FvH4_2g05850

NYN domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013466
Physical Location & Seq
Reverse (-)
4856870 .. 4860236
3367 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g05850.t2

Sequence Viewer

Length: 1581 bp
ATGGCTTGCCAAAATACATCAACATCAATTGTGCCTTCAGACCCCTCCGATCAAAGAGGTTCTTACATGCTAGATGCAAACATGAACGCACTTCAAGCTCCAATGAACCAGCCAATCCGAAGCTCCGCTGAAGGTCCTGTTGCTATCCTCTGGGATATTGAAAACTGCCCTGTGCCAAGTGATGTTCGTCCTGAAGATGTAGCTGGTAACATCAGAATGGCTTTGCAAGTACATCCTGTAATTAAAGGAGCTGTTGTTACGTTTGCTGCATATGGGGACTTCAATGCCTTCCCCAGGCGGCTCCGCGAGGGATGTCAGAGAACTGGTGTTAAACTCGTTGATGTACCAAATGGAAGAAAGGATGCTGCTGACAAGGCCATCTTGGTTGATATGTTCCTGTTTGCTCTTGACAATCCTCCACCATCTTCCATCATGCTGATCTCTGGGGATGTTGATTTTGCTCCAGCACTCCATATACTTGGGCAACGTGGGTACACAGTGATTCTAGTAATACCTTCTGGAGTGGGCGTTTCATCTGCTCTCAGCAATGCTGGTAAGTTTGTGTGGGACTGGTCTAGCGTAGCTCGTGGGGAAGGCTTTGTGCCTACAACTAAGTTTCTAATGCATCCTCGTGGGGGACAAGCTGATATTACTGGCTATTTCATGGGTTGCCATATTAATGATCATATGGATAGCCAAACTGAGGATGAAGCTATTTTATACAGGGGGATCTCACAAAGCTATTACAATTCAAGAGATTTTTCAATAGTGTCACAATCTATGTCTGAATATAACAGTAGTTCCTTATTGATGCCTGGCGGCGCGTCGAGATCACACAGTCTCCCATCAGGTCTTAATGAAGTTCCTGCTGGACCTAGTAGTTCTGCCGATCAAAATGGATCTGCTTGGTGGGTTCAACCAGGGGACCTTAATGGTCTTAGGGGACAGCTTGAGAAGTTGCTTGAACTTTCTGGAGGTTGCATGCCTCTTACTCGAGTTCCTTCCGAGTATCTGAAAGTTTTTGGAAGACCTCTTTATGTATCGGAGTATGGTGCATTTAAGCTTGTTAATCTGTTTAAGAAGTTGGGTGACACAATAGTTGTAGATGGTAAAGGGCAAAAGAAATTTGTCTACCTCCGAAACTGGAAACCAAGCCCTTTGATTTCAACTGGGAAGGATAATAGTAGGAAAGGGAAGGGGACTCAGGAAGAGAGTATGGCTATTATTACAGGTAATGGCTCATCAGAAGAGTTCTCAGAGGAGGAAAGAGTAGTTTTAGAAGAACATGATGACAGGAGTCAAGGACAGACCAATTTGAGAACAACAGGTAAATGTGAAATTGATGACCATGACCTTGAGCACTTCAAATATGAGTTGCAGGAGATTCTTGTTAGCTACTCTTGTGGGATTTTTTTGGGTTGTTTTGAGGCGATCTACCAGCAAAGGTACAAAAAACCATTGGACTGTCAAAAGTTTGGTGTTGATCAACTAGAGGAGCTGTTTGAGAGGCTGACTGATGTGGTGGTGTTGCTTGAAGAACCTGTTAGCAAGCAAAAGTTCCTGGCTGCAAGTGGTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NYN OST-HTH

Protein Analysis

527

Amino Acids

57.69

Weight (kDa)

5.18

Isoelectric Point (pI)

