Rmu_sc0011315.1_g000007

NYN domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011315.1
OG0013466
Physical Location & Seq
Forward (+)
18865 .. 20331
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011315.1_g000007.1.cds

Sequence Viewer

Length: 1467 bp
atgctagatgcaaacacgaacgcacttcaagctccaatgaaccagccaatccgaagcttctgtgaaggtcctgtggctatcctttgggatattgaaaactgccctgtcccaagtgatgttcgtcctgaagatgtagctggtaacataagaatggctttgcaggtacatcctgtaattaaaggagctgttgttacgtttgctgcgtatggggactttaatgccttccctaggcggcttcgcgagggatgtcagagaactggtgttaaactcgttgatgttccaaatggaagaaaggatgctgctgacaaggccatcttggttgatatgttcttgtttgcccttgacaatcctccaccatcttccatcatgctgatatctggtgatgttgattttgctccagcgctccatatacttgggcaacgtgggtacacagtgattctagtaataccttctggagtgggcgtttcatctgctctcagcaatgcaggaaagtttgtgtgggactggcctagtgtggctcgtggggaagggtttgtgcctacaaccaagtttcaaatgcatcctcgtggaggacaggctgatattgctggctatttcatgggttgccatattaatgatcatatggatgatgaagaagctattttatacagggggatctcacaaagctattacaattcaagagatttttcaatagtgtcacaatctttatctgaatataacagtagttccttaatgatgcctggcggtcctgctgccttgaggtcacacagtctcccatctggtctcaatgaagttcctgctggacctattatttccactgatcaaaatgaatctacttggtgggttcaaccaggggacctaaatggtctgagggcacagcttgaaaagttacttgaactttctggaggttgcatgcctcttactcgagttccttgcgagtatcagaaagcttttggaagacctctctatgtagcagagtatggtgcatttaagcttgttaatctgtttaagaagttgggtgacacaatgacggtagatggtaaagggcataagaaatttgtttacctccgaaactggaaaacaggccctagtgccccacctttgatttcaactgggaaggataatagtaggaaagggaaggggactcaggaagagagtatggctattattacaggtaatggctcatcagatgagttctcagaggaggaaagagtagttgtagaggagcatgatgataacctagagcacttcaaatatgagttgcaggagattcttgttagctactcttgtcggatttttctgggttgttttgaggctatctaccagcaaaggtacaaaaaacccttggactgtcaaaagtttggtgtcgatcaactggaggagctgtttaagaaggtgactgatgtggtggtgttacttgaagagcctattagcaagaggaagttcctggctgctagcggtggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN OST-HTH

Protein Analysis

488

Amino Acids

53.77

Weight (kDa)

5.52

Isoelectric Point (pI)

