Prupe.8G127000_v2.0.a1

NYN domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0013466
Physical Location & Seq
Forward (+)
15119003 .. 15123285
4283 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G127000.3

Sequence Viewer

Length: 1596 bp
ATGGCTTGCCCAAATACATCTACATCAATAGTGCGTTCAGAACCGTTAGAGCAAAGAGGAGCACATATATCAGATTCAAATACAAACATGCTTCAAGCTCCAACAAACCAGCCCAGCCGAAGCTTCTCTGATGGTCCTGTGGCTATCCTTTGGGATATTGAGAACTGCCCTGTTCCTAGTGATGTCCGTCCTGAAGATGTAGCTGGTAATATCAGAATGGCTTTGCAGGTGCATCCTGTAATTAAAGGAGCGGTTATGACGTTTTCTGCTTATGGGGACTTTAATGCCTTCCCCAGGCGACTTCGCGAGGGATGCCAGAGAACTGGTGTTAAACTAATTGATGTTCCAAATGGAAGAAAGGATGCTGCTGACAAGGCTATCTTGGTTGATATGTTCCTGTTTGCCCTTGACAATCCTCCACCTTCTTCCATCATGCTGATCTCTGGGGATGTTGATTTTGCTCCAGCGCTTCATATACTTGGGCAACGTGGATATATTGTGATCCTGGTAATCCCTTCTGGAGTTGGTGTTTCATCTGCTCTCAGCAATGCTGGTAAGTTTGTGTGGGACTGGCCTAGTGTGGCTCGTGGAGAAGGCTTTGTCCCTGCTACTAAGGTTTTAATGCATCCTCGCGGGGGTCACTCTGATATTTCTGGGTATTTCATGGGTTGCCACATCAATGATAATGTAGATATCCAAAATGAAGAAGAAGCTATCTTATATAGGGGAGTATCACAAAGCTATTACAACTCAAGAGATTTTTCAATAGTCTCACAATCAGTATCTGAATTCAACAGTAGTTCCTTAATGATGCCTTGCTGTCCTACTGCTTCAAGGTCACACAGTCTCCCGTCTGGTCTCAATGAAGTTTCTGCTGGACCTCTAATTTCTGGCGATCAAAATGAATCTACTTGGTGGGTTCAGCCAGGGGACCTAAATGGTCTGAAGGGACAGCTTGTAAAATTGCTTGAACTTTCAGGAGGTTGCTTGCCTCTTATCAGAGTTCCTTCTGAGTATCAGAAAGTTTTCGGAAGGCCTCTTTATGTATCAGAGTATGGTGCGTTCAAGCTTGTAAATCTGTTCAAGAAGCTGGGTGACACAATGTCTGTGGAGGGAAAAGGGAACAAGAGATTTGTCTACCTCCGAAACTGGAAAACAGGCCCAAGTGCACCACCTTTGGTTTTGTCAAAGAAGGATAATAAGAAAGGGAAGGGGACTCAAGAAGATTGCATGGATATTACTACTGGCAATGGTTCATCAGATGAGTTCTCAGAGGAGGAAAGAGTTGTTGTAGAAGAACATGATGAGAAGAGCCAACGGAAGACCAATGTGGGAACAGGAGATAAATGTGAAATTGATGACCGCAGTATTGAGAATTTCAAATATGAGTTGCAAGAGATTCTTGTCAGCTACTCTTGTCGGATTTTCTTGGGCTGCTTTGAGGCGATCTACCAGCAAAGGTACAAAAAACCTCTGGATTATCGGAAGTTCAGCGTTAATCAGCTAGAGGAACTGTTTGAGAAGGTGACAGATGTGGTGGTGTTGCTTGAAGAGCCAGTTAGCAAGAGGAAGTTCCTGGCTGCAAGTGGTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN OST-HTH

Protein Analysis

532

Amino Acids

58.56

Weight (kDa)