47.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NYN PF01936 47 - 184 4.4e-27 NYN domain
OST-HTH PF12872 312 - 377 5.5e-09 OST-HTH/LOTUS domain
OST-HTH PF12872 452 - 512 3.6e-06 OST-HTH/LOTUS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013466)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15560 AT2G15560
fragaria_vesca FvH4_2g05850 FvH4_2g05850
malus_domestica MD05G1082600.v1.1
prunus_persica Prupe.8G127000_v2.0.a1 Prupe.8G127000_v2.0.a1 Prupe.8G127000_v2.0.a1
pyrus_communis pycom05g07760
rosa_chinensis RchiOBHm_Chr6g0257731
rosa_laevigata RLG00000014719
rosa_multiflora Rmu_sc0011315.1_g000007
rosa_roxburghii Rroxscaffold_7G00208910
rosa_samantha Rh6AG085400 Rh6BG079700 Rh6CG074700 Rh6DG071600
rosa_wichuraiana Rw6G007670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1131
AccII CGCG 2 cut(s) 306, 824
AciI CCGC 4 cut(s) 126, 298, 304, 819
AclWI GGATC 2 cut(s) 737, 907
AcsI RAATTY 1 cut(s) 1124
AcuI CTGAAG 3 cut(s) 21, 150, 213
AfaI GTAC 4 cut(s) 231, 345, 494, 1448
AfiI CCNNNNNNNGG 3 cut(s) 294, 635, 703
AjnI CCWGG 4 cut(s) 293, 814, 919, 1560
Alw21I GWGCWC 1 cut(s) 1362
Alw26I GTCTC 1 cut(s) 845
AlwI GGATC 2 cut(s) 737, 907
Ama87I CYCGRG 1 cut(s) 993
AoxI GGCC 1 cut(s) 375
ApeKI GCWGC 3 cut(s) 266, 365, 1565
ApoI RAATTY 1 cut(s) 1124
AseI ATTAAT 1 cut(s) 678
AspLEI GCGC 1 cut(s) 824
AspS9I GGNCC 3 cut(s) 134, 872, 925
AsuHPI GGTGA 1 cut(s) 1100
AvaI CYCGRG 1 cut(s) 993
AvaII GGWCC 3 cut(s) 134, 872, 925
BauI CACGAG 2 cut(s) 585, 630
BbsI GAAGAC 1 cut(s) 1033
Bbv12I GWGCWC 1 cut(s) 1362
BbvI GCAGC 3 cut(s) 253, 352, 1552
BccI CCATC 5 cut(s) 386, 430, 437, 853, 1100
BciT130I CCWGG 4 cut(s) 295, 816, 921, 1562
BclI TGATCA 2 cut(s) 682, 1483
BcoDI GTCTC 1 cut(s) 845
BfaI CTAG 5 cut(s) 71, 506, 576, 876, 1490
BisI GCNGC 5 cut(s) 267, 299, 366, 820, 1566
BlsI GCNGC 5 cut(s) 268, 300, 367, 821, 1567
Bme1390I CCNGG 4 cut(s) 295, 816, 921, 1562
Bme18I GGWCC 3 cut(s) 134, 872, 925
BmeT110I CYCGRG 1 cut(s) 993
BmgT120I GGNCC 3 cut(s) 134, 872, 925
BmiI GGNNCC 2 cut(s) 302, 926
BmrFI CCNGG 4 cut(s) 295, 816, 921, 1562
BmrI ACTGGG 1 cut(s) 1179
BmsI GCATC 4 cut(s) 64, 352, 634, 801
BmuI ACTGGG 1 cut(s) 1179
BoxI GACNNNNGTC 1 cut(s) 1296
BpiI GAAGAC 1 cut(s) 1033
BpmI CTGGAG 3 cut(s) 447, 540, 993
BpuEI CTTGAG 2 cut(s) 971, 1376
BsaJI CCNNGG 2 cut(s) 293, 920
BsaXI ACNNNNNCTCC 6 cut(s) 240, 270, 513, 543, 825, 855
Bsc4I CCNNNNNNNGG 3 cut(s) 294, 635, 703
Bse1I ACTGG 5 cut(s) 328, 575, 658, 1148, 1174
Bse3DI GCAATG 1 cut(s) 553
BseBI CCWGG 4 cut(s) 295, 816, 921, 1562
BseDI CCNNGG 2 cut(s) 293, 920
BseGI GGATG 6 cut(s) 232, 317, 367, 454, 625, 712
