTTTGGGTTGTTTTGAGGCTATCTACCAGCAGAGGTACAAAAAACCCTTGGACTGTCAAAAGTTTGGTGTCGATCAACTGGAGGAGCTGTTTAAGAAGGTGACTGATGTGGTGGTGTTACTTGAAGAGCCTATTAGCAAGAGGAAGTTCCTGGCTGCAAGCGGTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN OST-HTH

Protein Analysis

510

Amino Acids

56.19

Weight (kDa)

5.45

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NYN PF01936 47 - 184 4.1e-27 NYN domain
OST-HTH PF12872 311 - 376 2.7e-08 OST-HTH/LOTUS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013466)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15560 AT2G15560
fragaria_vesca FvH4_2g05850 FvH4_2g05850
malus_domestica MD05G1082600.v1.1
prunus_persica Prupe.8G127000_v2.0.a1 Prupe.8G127000_v2.0.a1 Prupe.8G127000_v2.0.a1
pyrus_communis pycom05g07760
rosa_chinensis RchiOBHm_Chr6g0257731
rosa_laevigata RLG00000014719
rosa_multiflora Rmu_sc0011315.1_g000007
rosa_roxburghii Rroxscaffold_7G00208910
rosa_samantha Rh6AG085400 Rh6BG079700 Rh6CG074700 Rh6DG071600
rosa_wichuraiana Rw6G007670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 217
AciI CCGC 3 cut(s) 298, 810, 1524
AclWI GGATC 2 cut(s) 67, 728
AcsI RAATTY 2 cut(s) 962, 1121
AcuI CTGAAG 2 cut(s) 21, 213
AfaI GTAC 3 cut(s) 231, 494, 1400
AfiI CCNNNNNNNGG 2 cut(s) 294, 635
AjnI CCWGG 3 cut(s) 805, 916, 1512
Alw21I GWGCWC 1 cut(s) 1314
Alw26I GTCTC 2 cut(s) 842, 854
AlwI GGATC 2 cut(s) 67, 728
Ama87I CYCGRG 1 cut(s) 990
AoxI GGCC 3 cut(s) 375, 572, 1150
ApeKI GCWGC 4 cut(s) 266, 365, 818, 1517
ApoI RAATTY 2 cut(s) 962, 1121
AseI ATTAAT 1 cut(s) 678
AspA2I CCTAGG 1 cut(s) 293
AspS9I GGNCC 5 cut(s) 134, 812, 869, 922, 1151
AsuHPI GGTGA 2 cut(s) 1097, 1474
AvaI CYCGRG 1 cut(s) 990
AvaII GGWCC 4 cut(s) 134, 812, 869, 922
AvrII CCTAGG 1 cut(s) 293
BaeGI GKGCMC 2 cut(s) 943, 1162
BauI CACGAG 2 cut(s) 585, 630
BbsI GAAGAC 1 cut(s) 1030
Bbv12I GWGCWC 1 cut(s) 1314
BbvI GCAGC 4 cut(s) 253, 352, 805, 1504
BccI CCATC 5 cut(s) 386, 430, 437, 850, 1097
BcgI CGANNNNNNTGC 2 cut(s) 981, 1015
BciT130I CCWGG 3 cut(s) 807, 918, 1514
BclI TGATCA 2 cut(s) 682, 886
BcoDI GTCTC 2 cut(s) 842, 854
BfaI CTAG 6 cut(s) 71, 294, 506, 576, 1155, 1307
BfuAI ACCTGC 1 cut(s) 217