5.67

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013466)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15560 AT2G15560
fragaria_vesca FvH4_2g05850 FvH4_2g05850
malus_domestica MD05G1082600.v1.1
prunus_persica Prupe.8G127000_v2.0.a1 Prupe.8G127000_v2.0.a1 Prupe.8G127000_v2.0.a1
pyrus_communis pycom05g07760
rosa_chinensis RchiOBHm_Chr6g0257731
rosa_laevigata RLG00000014719
rosa_multiflora Rmu_sc0011315.1_g000007
rosa_roxburghii Rroxscaffold_7G00208910
rosa_samantha Rh6AG085400 Rh6BG079700 Rh6CG074700 Rh6DG071600
rosa_wichuraiana Rw6G007670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 217
Acc36I ACCTGC 1 cut(s) 217
AccBSI CCGCTC 1 cut(s) 251
AccI GTMKAC 1 cut(s) 1137
AccII CGCG 2 cut(s) 306, 633
AciI CCGC 3 cut(s) 251, 633, 1363
AclWI GGATC 1 cut(s) 496
AcsI RAATTY 2 cut(s) 788, 1375
AcuI CTGAAG 2 cut(s) 213, 965
AfaI GTAC 1 cut(s) 1463
AfeI AGCGCT 1 cut(s) 468
AfiI CCNNNNNNNGG 2 cut(s) 294, 635
AhdI GACNNNNNGTC 1 cut(s) 1102
AjnI CCWGG 4 cut(s) 293, 504, 925, 1575
Alw21I GWGCWC 2 cut(s) 64, 1171
Alw26I GTCTC 3 cut(s) 775, 851, 863
Alw44I GTGCAC 1 cut(s) 1167
AlwI GGATC 1 cut(s) 496
AlwNI CAGNNNCTG 1 cut(s) 785
Aor51HI AGCGCT 1 cut(s) 468
AoxI GGCC 3 cut(s) 572, 1034, 1159
ApaLI GTGCAC 1 cut(s) 1167
ApeKI GCWGC 3 cut(s) 365, 1434, 1580
ApoI RAATTY 2 cut(s) 788, 1375
Asp700I GAANNNNTTC 1 cut(s) 1025
AspLEI GCGC 1 cut(s) 469
AspS9I GGNCC 4 cut(s) 134, 878, 931, 1160
AsuHPI GGTGA 2 cut(s) 1106, 1537
AvaII GGWCC 3 cut(s) 134, 878, 931
BaeGI GKGCMC 1 cut(s) 1171
BauI CACGAG 1 cut(s) 585
BbsI GAAGAC 1 cut(s) 1328
Bbv12I GWGCWC 2 cut(s) 64, 1171
BbvI GCAGC 3 cut(s) 352, 1421, 1567
BccI CCATC 2 cut(s) 125, 437
BciT130I CCWGG 4 cut(s) 295, 506, 927, 1577
BcoDI GTCTC 3 cut(s) 775, 851, 863
BfaI CTAG 3 cut(s) 177, 576, 1505
BfoI RGCGCY 1 cut(s) 470
BfuAI ACCTGC 1 cut(s) 217
BisI GCNGC 3 cut(s) 366, 1435, 1581
BlsI GCNGC 3 cut(s) 367, 1436, 1582
Bme1390I CCNGG 4 cut(s) 295, 506, 927, 1577
Bme18I GGWCC 3 cut(s) 134, 878, 931
BmeRI GACNNNNNGTC 1 cut(s) 1102
BmgT120I GGNCC 4 cut(s) 134, 878, 931, 1160
BmiI GGNNCC 1 cut(s) 932
BmrFI CCNGG 4 cut(s) 295, 506, 927, 1577
BmsI GCATC 5 cut(s) 241, 302, 352, 634, 801
BpiI GAAGAC 1 cut(s) 1328
BpmI CTGGAG 2 cut(s) 447, 540
BpuEI CTTGAG 2 cut(s) 736, 1203
BsaI GGTCTC 1 cut(s) 863
BsaJI CCNNGG 2 cut(s) 293, 926
BsaXI ACNNNNNCTCC 4 cut(s) 513, 543, 831, 861
Bsc4I CCNNNNNNNGG 2 cut(s) 294, 635
Bse1I ACTGG 5 cut(s) 328, 575, 1154, 1249, 1556
Bse3DI GCAATG 2 cut(s) 553, 1255
BseBI CCWGG 4 cut(s) 295, 506, 927, 1577