BseLI CCNNNNNNNGG 3 cut(s) 294, 635, 703
BseMI GCAATG 1 cut(s) 553
BseMII CTCAG 4 cut(s) 556, 693, 1217, 1269
BseNI ACTGG 5 cut(s) 328, 575, 658, 1148, 1174
BseRI GAGGAG 2 cut(s) 1274, 1508
BseXI GCAGC 3 cut(s) 253, 352, 1552
Bsh1236I CGCG 2 cut(s) 306, 824
BshFI GGCC 1 cut(s) 377
BsiHKAI GWGCWC 1 cut(s) 1362
BsiHKCI CYCGRG 1 cut(s) 993
BslFI GGGAC 6 cut(s) 290, 581, 651, 938, 957, 1213
BslI CCNNNNNNNGG 3 cut(s) 294, 635, 703
BsmAI GTCTC 1 cut(s) 845
BsmFI GGGAC 6 cut(s) 290, 581, 651, 938, 957, 1213
BsnI GGCC 1 cut(s) 377
BsoBI CYCGRG 1 cut(s) 993
Bsp1286I GDGCHC 1 cut(s) 1362
Bsp143I GATC 9 cut(s) 49, 438, 682, 729, 830, 889, 899, 1431, 1483
BspACI CCGC 4 cut(s) 126, 298, 304, 819
BspANI GGCC 1 cut(s) 377
BspCNI CTCAG 4 cut(s) 555, 694, 1216, 1268
BspFNI CGCG 2 cut(s) 306, 824
BspLI GGNNCC 2 cut(s) 302, 926
BspPI GGATC 2 cut(s) 737, 907
BsrDI GCAATG 1 cut(s) 553
BsrI ACTGG 5 cut(s) 328, 575, 658, 1148, 1174
BssECI CCNNGG 2 cut(s) 293, 920
BssMI GATC 9 cut(s) 49, 438, 682, 729, 830, 889, 899, 1431, 1483
BssSI CACGAG 2 cut(s) 585, 630
Bst2BI CACGAG 2 cut(s) 585, 630
Bst2UI CCWGG 4 cut(s) 295, 816, 921, 1562
Bst4CI ACNGT 4 cut(s) 499, 797, 839, 1466
Bst6I CTCTTC 2 cut(s) 1203, 1242
BstC8I GCNNGC 3 cut(s) 7, 983, 1550
BstDEI CTNAG 6 cut(s) 542, 612, 702, 938, 1203, 1255
BstENI CCTNNNNNAGG 1 cut(s) 292
BstF5I GGATG 6 cut(s) 232, 317, 367, 454, 625, 712
BstFNI CGCG 2 cut(s) 306, 824
BstHHI GCGC 1 cut(s) 824
BstKTI GATC 9 cut(s) 52, 441, 685, 732, 833, 892, 902, 1434, 1486
BstMAI GTCTC 1 cut(s) 845
BstMBI GATC 9 cut(s) 49, 438, 682, 729, 830, 889, 899, 1431, 1483
BstMWI GCNNNNNNNGC 2 cut(s) 95, 374
BstNI CCWGG 4 cut(s) 295, 816, 921, 1562
BstNSI RCATGY 2 cut(s) 70, 985
BstPAI GACNNNNGTC 1 cut(s) 1296
BstSCI CCNGG 4 cut(s) 293, 814, 919, 1560
BstUI CGCG 2 cut(s) 306, 824
BstV1I GCAGC 3 cut(s) 253, 352, 1552
BstV2I GAAGAC 1 cut(s) 1033
BstX2I RGATCY 2 cut(s) 729, 899
BstXI CCANNNNNNTGG 1 cut(s) 479
BstYI RGATCY 2 cut(s) 729, 899
BsuRI GGCC 1 cut(s) 377
BtsCI GGATG 6 cut(s) 232, 317, 367, 454, 625, 712
BtsIMutI CAGTG 1 cut(s) 504
Cac8I GCNNGC 3 cut(s) 7, 983, 1550
CfoI GCGC 1 cut(s) 824
Cfr13I GGNCC 3 cut(s) 134, 872, 925
CseI GACGC 1 cut(s) 813
Csp6I GTAC 4 cut(s) 230, 344, 493, 1447
CviAII CATG 7 cut(s) 67, 82, 433, 664, 982, 1286, 1349
CviQI GTAC 4 cut(s) 230, 344, 493, 1447
DdeI CTNAG 6 cut(s) 542, 612, 702, 938, 1203, 1255
DpnI GATC 9 cut(s) 51, 440, 684, 731, 832, 891, 901, 1433, 1485
DpnII GATC 9 cut(s) 49, 438, 682, 729, 830, 889, 899, 1431, 1483
Eam1104I CTCTTC 2 cut(s) 1203, 1242
EarI CTCTTC 2 cut(s) 1203, 1242
Eco47I GGWCC 3 cut(s) 134, 872, 925