BisI GCNGC 5 cut(s) 267, 299, 366, 819, 1518
BlnI CCTAGG 1 cut(s) 293
BlsI GCNGC 5 cut(s) 268, 300, 367, 820, 1519
Bme1390I CCNGG 3 cut(s) 807, 918, 1514
Bme18I GGWCC 4 cut(s) 134, 812, 869, 922
BmeT110I CYCGRG 1 cut(s) 990
BmgT120I GGNCC 5 cut(s) 134, 812, 869, 922, 1151
BmiI GGNNCC 2 cut(s) 302, 923
BmrFI CCNGG 3 cut(s) 807, 918, 1514
BmrI ACTGGG 1 cut(s) 1188
BmsI GCATC 4 cut(s) 64, 352, 634, 792
BmuI ACTGGG 1 cut(s) 1188
BpiI GAAGAC 1 cut(s) 1030
BpmI CTGGAG 4 cut(s) 447, 540, 990, 1463
BpuEI CTTGAG 1 cut(s) 844
BsaI GGTCTC 1 cut(s) 854
BsaJI CCNNGG 3 cut(s) 293, 917, 1410
BsaXI ACNNNNNCTCC 8 cut(s) 240, 270, 513, 543, 822, 852, 1436, 1466
Bsc4I CCNNNNNNNGG 2 cut(s) 294, 635
Bse1I ACTGG 5 cut(s) 328, 575, 1145, 1183, 1446
Bse3DI GCAATG 1 cut(s) 553
BseBI CCWGG 3 cut(s) 807, 918, 1514
BseDI CCNNGG 3 cut(s) 293, 917, 1410
BseGI GGATG 6 cut(s) 232, 317, 367, 454, 625, 697
BseLI CCNNNNNNNGG 2 cut(s) 294, 635
BseMI GCAATG 1 cut(s) 553
BseMII CTCAG 4 cut(s) 556, 926, 1226, 1278
BseNI ACTGG 5 cut(s) 328, 575, 1145, 1183, 1446
BseRI GAGGAG 3 cut(s) 1283, 1304, 1460
BseSI GKGCMC 2 cut(s) 943, 1162
BseXI GCAGC 4 cut(s) 253, 352, 805, 1504
BshFI GGCC 3 cut(s) 377, 574, 1152
BsiHKAI GWGCWC 1 cut(s) 1314
BsiHKCI CYCGRG 1 cut(s) 990
BslFI GGGAC 5 cut(s) 158, 290, 581, 935, 1222
BslI CCNNNNNNNGG 2 cut(s) 294, 635
BsmAI GTCTC 2 cut(s) 842, 854
BsmFI GGGAC 5 cut(s) 158, 290, 581, 935, 1222
BsnI GGCC 3 cut(s) 377, 574, 1152
Bso31I GGTCTC 1 cut(s) 854
BsoBI CYCGRG 1 cut(s) 990
Bsp1286I GDGCHC 3 cut(s) 943, 1162, 1314
Bsp143I GATC 5 cut(s) 59, 682, 720, 886, 1435
BspACI CCGC 3 cut(s) 298, 810, 1524
BspANI GGCC 3 cut(s) 377, 574, 1152
BspCNI CTCAG 4 cut(s) 555, 927, 1225, 1277
BspLI GGNNCC 2 cut(s) 302, 923
BspMI ACCTGC 1 cut(s) 217
BspPI GGATC 2 cut(s) 67, 728
BspQI GCTCTTC 1 cut(s) 1482
BspTNI GGTCTC 1 cut(s) 854
BsrDI GCAATG 1 cut(s) 553
BsrI ACTGG 5 cut(s) 328, 575, 1145, 1183, 1446
BssECI CCNNGG 3 cut(s) 293, 917, 1410
BssMI GATC 5 cut(s) 59, 682, 720, 886, 1435
BssSI CACGAG 2 cut(s) 585, 630
BssT1I CCWWGG 2 cut(s) 293, 1410
Bst2BI CACGAG 2 cut(s) 585, 630
Bst2UI CCWGG 3 cut(s) 807, 918, 1514
Bst4CI ACNGT 6 cut(s) 45, 499, 788, 836, 1099, 1418