BseDI CCNNGG 2 cut(s) 293, 926
BseGI GGATG 5 cut(s) 232, 317, 367, 454, 625
BseLI CCNNNNNNNGG 2 cut(s) 294, 635
BseMI GCAATG 2 cut(s) 553, 1255
BseMII CTCAG 3 cut(s) 556, 1002, 1284
BseNI ACTGG 5 cut(s) 328, 575, 1154, 1249, 1556
BseRI GAGGAG 2 cut(s) 72, 1289
BseSI GKGCMC 1 cut(s) 1171
BseXI GCAGC 3 cut(s) 352, 1421, 1567
BseYI CCCAGC 2 cut(s) 113, 1090
Bsh1236I CGCG 2 cut(s) 306, 633
BshFI GGCC 3 cut(s) 574, 1036, 1161
BsiHKAI GWGCWC 2 cut(s) 64, 1171
BslFI GGGAC 6 cut(s) 290, 581, 587, 944, 963, 1228
BslI CCNNNNNNNGG 2 cut(s) 294, 635
BsmAI GTCTC 3 cut(s) 775, 851, 863
BsmFI GGGAC 6 cut(s) 290, 581, 587, 944, 963, 1228
BsnI GGCC 3 cut(s) 574, 1036, 1161
Bso31I GGTCTC 1 cut(s) 863
Bsp1286I GDGCHC 2 cut(s) 64, 1171
Bsp143I GATC 4 cut(s) 438, 501, 895, 1446
Bsp68I TCGCGA 1 cut(s) 306
BspACI CCGC 3 cut(s) 251, 633, 1363
BspANI GGCC 3 cut(s) 574, 1036, 1161
BspCNI CTCAG 3 cut(s) 555, 1003, 1283
BspFNI CGCG 2 cut(s) 306, 633
BspLI GGNNCC 1 cut(s) 932
BspMI ACCTGC 1 cut(s) 217
BspPI GGATC 1 cut(s) 496
BspQI GCTCTTC 2 cut(s) 1304, 1545
BspTNI GGTCTC 1 cut(s) 863
BsrBI CCGCTC 1 cut(s) 251
BsrDI GCAATG 2 cut(s) 553, 1255
BsrI ACTGG 5 cut(s) 328, 575, 1154, 1249, 1556
BssECI CCNNGG 2 cut(s) 293, 926
BssMI GATC 4 cut(s) 438, 501, 895, 1446
BssSI CACGAG 1 cut(s) 585
Bst2BI CACGAG 1 cut(s) 585
Bst2UI CCWGG 4 cut(s) 295, 506, 927, 1577
Bst4CI ACNGT 4 cut(s) 45, 797, 845, 1515
Bst6I CTCTTC 2 cut(s) 1304, 1545
BstC8I GCNNGC 2 cut(s) 7, 989
BstDEI CTNAG 4 cut(s) 542, 612, 1011, 1270
BstENI CCTNNNNNAGG 1 cut(s) 292
BstF5I GGATG 5 cut(s) 232, 317, 367, 454, 625
BstFNI CGCG 2 cut(s) 306, 633
BstH2I RGCGCY 1 cut(s) 470
BstHHI GCGC 1 cut(s) 469
BstKTI GATC 4 cut(s) 441, 504, 898, 1449
BstMAI GTCTC 3 cut(s) 775, 851, 863
BstMBI GATC 4 cut(s) 438, 501, 895, 1446
BstMWI GCNNNNNNNGC 3 cut(s) 312, 374, 1552
BstNI CCWGG 4 cut(s) 295, 506, 927, 1577
BstNSI RCATGY 1 cut(s) 91
BstSCI CCNGG 4 cut(s) 293, 504, 925, 1575
BstSLI GKGCMC 1 cut(s) 1171
BstUI CGCG 2 cut(s) 306, 633
BstV1I GCAGC 3 cut(s) 352, 1421, 1567
BstV2I GAAGAC 1 cut(s) 1328
BstXI CCANNNNNNTGG 1 cut(s) 323
BsuRI GGCC 3 cut(s) 574, 1036, 1161
BtsCI GGATG 5 cut(s) 232, 317, 367, 454, 625
BtuMI TCGCGA 1 cut(s) 306
BveI ACCTGC 1 cut(s) 217
Cac8I GCNNGC 2 cut(s) 7, 989
CaiI CAGNNNCTG 1 cut(s) 785
CfoI GCGC 1 cut(s) 469
Cfr13I GGNCC 4 cut(s) 134, 878, 931, 1160
Csp6I GTAC 1 cut(s) 1462
CspCI CAANNNNNGTGG 2 cut(s) 1089, 1124
CviAII CATG 5 cut(s) 88, 433, 664, 1231, 1301
CviQI GTAC 1 cut(s) 1462
DdeI CTNAG 4 cut(s) 542, 612, 1011, 1270