Eco57I CTGAAG 3 cut(s) 21, 150, 213
Eco88I CYCGRG 1 cut(s) 993
EcoNI CCTNNNNNAGG 1 cut(s) 292
EcoO109I RGGNCCY 2 cut(s) 134, 925
EcoRII CCWGG 4 cut(s) 293, 814, 919, 1560
EcoT22I ATGCAT 1 cut(s) 627
FaeI CATG 7 cut(s) 70, 85, 436, 667, 985, 1289, 1352
FalI AAGNNNNNCTT 4 cut(s) 46, 78, 365, 397
FaqI GGGAC 6 cut(s) 290, 581, 651, 938, 957, 1213
FatI CATG 7 cut(s) 66, 81, 432, 663, 981, 1285, 1348
FauNDI CATATG 2 cut(s) 271, 687
FbaI TGATCA 2 cut(s) 682, 1483
FblI GTMKAC 1 cut(s) 1131
Fnu4HI GCNGC 5 cut(s) 267, 299, 366, 820, 1566
FokI GGATG 6 cut(s) 219, 324, 374, 461, 612, 719
Fsp4HI GCNGC 5 cut(s) 267, 299, 366, 820, 1566
FspBI CTAG 5 cut(s) 71, 506, 576, 876, 1490
GlaI GCGC 1 cut(s) 823
GluI GCNGC 5 cut(s) 267, 299, 366, 820, 1566
GsuI CTGGAG 3 cut(s) 447, 540, 993
HaeIII GGCC 1 cut(s) 377
HgaI GACGC 1 cut(s) 813
HhaI GCGC 1 cut(s) 824
Hin1II CATG 7 cut(s) 70, 85, 436, 667, 985, 1289, 1352
Hin6I GCGC 1 cut(s) 822
HinP1I GCGC 1 cut(s) 822
HindIII AAGCTT 1 cut(s) 1061
HinfI GANTC 4 cut(s) 502, 1201, 1297, 1384
HphI GGTGA 1 cut(s) 1100
Hpy166II GTNNAC 2 cut(s) 495, 1132
Hpy188III TCNNGA 7 cut(s) 191, 407, 519, 753, 828, 972, 1205
Hpy8I GTNNAC 2 cut(s) 495, 1132
Hpy99I CGWCG 1 cut(s) 829
HpyAV CCTTC 8 cut(s) 45, 125, 298, 525, 587, 1011, 1168, 1189
HpyCH4III ACNGT 4 cut(s) 499, 797, 839, 1466
HpyCH4IV ACGT 2 cut(s) 260, 487
HpyCH4V TGCA 8 cut(s) 77, 226, 269, 625, 981, 1055, 1378, 1568
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 374
HpyF3I CTNAG 6 cut(s) 542, 612, 702, 938, 1203, 1255
HpySE526I ACGT 2 cut(s) 260, 487
Hsp92II CATG 7 cut(s) 70, 85, 436, 667, 985, 1289, 1352
HspAI GCGC 1 cut(s) 822
Ksp22I TGATCA 2 cut(s) 682, 1483
Kzo9I GATC 9 cut(s) 49, 438, 682, 729, 830, 889, 899, 1431, 1483
LmnI GCTCC 6 cut(s) 103, 128, 248, 306, 466, 1495
Lsp1109I GCAGC 3 cut(s) 253, 352, 1552
LweI GCATC 4 cut(s) 64, 352, 634, 801
MaeI CTAG 5 cut(s) 71, 506, 576, 876, 1490
MaeII ACGT 2 cut(s) 260, 487
MaeIII GTNAC 4 cut(s) 206, 256, 771, 1088
MalI GATC 9 cut(s) 51, 440, 684, 731, 832, 891, 901, 1433, 1485
MboI GATC 9 cut(s) 49, 438, 682, 729, 830, 889, 899, 1431, 1483
MboII GAAGA 8 cut(s) 206, 366, 417, 1038, 1220, 1259, 1292, 1547
MfeI CAATTG 1 cut(s) 27
MflI RGATCY 2 cut(s) 729, 899
MhlI GDGCHC 1 cut(s) 1362
MluCI AATT 6 cut(s) 27, 240, 748, 1124, 1312, 1338
MlyI GAGTC 2 cut(s) 1195, 1306
Mph1103I ATGCAT 1 cut(s) 627
MseI TTAA 8 cut(s) 243, 330, 678, 855, 930, 1059, 1068, 1077
MslI CAYNNNNRTG 3 cut(s) 215, 630, 678
MspA1I CMGCKG 1 cut(s) 128
MspR9I CCNGG 4 cut(s) 295, 816, 921, 1562
MunI CAATTG 1 cut(s) 27
MvaI CCWGG 4 cut(s) 295, 816, 921, 1562