41.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013466)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15560 AT2G15560
fragaria_vesca FvH4_2g05850 FvH4_2g05850
malus_domestica MD05G1082600.v1.1
prunus_persica Prupe.8G127000_v2.0.a1 Prupe.8G127000_v2.0.a1 Prupe.8G127000_v2.0.a1
pyrus_communis pycom05g07760
rosa_chinensis RchiOBHm_Chr6g0257731
rosa_laevigata RLG00000014719
rosa_multiflora Rmu_sc0011315.1_g000007
rosa_roxburghii Rroxscaffold_7G00208910
rosa_samantha Rh6AG085400 Rh6BG079700 Rh6CG074700 Rh6DG071600
rosa_wichuraiana Rw6G007670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 151
AccII CGCG 1 cut(s) 240
AciI CCGC 3 cut(s) 232, 744, 1458
AclWI GGATC 1 cut(s) 662
AcsI RAATTY 1 cut(s) 1055
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 3 cut(s) 165, 428, 1334
AfeI AGCGCT 1 cut(s) 402
AfiI CCNNNNNNNGG 2 cut(s) 228, 569
AjnI CCWGG 3 cut(s) 739, 850, 1446
Alw21I GWGCWC 1 cut(s) 1248
Alw26I GTCTC 2 cut(s) 776, 788
AlwI GGATC 1 cut(s) 662
Ama87I CYCGRG 1 cut(s) 924
Aor51HI AGCGCT 1 cut(s) 402
AoxI GGCC 3 cut(s) 309, 506, 1084
ApeKI GCWGC 4 cut(s) 200, 299, 752, 1451
ApoI RAATTY 1 cut(s) 1055
AseI ATTAAT 1 cut(s) 612
AspA2I CCTAGG 1 cut(s) 227
AspLEI GCGC 1 cut(s) 403
AspS9I GGNCC 5 cut(s) 68, 746, 803, 856, 1085
AsuHPI GGTGA 3 cut(s) 392, 1031, 1408
AsuNHI GCTAGC 1 cut(s) 1454
AvaI CYCGRG 1 cut(s) 924
AvaII GGWCC 4 cut(s) 68, 746, 803, 856
AvrII CCTAGG 1 cut(s) 227
BaeGI GKGCMC 2 cut(s) 877, 1096
BauI CACGAG 2 cut(s) 519, 564
BbsI GAAGAC 1 cut(s) 964
Bbv12I GWGCWC 1 cut(s) 1248
BbvI GCAGC 4 cut(s) 187, 286, 739, 1438
BccI CCATC 5 cut(s) 320, 364, 371, 784, 1031
BcgI CGANNNNNNTGC 2 cut(s) 915, 949
BciT130I CCWGG 3 cut(s) 741, 852, 1448
BclI TGATCA 2 cut(s) 616, 820
BcoDI GTCTC 2 cut(s) 776, 788
BfaI CTAG 7 cut(s) 5, 228, 440, 510, 1089, 1241, 1455
BfoI RGCGCY 1 cut(s) 404
BfuAI ACCTGC 1 cut(s) 151
BisI GCNGC 5 cut(s) 201, 233, 300, 753, 1452
BlnI CCTAGG 1 cut(s) 227
BlsI GCNGC 5 cut(s) 202, 234, 301, 754, 1453
Bme1390I CCNGG 3 cut(s) 741, 852, 1448
Bme18I GGWCC 4 cut(s) 68, 746, 803, 856
BmeT110I CYCGRG 1 cut(s) 924
BmgT120I GGNCC 5 cut(s) 68, 746, 803, 856, 1085
BmiI GGNNCC 1 cut(s) 857
BmrFI CCNGG 3 cut(s) 741, 852, 1448
BmrI ACTGGG 1 cut(s) 1122
BmsI GCATC 3 cut(s) 286, 568, 726
BmtI GCTAGC 1 cut(s) 1458
BmuI ACTGGG 1 cut(s) 1122
BpiI GAAGAC 1 cut(s) 964
BpmI CTGGAG 4 cut(s) 381, 474, 924, 1397
BpuEI CTTGAG 1 cut(s) 778
BsaI GGTCTC 1 cut(s) 788
BsaJI CCNNGG 3 cut(s) 227, 851, 1344
BsaXI ACNNNNNCTCC 8 cut(s) 174, 204, 447, 477, 756, 786, 1370, 1400
Bsc4I CCNNNNNNNGG 2 cut(s) 228, 569
Bse1I ACTGG 5 cut(s) 262, 509, 1079, 1117, 1380
Bse3DI GCAATG 1 cut(s) 487
BseBI CCWGG 3 cut(s) 741, 852, 1448
BseDI CCNNGG 3 cut(s) 227, 851, 1344