DpnI GATC 4 cut(s) 440, 503, 897, 1448
DpnII GATC 4 cut(s) 438, 501, 895, 1446
DriI GACNNNNNGTC 1 cut(s) 1102
Eam1104I CTCTTC 2 cut(s) 1304, 1545
Eam1105I GACNNNNNGTC 1 cut(s) 1102
EarI CTCTTC 2 cut(s) 1304, 1545
Eco147I AGGCCT 1 cut(s) 1036
Eco31I GGTCTC 1 cut(s) 863
Eco32I GATATC 1 cut(s) 694
Eco47I GGWCC 3 cut(s) 134, 878, 931
Eco47III AGCGCT 1 cut(s) 468
Eco57I CTGAAG 2 cut(s) 213, 965
EcoNI CCTNNNNNAGG 1 cut(s) 292
EcoO109I RGGNCCY 1 cut(s) 931
EcoRI GAATTC 1 cut(s) 788
EcoRII CCWGG 4 cut(s) 293, 504, 925, 1575
EcoRV GATATC 1 cut(s) 694
EcoT22I ATGCAT 1 cut(s) 627
FaeI CATG 5 cut(s) 91, 436, 667, 1234, 1304
FalI AAGNNNNNCTT 4 cut(s) 365, 397, 1386, 1418
FaqI GGGAC 6 cut(s) 290, 581, 587, 944, 963, 1228
FatI CATG 5 cut(s) 87, 432, 663, 1230, 1300
FauI CCCGC 1 cut(s) 626
FblI GTMKAC 1 cut(s) 1137
Fnu4HI GCNGC 3 cut(s) 366, 1435, 1581
FokI GGATG 5 cut(s) 219, 324, 374, 461, 612
Fsp4HI GCNGC 3 cut(s) 366, 1435, 1581
FspBI CTAG 3 cut(s) 177, 576, 1505
GlaI GCGC 1 cut(s) 468
GluI GCNGC 3 cut(s) 366, 1435, 1581
GsaI CCCAGC 2 cut(s) 117, 1094
GsuI CTGGAG 2 cut(s) 447, 540
HaeII RGCGCY 1 cut(s) 470
HaeIII GGCC 3 cut(s) 574, 1036, 1161
HhaI GCGC 1 cut(s) 469
Hin1II CATG 5 cut(s) 91, 436, 667, 1234, 1304
Hin6I GCGC 1 cut(s) 467
HinP1I GCGC 1 cut(s) 467
HindIII AAGCTT 2 cut(s) 121, 1067
HinfI GANTC 4 cut(s) 74, 905, 1216, 1399
HphI GGTGA 2 cut(s) 1106, 1537
Hpy166II GTNNAC 2 cut(s) 1138, 1169
Hpy188III TCNNGA 8 cut(s) 191, 305, 519, 753, 978, 1084, 1220, 1475
Hpy8I GTNNAC 2 cut(s) 1138, 1169
HpyCH4III ACNGT 4 cut(s) 45, 797, 845, 1515
HpyCH4IV ACGT 2 cut(s) 260, 487
HpyCH4V TGCA 7 cut(s) 226, 232, 625, 1169, 1230, 1393, 1583
HpyF10VI GCNNNNNNNGC 3 cut(s) 312, 374, 1552
HpyF3I CTNAG 4 cut(s) 542, 612, 1011, 1270
HpySE526I ACGT 2 cut(s) 260, 487
Hsp92II CATG 5 cut(s) 91, 436, 667, 1234, 1304
HspAI GCGC 1 cut(s) 467
Kzo9I GATC 4 cut(s) 438, 501, 895, 1446
LguI GCTCTTC 2 cut(s) 1304, 1545
LmnI GCTCC 4 cut(s) 59, 103, 248, 466
Lsp1109I GCAGC 3 cut(s) 352, 1421, 1567
LweI GCATC 5 cut(s) 241, 302, 352, 634, 801
MaeI CTAG 3 cut(s) 177, 576, 1505
MaeII ACGT 2 cut(s) 260, 487
MaeIII GTNAC 4 cut(s) 638, 837, 1094, 1525
MalI GATC 4 cut(s) 440, 503, 897, 1448
MbiI CCGCTC 1 cut(s) 251
MboI GATC 4 cut(s) 438, 501, 895, 1446
MhlI GDGCHC 2 cut(s) 64, 1171
MluCI AATT 7 cut(s) 240, 336, 788, 885, 962, 1353, 1375
MlyI GAGTC 1 cut(s) 1210
MmeI TCCRAC 2 cut(s) 125, 1400
Mph1103I ATGCAT 1 cut(s) 627
MroXI GAANNNNTTC 1 cut(s) 1025
MseI TTAA 6 cut(s) 243, 282, 330, 620, 806, 1497
MslI CAYNNNNRTG 1 cut(s) 678