Bst6I CTCTTC 2 cut(s) 1212, 1482
BstC8I GCNNGC 4 cut(s) 7, 655, 980, 1522
BstDEI CTNAG 4 cut(s) 542, 935, 1212, 1264
BstENI CCTNNNNNAGG 2 cut(s) 292, 633
BstF5I GGATG 6 cut(s) 232, 317, 367, 454, 625, 697
BstKTI GATC 5 cut(s) 62, 685, 723, 889, 1438
BstMAI GTCTC 2 cut(s) 842, 854
BstMBI GATC 5 cut(s) 59, 682, 720, 886, 1435
BstMWI GCNNNNNNNGC 3 cut(s) 95, 374, 650
BstNI CCWGG 3 cut(s) 807, 918, 1514
BstNSI RCATGY 1 cut(s) 982
BstSCI CCNGG 3 cut(s) 805, 916, 1512
BstSLI GKGCMC 2 cut(s) 943, 1162
BstV1I GCAGC 4 cut(s) 253, 352, 805, 1504
BstV2I GAAGAC 1 cut(s) 1030
BstX2I RGATCY 2 cut(s) 59, 720
BstXI CCANNNNNNTGG 1 cut(s) 479
BstYI RGATCY 2 cut(s) 59, 720
BsuRI GGCC 3 cut(s) 377, 574, 1152
BtsCI GGATG 6 cut(s) 232, 317, 367, 454, 625, 697
BtsIMutI CAGTG 2 cut(s) 504, 882
BveI ACCTGC 1 cut(s) 217
Cac8I GCNNGC 4 cut(s) 7, 655, 980, 1522
Cfr13I GGNCC 5 cut(s) 134, 812, 869, 922, 1151
Csp6I GTAC 3 cut(s) 230, 493, 1399
CviAII CATG 4 cut(s) 433, 664, 979, 1295
CviQI GTAC 3 cut(s) 230, 493, 1399
DdeI CTNAG 4 cut(s) 542, 935, 1212, 1264
DpnI GATC 5 cut(s) 61, 684, 722, 888, 1437
DpnII GATC 5 cut(s) 59, 682, 720, 886, 1435
Eam1104I CTCTTC 2 cut(s) 1212, 1482
EarI CTCTTC 2 cut(s) 1212, 1482
Eco130I CCWWGG 2 cut(s) 293, 1410
Eco31I GGTCTC 1 cut(s) 854
Eco32I GATATC 1 cut(s) 441
Eco47I GGWCC 4 cut(s) 134, 812, 869, 922
Eco57I CTGAAG 2 cut(s) 21, 213
Eco88I CYCGRG 1 cut(s) 990
EcoNI CCTNNNNNAGG 2 cut(s) 292, 633
EcoO109I RGGNCCY 3 cut(s) 134, 922, 1151
EcoRII CCWGG 3 cut(s) 805, 916, 1512
EcoRV GATATC 1 cut(s) 441
EcoT14I CCWWGG 2 cut(s) 293, 1410
EcoT22I ATGCAT 1 cut(s) 627
ErhI CCWWGG 2 cut(s) 293, 1410
FaeI CATG 4 cut(s) 436, 667, 982, 1298
FalI AAGNNNNNCTT 6 cut(s) 46, 78, 205, 237, 365, 397
FaqI GGGAC 5 cut(s) 158, 290, 581, 935, 1222
FatI CATG 4 cut(s) 432, 663, 978, 1294
FauNDI CATATG 1 cut(s) 687
FbaI TGATCA 2 cut(s) 682, 886
Fnu4HI GCNGC 5 cut(s) 267, 299, 366, 819, 1518
FokI GGATG 6 cut(s) 219, 324, 374, 461, 612, 704
Fsp4HI GCNGC 5 cut(s) 267, 299, 366, 819, 1518
FspBI CTAG 6 cut(s) 71, 294, 506, 576, 1155, 1307
GluI GCNGC 5 cut(s) 267, 299, 366, 819, 1518
GsuI CTGGAG 4 cut(s) 447, 540, 990, 1463