BseGI GGATG 5 cut(s) 166, 251, 301, 559, 631
BseLI CCNNNNNNNGG 2 cut(s) 228, 569
BseMI GCAATG 1 cut(s) 487
BseMII CTCAG 4 cut(s) 490, 860, 1160, 1212
BseNI ACTGG 5 cut(s) 262, 509, 1079, 1117, 1380
BseRI GAGGAG 3 cut(s) 1217, 1238, 1394
BseSI GKGCMC 2 cut(s) 877, 1096
BseXI GCAGC 4 cut(s) 187, 286, 739, 1438
Bsh1236I CGCG 1 cut(s) 240
BshFI GGCC 3 cut(s) 311, 508, 1086
BsiHKAI GWGCWC 1 cut(s) 1248
BsiHKCI CYCGRG 1 cut(s) 924
BslFI GGGAC 5 cut(s) 92, 224, 515, 869, 1156
BslI CCNNNNNNNGG 2 cut(s) 228, 569
BsmAI GTCTC 2 cut(s) 776, 788
BsmFI GGGAC 5 cut(s) 92, 224, 515, 869, 1156
BsnI GGCC 3 cut(s) 311, 508, 1086
Bso31I GGTCTC 1 cut(s) 788
BsoBI CYCGRG 1 cut(s) 924
Bsp1286I GDGCHC 3 cut(s) 877, 1096, 1248
Bsp143I GATC 4 cut(s) 616, 654, 820, 1369
Bsp68I TCGCGA 1 cut(s) 240
BspACI CCGC 3 cut(s) 232, 744, 1458
BspANI GGCC 3 cut(s) 311, 508, 1086
BspCNI CTCAG 4 cut(s) 489, 861, 1159, 1211
BspFNI CGCG 1 cut(s) 240
BspLI GGNNCC 1 cut(s) 857
BspMI ACCTGC 1 cut(s) 151
BspOI GCTAGC 1 cut(s) 1458
BspPI GGATC 1 cut(s) 662
BspQI GCTCTTC 1 cut(s) 1416
BspTNI GGTCTC 1 cut(s) 788
BsrDI GCAATG 1 cut(s) 487
BsrI ACTGG 5 cut(s) 262, 509, 1079, 1117, 1380
BssECI CCNNGG 3 cut(s) 227, 851, 1344
BssMI GATC 4 cut(s) 616, 654, 820, 1369
BssSI CACGAG 2 cut(s) 519, 564
BssT1I CCWWGG 2 cut(s) 227, 1344
Bst2BI CACGAG 2 cut(s) 519, 564
Bst2UI CCWGG 3 cut(s) 741, 852, 1448
Bst4CI ACNGT 5 cut(s) 433, 722, 770, 1033, 1352
Bst6I CTCTTC 2 cut(s) 1146, 1416
BstC8I GCNNGC 3 cut(s) 589, 914, 1456
BstDEI CTNAG 4 cut(s) 476, 869, 1146, 1198
BstENI CCTNNNNNAGG 2 cut(s) 226, 567
BstF5I GGATG 5 cut(s) 166, 251, 301, 559, 631
BstFNI CGCG 1 cut(s) 240
BstH2I RGCGCY 1 cut(s) 404
BstHHI GCGC 1 cut(s) 403
BstKTI GATC 4 cut(s) 619, 657, 823, 1372
BstMAI GTCTC 2 cut(s) 776, 788
BstMBI GATC 4 cut(s) 616, 654, 820, 1369
BstMWI GCNNNNNNNGC 3 cut(s) 29, 308, 584
BstNI CCWGG 3 cut(s) 741, 852, 1448
BstNSI RCATGY 1 cut(s) 916
BstSCI CCNGG 3 cut(s) 739, 850, 1446
BstSLI GKGCMC 2 cut(s) 877, 1096
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 4 cut(s) 187, 286, 739, 1438
BstV2I GAAGAC 1 cut(s) 964
BstX2I RGATCY 1 cut(s) 654
BstXI CCANNNNNNTGG 1 cut(s) 413
BstYI RGATCY 1 cut(s) 654
BsuRI GGCC 3 cut(s) 311, 508, 1086
BtsCI GGATG 5 cut(s) 166, 251, 301, 559, 631
BtsIMutI CAGTG 2 cut(s) 438, 816
BtuMI TCGCGA 1 cut(s) 240
BveI ACCTGC 1 cut(s) 151
Cac8I GCNNGC 3 cut(s) 589, 914, 1456
CfoI GCGC 1 cut(s) 403
Cfr13I GGNCC 5 cut(s) 68, 746, 803, 856, 1085
Csp6I GTAC 3 cut(s) 164, 427, 1333
CviAII CATG 4 cut(s) 367, 598, 913, 1229
CviQI GTAC 3 cut(s) 164, 427, 1333
DdeI CTNAG 4 cut(s) 476, 869, 1146, 1198
DpnI GATC 4 cut(s) 618, 656, 822, 1371
DpnII GATC 4 cut(s) 616, 654, 820, 1369
Eam1104I CTCTTC 2 cut(s) 1146, 1416
EarI CTCTTC 2 cut(s) 1146, 1416