MvnI CGCG 2 cut(s) 306, 824
MwoI GCNNNNNNNGC 2 cut(s) 95, 374
NdeI CATATG 2 cut(s) 271, 687
NdeII GATC 9 cut(s) 49, 438, 682, 729, 830, 889, 899, 1431, 1483
NlaIII CATG 7 cut(s) 70, 85, 436, 667, 985, 1289, 1352
NlaIV GGNNCC 2 cut(s) 302, 926
NmuCI GTSAC 2 cut(s) 771, 1088
NsiI ATGCAT 1 cut(s) 627
NspI RCATGY 2 cut(s) 70, 985
PaeI GCATGC 1 cut(s) 985
PaeR7I CTCGAG 1 cut(s) 993
PfeI GAWTC 2 cut(s) 502, 1384
PkrI GCNGC 5 cut(s) 268, 300, 367, 821, 1567
PleI GAGTC 2 cut(s) 1195, 1305
PpsI GAGTC 2 cut(s) 1195, 1305
PpuMI RGGWCCY 2 cut(s) 134, 925
PshAI GACNNNNGTC 1 cut(s) 1296
PshBI ATTAAT 1 cut(s) 678
Psp5II RGGWCCY 2 cut(s) 134, 925
Psp6I CCWGG 4 cut(s) 293, 814, 919, 1560
PspGI CCWGG 4 cut(s) 293, 814, 919, 1560
PspN4I GGNNCC 2 cut(s) 302, 926
PspPI GGNCC 3 cut(s) 134, 872, 925
PspPPI RGGWCCY 2 cut(s) 134, 925
PspXI VCTCGAGB 1 cut(s) 993
PsuI RGATCY 2 cut(s) 729, 899
RsaI GTAC 4 cut(s) 231, 345, 494, 1448
RsaNI GTAC 4 cut(s) 230, 344, 493, 1447
RseI CAYNNNNRTG 3 cut(s) 215, 630, 678
SaqAI TTAA 8 cut(s) 243, 330, 678, 855, 930, 1059, 1068, 1077
SatI GCNGC 5 cut(s) 267, 299, 366, 820, 1566
Sau3AI GATC 9 cut(s) 49, 438, 682, 729, 830, 889, 899, 1431, 1483
Sau96I GGNCC 3 cut(s) 134, 872, 925
SchI GAGTC 2 cut(s) 1195, 1306
ScrFI CCNGG 4 cut(s) 295, 816, 921, 1562
SduI GDGCHC 1 cut(s) 1362
SfaNI GCATC 4 cut(s) 64, 352, 634, 801
Sfr274I CTCGAG 1 cut(s) 993
SinI GGWCC 3 cut(s) 134, 872, 925
SlaI CTCGAG 1 cut(s) 993
SmiMI CAYNNNNRTG 3 cut(s) 215, 630, 678
SmlI CTYRAG 3 cut(s) 950, 993, 1355
SmoI CTYRAG 3 cut(s) 950, 993, 1355
SphI GCATGC 1 cut(s) 985
Sse9I AATT 6 cut(s) 27, 240, 748, 1124, 1312, 1338
SsiI CCGC 4 cut(s) 126, 298, 304, 819
SspMI CTAG 5 cut(s) 71, 506, 576, 876, 1490
StyD4I CCNGG 4 cut(s) 293, 814, 919, 1560
TaaI ACNGT 4 cut(s) 499, 797, 839, 1466
TaiI ACGT 2 cut(s) 263, 490
TaqI TCGA 2 cut(s) 827, 994
TasI AATT 6 cut(s) 27, 240, 748, 1124, 1312, 1338
TatI WGTACW 1 cut(s) 229
TauI GCSGC 2 cut(s) 301, 822
TfiI GAWTC 2 cut(s) 502, 1384
Tru1I TTAA 8 cut(s) 243, 330, 678, 855, 930, 1059, 1068, 1077
Tru9I TTAA 8 cut(s) 243, 330, 678, 855, 930, 1059, 1068, 1077
TscAI CASTG 1 cut(s) 504
TseFI GTSAC 2 cut(s) 771, 1088
TseI GCWGC 3 cut(s) 266, 365, 1565
Tsp45I GTSAC 2 cut(s) 771, 1088
TspDTI ATGAA 6 cut(s) 98, 119, 522, 652, 723, 873
TspRI CASTG 1 cut(s) 504
VpaK11BI GGWCC 3 cut(s) 134, 872, 925
VspI ATTAAT 1 cut(s) 678
XagI CCTNNNNNAGG 1 cut(s) 292
XapI RAATTY 1 cut(s) 1124
XceI RCATGY 2 cut(s) 70, 985
XhoI CTCGAG 1 cut(s) 993
XmiI GTMKAC 1 cut(s) 1131
XspI CTAG 5 cut(s) 71, 506, 576, 876, 1490
Zsp2I ATGCAT 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.