HaeIII GGCC 3 cut(s) 377, 574, 1152
Hin1II CATG 4 cut(s) 436, 667, 982, 1298
HindIII AAGCTT 3 cut(s) 121, 1014, 1058
HinfI GANTC 4 cut(s) 502, 896, 1210, 1336
HphI GGTGA 2 cut(s) 1097, 1474
Hpy166II GTNNAC 2 cut(s) 495, 1129
Hpy188III TCNNGA 5 cut(s) 191, 519, 744, 969, 1214
Hpy8I GTNNAC 2 cut(s) 495, 1129
HpyAV CCTTC 8 cut(s) 45, 125, 298, 525, 587, 1177, 1198, 1453
HpyCH4III ACNGT 6 cut(s) 45, 499, 788, 836, 1099, 1418
HpyCH4IV ACGT 2 cut(s) 260, 487
HpyCH4V TGCA 8 cut(s) 77, 226, 551, 625, 978, 1052, 1330, 1520
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 374, 650
HpyF3I CTNAG 4 cut(s) 542, 935, 1212, 1264
HpySE526I ACGT 2 cut(s) 260, 487
Hsp92II CATG 4 cut(s) 436, 667, 982, 1298
Ksp22I TGATCA 2 cut(s) 682, 886
Kzo9I GATC 5 cut(s) 59, 682, 720, 886, 1435
LguI GCTCTTC 1 cut(s) 1482
LmnI GCTCC 6 cut(s) 103, 248, 306, 466, 1291, 1447
Lsp1109I GCAGC 4 cut(s) 253, 352, 805, 1504
LweI GCATC 4 cut(s) 64, 352, 634, 792
MaeI CTAG 6 cut(s) 71, 294, 506, 576, 1155, 1307
MaeII ACGT 2 cut(s) 260, 487
MaeIII GTNAC 8 cut(s) 206, 256, 762, 828, 954, 1085, 1462, 1479
MalI GATC 5 cut(s) 61, 684, 722, 888, 1437
MboI GATC 5 cut(s) 59, 682, 720, 886, 1435
MboII GAAGA 8 cut(s) 206, 366, 417, 707, 710, 1035, 1229, 1499
MflI RGATCY 2 cut(s) 59, 720
MhlI GDGCHC 3 cut(s) 943, 1162, 1314
MluCI AATT 4 cut(s) 240, 739, 962, 1121
MlyI GAGTC 1 cut(s) 1204
MmeI TCCRAC 1 cut(s) 1337
Mph1103I ATGCAT 1 cut(s) 627
MseI TTAA 9 cut(s) 243, 282, 330, 678, 797, 1056, 1065, 1074, 1455
MslI CAYNNNNRTG 4 cut(s) 215, 630, 678, 690
MspR9I CCNGG 3 cut(s) 807, 918, 1514
MvaI CCWGG 3 cut(s) 807, 918, 1514
MwoI GCNNNNNNNGC 3 cut(s) 95, 374, 650
NdeI CATATG 1 cut(s) 687
NdeII GATC 5 cut(s) 59, 682, 720, 886, 1435
NlaIII CATG 4 cut(s) 436, 667, 982, 1298
NlaIV GGNNCC 2 cut(s) 302, 923
NmuCI GTSAC 4 cut(s) 762, 828, 1085, 1462
NsiI ATGCAT 1 cut(s) 627
NspI RCATGY 1 cut(s) 982
PaeI GCATGC 1 cut(s) 982
PaeR7I CTCGAG 1 cut(s) 990
PciSI GCTCTTC 1 cut(s) 1482
PcsI WCGNNNNNNNCGW 1 cut(s) 266
PfeI GAWTC 3 cut(s) 502, 896, 1336
PkrI GCNGC 5 cut(s) 268, 300, 367, 820, 1519
PleI GAGTC 1 cut(s) 1204
PpsI GAGTC 1 cut(s) 1204
PpuMI RGGWCCY 2 cut(s) 134, 922