Eco130I CCWWGG 2 cut(s) 227, 1344
Eco31I GGTCTC 1 cut(s) 788
Eco32I GATATC 1 cut(s) 375
Eco47I GGWCC 4 cut(s) 68, 746, 803, 856
Eco47III AGCGCT 1 cut(s) 402
Eco57I CTGAAG 1 cut(s) 147
Eco88I CYCGRG 1 cut(s) 924
EcoNI CCTNNNNNAGG 2 cut(s) 226, 567
EcoO109I RGGNCCY 3 cut(s) 68, 856, 1085
EcoRII CCWGG 3 cut(s) 739, 850, 1446
EcoRV GATATC 1 cut(s) 375
EcoT14I CCWWGG 2 cut(s) 227, 1344
EcoT22I ATGCAT 1 cut(s) 561
ErhI CCWWGG 2 cut(s) 227, 1344
FaeI CATG 4 cut(s) 370, 601, 916, 1232
FalI AAGNNNNNCTT 4 cut(s) 139, 171, 299, 331
FaqI GGGAC 5 cut(s) 92, 224, 515, 869, 1156
FatI CATG 4 cut(s) 366, 597, 912, 1228
FauNDI CATATG 1 cut(s) 621
FbaI TGATCA 2 cut(s) 616, 820
Fnu4HI GCNGC 5 cut(s) 201, 233, 300, 753, 1452
FokI GGATG 5 cut(s) 153, 258, 308, 546, 638
Fsp4HI GCNGC 5 cut(s) 201, 233, 300, 753, 1452
FspBI CTAG 7 cut(s) 5, 228, 440, 510, 1089, 1241, 1455
GlaI GCGC 1 cut(s) 402
GluI GCNGC 5 cut(s) 201, 233, 300, 753, 1452
GsuI CTGGAG 4 cut(s) 381, 474, 924, 1397
HaeII RGCGCY 1 cut(s) 404
HaeIII GGCC 3 cut(s) 311, 508, 1086
HhaI GCGC 1 cut(s) 403
Hin1II CATG 4 cut(s) 370, 601, 916, 1232
Hin6I GCGC 1 cut(s) 401
HinP1I GCGC 1 cut(s) 401
HindIII AAGCTT 3 cut(s) 55, 948, 992
HinfI GANTC 4 cut(s) 436, 830, 1144, 1270
HphI GGTGA 3 cut(s) 392, 1031, 1408
Hpy166II GTNNAC 2 cut(s) 429, 1063
Hpy188I TCNGA 9 cut(s) 53, 252, 712, 870, 945, 1070, 1189, 1201, 1293
Hpy188III TCNNGA 6 cut(s) 125, 239, 453, 678, 903, 1148
Hpy8I GTNNAC 2 cut(s) 429, 1063
HpyAV CCTTC 7 cut(s) 59, 232, 459, 521, 1111, 1132, 1387
HpyCH4III ACNGT 5 cut(s) 433, 722, 770, 1033, 1352
HpyCH4IV ACGT 2 cut(s) 194, 421
HpyCH4V TGCA 7 cut(s) 11, 160, 485, 559, 912, 986, 1264
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 308, 584
HpyF3I CTNAG 4 cut(s) 476, 869, 1146, 1198
HpySE526I ACGT 2 cut(s) 194, 421
Hsp92II CATG 4 cut(s) 370, 601, 916, 1232
HspAI GCGC 1 cut(s) 401
Ksp22I TGATCA 2 cut(s) 616, 820
Kzo9I GATC 4 cut(s) 616, 654, 820, 1369
LguI GCTCTTC 1 cut(s) 1416
LmnI GCTCC 6 cut(s) 37, 182, 400, 408, 1225, 1381
Lsp1109I GCAGC 4 cut(s) 187, 286, 739, 1438
LweI GCATC 3 cut(s) 286, 568, 726
MaeI CTAG 7 cut(s) 5, 228, 440, 510, 1089, 1241, 1455
MaeII ACGT 2 cut(s) 194, 421
MaeIII GTNAC 8 cut(s) 140, 190, 696, 762, 888, 1019, 1396, 1413
MalI GATC 4 cut(s) 618, 656, 822, 1371
MboI GATC 4 cut(s) 616, 654, 820, 1369
MboII GAAGA 7 cut(s) 140, 300, 351, 644, 969, 1163, 1433
MflI RGATCY 1 cut(s) 654
MhlI GDGCHC 3 cut(s) 877, 1096, 1248
MluCI AATT 3 cut(s) 174, 673, 1055
MlyI GAGTC 1 cut(s) 1138
MmeI TCCRAC 1 cut(s) 1271
Mph1103I ATGCAT 1 cut(s) 561
MseI TTAA 9 cut(s) 177, 216, 264, 612, 731, 990, 999, 1008, 1389
MslI CAYNNNNRTG 4 cut(s) 149, 564, 612, 624
MspR9I CCNGG 3 cut(s) 741, 852, 1448
MvaI CCWGG 3 cut(s) 741, 852, 1448