MspR9I CCNGG 4 cut(s) 295, 506, 927, 1577
MvaI CCWGG 4 cut(s) 295, 506, 927, 1577
MvnI CGCG 2 cut(s) 306, 633
MwoI GCNNNNNNNGC 3 cut(s) 312, 374, 1552
NdeII GATC 4 cut(s) 438, 501, 895, 1446
NlaIII CATG 5 cut(s) 91, 436, 667, 1234, 1304
NlaIV GGNNCC 1 cut(s) 932
NmuCI GTSAC 4 cut(s) 638, 837, 1094, 1525
NruI TCGCGA 1 cut(s) 306
NsiI ATGCAT 1 cut(s) 627
NspI RCATGY 1 cut(s) 91
PaqCI CACCTGC 1 cut(s) 217
PceI AGGCCT 1 cut(s) 1036
PciSI GCTCTTC 2 cut(s) 1304, 1545
PdmI GAANNNNTTC 1 cut(s) 1025
PfeI GAWTC 3 cut(s) 74, 905, 1399
PkrI GCNGC 3 cut(s) 367, 1436, 1582
PleI GAGTC 1 cut(s) 1210
PpsI GAGTC 1 cut(s) 1210
PpuMI RGGWCCY 1 cut(s) 931
Psp5II RGGWCCY 1 cut(s) 931
Psp6I CCWGG 4 cut(s) 293, 504, 925, 1575
PspFI CCCAGC 2 cut(s) 113, 1090
PspGI CCWGG 4 cut(s) 293, 504, 925, 1575
PspN4I GGNNCC 1 cut(s) 932
PspPI GGNCC 4 cut(s) 134, 878, 931, 1160
PspPPI RGGWCCY 1 cut(s) 931
PsrI GAACNNNNNNTAC 2 cut(s) 1046, 1078
PstNI CAGNNNCTG 1 cut(s) 785
RruI TCGCGA 1 cut(s) 306
RsaI GTAC 1 cut(s) 1463
RsaNI GTAC 1 cut(s) 1462
RseI CAYNNNNRTG 1 cut(s) 678
SapI GCTCTTC 2 cut(s) 1304, 1545
SaqAI TTAA 6 cut(s) 243, 282, 330, 620, 806, 1497
SatI GCNGC 3 cut(s) 366, 1435, 1581
Sau3AI GATC 4 cut(s) 438, 501, 895, 1446
Sau96I GGNCC 4 cut(s) 134, 878, 931, 1160
SchI GAGTC 1 cut(s) 1210
ScrFI CCNGG 4 cut(s) 295, 506, 927, 1577
SduI GDGCHC 2 cut(s) 64, 1171
SfaNI GCATC 5 cut(s) 241, 302, 352, 634, 801
SinI GGWCC 3 cut(s) 134, 878, 931
SmiMI CAYNNNNRTG 1 cut(s) 678
SmlI CTYRAG 2 cut(s) 751, 1218
SmoI CTYRAG 2 cut(s) 751, 1218
Sse9I AATT 7 cut(s) 240, 336, 788, 885, 962, 1353, 1375
SseBI AGGCCT 1 cut(s) 1036
SsiI CCGC 3 cut(s) 251, 633, 1363
SspMI CTAG 3 cut(s) 177, 576, 1505
StuI AGGCCT 1 cut(s) 1036
StyD4I CCNGG 4 cut(s) 293, 504, 925, 1575
TaaI ACNGT 4 cut(s) 45, 797, 845, 1515
TaiI ACGT 2 cut(s) 263, 490
TasI AATT 7 cut(s) 240, 336, 788, 885, 962, 1353, 1375
TfiI GAWTC 3 cut(s) 74, 905, 1399
Tru1I TTAA 6 cut(s) 243, 282, 330, 620, 806, 1497
Tru9I TTAA 6 cut(s) 243, 282, 330, 620, 806, 1497
TseFI GTSAC 4 cut(s) 638, 837, 1094, 1525
TseI GCWGC 3 cut(s) 365, 1434, 1580
Tsp45I GTSAC 4 cut(s) 638, 837, 1094, 1525
TspDTI ATGAA 7 cut(s) 461, 522, 652, 717, 879, 918, 1245
TspGWI ACGGA 2 cut(s) 176, 1333
VneI GTGCAC 1 cut(s) 1167
VpaK11BI GGWCC 3 cut(s) 134, 878, 931
XagI CCTNNNNNAGG 1 cut(s) 292
XapI RAATTY 2 cut(s) 788, 1375
XceI RCATGY 1 cut(s) 91
XmiI GTMKAC 1 cut(s) 1137
XmnI GAANNNNTTC 1 cut(s) 1025
XspI CTAG 3 cut(s) 177, 576, 1505
Zsp2I ATGCAT 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.