PshBI ATTAAT 1 cut(s) 678
Psp5II RGGWCCY 2 cut(s) 134, 922
Psp6I CCWGG 3 cut(s) 805, 916, 1512
PspGI CCWGG 3 cut(s) 805, 916, 1512
PspN4I GGNNCC 2 cut(s) 302, 923
PspPI GGNCC 5 cut(s) 134, 812, 869, 922, 1151
PspPPI RGGWCCY 2 cut(s) 134, 922
PspXI VCTCGAGB 1 cut(s) 990
PsuI RGATCY 2 cut(s) 59, 720
RsaI GTAC 3 cut(s) 231, 494, 1400
RsaNI GTAC 3 cut(s) 230, 493, 1399
RseI CAYNNNNRTG 4 cut(s) 215, 630, 678, 690
SapI GCTCTTC 1 cut(s) 1482
SaqAI TTAA 9 cut(s) 243, 282, 330, 678, 797, 1056, 1065, 1074, 1455
SatI GCNGC 5 cut(s) 267, 299, 366, 819, 1518
Sau3AI GATC 5 cut(s) 59, 682, 720, 886, 1435
Sau96I GGNCC 5 cut(s) 134, 812, 869, 922, 1151
SchI GAGTC 1 cut(s) 1204
ScrFI CCNGG 3 cut(s) 807, 918, 1514
SduI GDGCHC 3 cut(s) 943, 1162, 1314
SfaNI GCATC 4 cut(s) 64, 352, 634, 792
Sfr274I CTCGAG 1 cut(s) 990
SinI GGWCC 4 cut(s) 134, 812, 869, 922
SlaI CTCGAG 1 cut(s) 990
SmiMI CAYNNNNRTG 4 cut(s) 215, 630, 678, 690
SmlI CTYRAG 2 cut(s) 823, 990
SmoI CTYRAG 2 cut(s) 823, 990
SphI GCATGC 1 cut(s) 982
Sse9I AATT 4 cut(s) 240, 739, 962, 1121
SsiI CCGC 3 cut(s) 298, 810, 1524
SspMI CTAG 6 cut(s) 71, 294, 506, 576, 1155, 1307
StyD4I CCNGG 3 cut(s) 805, 916, 1512
StyI CCWWGG 2 cut(s) 293, 1410
TaaI ACNGT 6 cut(s) 45, 499, 788, 836, 1099, 1418
TaiI ACGT 2 cut(s) 263, 490
TaqI TCGA 3 cut(s) 20, 991, 1434
TasI AATT 4 cut(s) 240, 739, 962, 1121
TauI GCSGC 1 cut(s) 301
TfiI GAWTC 3 cut(s) 502, 896, 1336
Tru1I TTAA 9 cut(s) 243, 282, 330, 678, 797, 1056, 1065, 1074, 1455
Tru9I TTAA 9 cut(s) 243, 282, 330, 678, 797, 1056, 1065, 1074, 1455
TscAI CASTG 2 cut(s) 504, 889
TseFI GTSAC 4 cut(s) 762, 828, 1085, 1462
TseI GCWGC 4 cut(s) 266, 365, 818, 1517
Tsp45I GTSAC 4 cut(s) 762, 828, 1085, 1462
TspDTI ATGAA 6 cut(s) 119, 522, 652, 708, 870, 909
TspGWI ACGGA 1 cut(s) 293
TspRI CASTG 2 cut(s) 504, 889
VpaK11BI GGWCC 4 cut(s) 134, 812, 869, 922
VspI ATTAAT 1 cut(s) 678
XagI CCTNNNNNAGG 2 cut(s) 292, 633
XapI RAATTY 2 cut(s) 962, 1121
XceI RCATGY 1 cut(s) 982
XhoI CTCGAG 1 cut(s) 990
XmaJI CCTAGG 1 cut(s) 293
XspI CTAG 6 cut(s) 71, 294, 506, 576, 1155, 1307
Zsp2I ATGCAT 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.