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 3 cut(s) 29, 308, 584
NdeI CATATG 1 cut(s) 621
NdeII GATC 4 cut(s) 616, 654, 820, 1369
NheI GCTAGC 1 cut(s) 1454
NlaIII CATG 4 cut(s) 370, 601, 916, 1232
NlaIV GGNNCC 1 cut(s) 857
NmuCI GTSAC 4 cut(s) 696, 762, 1019, 1396
NruI TCGCGA 1 cut(s) 240
NsiI ATGCAT 1 cut(s) 561
NspI RCATGY 1 cut(s) 916
PaeI GCATGC 1 cut(s) 916
PaeR7I CTCGAG 1 cut(s) 924
PciSI GCTCTTC 1 cut(s) 1416
PcsI WCGNNNNNNNCGW 1 cut(s) 200
PfeI GAWTC 3 cut(s) 436, 830, 1270
PkrI GCNGC 5 cut(s) 202, 234, 301, 754, 1453
PleI GAGTC 1 cut(s) 1138
PpsI GAGTC 1 cut(s) 1138
PpuMI RGGWCCY 2 cut(s) 68, 856
PshBI ATTAAT 1 cut(s) 612
Psp5II RGGWCCY 2 cut(s) 68, 856
Psp6I CCWGG 3 cut(s) 739, 850, 1446
PspGI CCWGG 3 cut(s) 739, 850, 1446
PspN4I GGNNCC 1 cut(s) 857
PspPI GGNCC 5 cut(s) 68, 746, 803, 856, 1085
PspPPI RGGWCCY 2 cut(s) 68, 856
PspXI VCTCGAGB 1 cut(s) 924
PsuI RGATCY 1 cut(s) 654
RruI TCGCGA 1 cut(s) 240
RsaI GTAC 3 cut(s) 165, 428, 1334
RsaNI GTAC 3 cut(s) 164, 427, 1333
RseI CAYNNNNRTG 4 cut(s) 149, 564, 612, 624
SapI GCTCTTC 1 cut(s) 1416
SaqAI TTAA 9 cut(s) 177, 216, 264, 612, 731, 990, 999, 1008, 1389
SatI GCNGC 5 cut(s) 201, 233, 300, 753, 1452
Sau3AI GATC 4 cut(s) 616, 654, 820, 1369
Sau96I GGNCC 5 cut(s) 68, 746, 803, 856, 1085
SchI GAGTC 1 cut(s) 1138
ScrFI CCNGG 3 cut(s) 741, 852, 1448
SduI GDGCHC 3 cut(s) 877, 1096, 1248
SfaNI GCATC 3 cut(s) 286, 568, 726
Sfr274I CTCGAG 1 cut(s) 924
SinI GGWCC 4 cut(s) 68, 746, 803, 856
SlaI CTCGAG 1 cut(s) 924
SmiMI CAYNNNNRTG 4 cut(s) 149, 564, 612, 624
SmlI CTYRAG 2 cut(s) 757, 924
SmoI CTYRAG 2 cut(s) 757, 924
SphI GCATGC 1 cut(s) 916
Sse9I AATT 3 cut(s) 174, 673, 1055
SsiI CCGC 3 cut(s) 232, 744, 1458
SspMI CTAG 7 cut(s) 5, 228, 440, 510, 1089, 1241, 1455
StyD4I CCNGG 3 cut(s) 739, 850, 1446
StyI CCWWGG 2 cut(s) 227, 1344
TaaI ACNGT 5 cut(s) 433, 722, 770, 1033, 1352
TaiI ACGT 2 cut(s) 197, 424
TaqI TCGA 2 cut(s) 925, 1368
TasI AATT 3 cut(s) 174, 673, 1055
TauI GCSGC 1 cut(s) 235
TfiI GAWTC 3 cut(s) 436, 830, 1270
Tru1I TTAA 9 cut(s) 177, 216, 264, 612, 731, 990, 999, 1008, 1389
Tru9I TTAA 9 cut(s) 177, 216, 264, 612, 731, 990, 999, 1008, 1389
TscAI CASTG 2 cut(s) 438, 823
TseFI GTSAC 4 cut(s) 696, 762, 1019, 1396
TseI GCWGC 4 cut(s) 200, 299, 752, 1451
Tsp45I GTSAC 4 cut(s) 696, 762, 1019, 1396
TspDTI ATGAA 6 cut(s) 53, 456, 586, 645, 804, 843
TspRI CASTG 2 cut(s) 438, 823
VpaK11BI GGWCC 4 cut(s) 68, 746, 803, 856
VspI ATTAAT 1 cut(s) 612
XagI CCTNNNNNAGG 2 cut(s) 226, 567
XapI RAATTY 1 cut(s) 1055
XceI RCATGY 1 cut(s) 916
XhoI CTCGAG 1 cut(s) 924
XmaJI CCTAGG 1 cut(s) 227
XspI CTAG 7 cut(s) 5, 228, 440, 510, 1089, 1241, 1455
Zsp2I ATGCAT 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.