Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012119

Physical Location & Seq

Genomic Coordinates Reverse (-)

6983846 .. 6985620

Gene Structure 1775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G16070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGTGGGGATGGTTTTTGGTTTGTGGTGAACAGAATCTAAGGCAAAGACAACAATATGAGAAGCAACTGGCTCTCTCTGAGATTGATTACAGTAGGAAAATGTTGCTTGAGAAGCTTAAGGAGTACAAAGGGAAAGATTTTGAAGTGTTACGTGAGACTACGACTTTTGCTGGTGAAAGAGTTGATTATGAGAATGATCTTTTACTTCCTCCTTATCCTGTCCATCCTCCTCTCTCCCTTGGTTTAGATAATAATAATGGTTACCTATCTCACTTACCTTCGAAGAAGAAATCGGATGCGAATGGGTTCGGCTCAGGACATGTGAGGAACGAGGCAGAGGCGAAAAGTCCCAACGGAGGATCTGGAGGTTCGAGTCATGGGGTTATTCGCTTCTTAGGCTCTGTCGCAAAGATCGTGCTTCCAATCATCGGTGTTATCTCTCTATTGTCTGCATCAGGATATGGTCCAGAGATGAGGAAAAGAGGCGCTTCCTTGAACCTTTTTGGACTTCTCCCGCACCGAGCTACCAGAGGGAAGAGAACACCTAACCAATGTCCACCAGGGAAAGTTCTTGTGATTGAAGATGGAGAAGCACGGTGCCTTGTTAAGGAAAGAGTCGAAATACCATTTGACTCTGTTGTAGCGAAACGCGATGTAACTTACGGATACGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0016020 GO:0016021 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

224

Amino Acids

24.77

Weight (kDa)

9.17

Isoelectric Point (pI)

32.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16070 AT2G16070 AT2G16070
fragaria_vesca	FvH4_2g07780
malus_domestica	MD05G1071000.v1.1
prunus_persica	Prupe.8G107000_v2.0.a1
pyrus_communis	pycom05g06140 pycom10g06590
rosa_chinensis	RchiOBHm_Chr6g0262181
rosa_laevigata	RLG00000014450
rosa_multiflora	Rmu_co8439443.1_g000001 Rmu_sc0002510.1_g000018
rosa_roxburghii	Rroxscaffold_7G00207880
rosa_rugosa	Rorug05G0595400
rosa_samantha	Rh6AG115300 Rh6BG109400 Rh6CG106900 Rh6DG097400
rosa_wichuraiana	Rw6G010040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	597
AccII	CGCG	1 cut(s)	651
AciI	CCGC	1 cut(s)	515
AclWI	GGATC	1 cut(s)	367
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	3 cut(s)	356, 428, 607
AflII	CTTAAG	1 cut(s)	116
AflIII	ACRYGT	1 cut(s)	319
AgsI	TTSAA	3 cut(s)	143, 496, 581
AjnI	CCWGG	1 cut(s)	559
AluBI	AGCT	2 cut(s)	115, 524
AluI	AGCT	2 cut(s)	115, 524
Alw26I	GTCTC	1 cut(s)	149
AlwI	GGATC	1 cut(s)	367
Asp700I	GAANNNNTTC	1 cut(s)	305
AspLEI	GCGC	1 cut(s)	488
AspS9I	GGNCC	1 cut(s)	464
AsuHPI	GGTGA	2 cut(s)	38, 185
AsuII	TTCGAA	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	464
BanI	GGYRCC	1 cut(s)	597
BccI	CCATC	3 cut(s)	3, 231, 578
BciT130I	CCWGG	1 cut(s)	561
BciVI	GTATCC	1 cut(s)	659
BcoDI	GTCTC	1 cut(s)	149
BfoI	RGCGCY	1 cut(s)	489
BfrI	CTTAAG	1 cut(s)	116
BfuI	GTATCC	1 cut(s)	659
Bme1390I	CCNGG	1 cut(s)	561
Bme18I	GGWCC	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	1 cut(s)	599
BmrFI	CCNGG	1 cut(s)	561
BmsI	GCATC	2 cut(s)	286, 461
BpmI	CTGGAG	1 cut(s)	384
Bpu10I	CCTNAGC	1 cut(s)	313
Bpu14I	TTCGAA	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	128
BsaAI	YACGTR	1 cut(s)	152
BsaJI	CCNNGG	2 cut(s)	238, 560
Bsc4I	CCNNNNNNNGG	3 cut(s)	356, 428, 607
Bse1I	ACTGG	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	561
BseDI	CCNNGG	2 cut(s)	238, 560
BseGI	GGATG	3 cut(s)	14, 223, 301
BseLI	CCNNNNNNNGG	3 cut(s)	356, 428, 607
BseMII	CTCAG	2 cut(s)	69, 327
BseNI	ACTGG	1 cut(s)	72
BseRI	GAGGAG	1 cut(s)	219
Bsh1236I	CGCG	1 cut(s)	651
BshNI	GGYRCC	1 cut(s)	597
BslFI	GGGAC	1 cut(s)	333
BslI	CCNNNNNNNGG	3 cut(s)	356, 428, 607
BsmAI	GTCTC	1 cut(s)	149
BsmFI	GGGAC	1 cut(s)	333
Bsp119I	TTCGAA	1 cut(s)	281
Bsp143I	GATC	3 cut(s)	196, 359, 411
BspACI	CCGC	1 cut(s)	515
BspCNI	CTCAG	2 cut(s)	70, 326
BspFNI	CGCG	1 cut(s)	651
BspLI	GGNNCC	1 cut(s)	599
BspPI	GGATC	1 cut(s)	367
BspT104I	TTCGAA	1 cut(s)	281
BspT107I	GGYRCC	1 cut(s)	597
BspTI	CTTAAG	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	72
BssECI	CCNNGG	2 cut(s)	238, 560
BssMI	GATC	3 cut(s)	196, 359, 411
BssT1I	CCWWGG	1 cut(s)	238
Bst2UI	CCWGG	1 cut(s)	561
Bst4CI	ACNGT	3 cut(s)	92, 597, 671
Bst6I	CTCTTC	1 cut(s)	530
BstAFI	CTTAAG	1 cut(s)	116
BstBAI	YACGTR	1 cut(s)	152
BstBI	TTCGAA	1 cut(s)	281
BstDEI	CTNAG	4 cut(s)	38, 78, 313, 394
BstEII	GGTNACC	1 cut(s)	260
BstENI	CCTNNNNNAGG	1 cut(s)	605
BstF5I	GGATG	3 cut(s)	14, 223, 301
BstFNI	CGCG	1 cut(s)	651
BstH2I	RGCGCY	1 cut(s)	489
BstHHI	GCGC	1 cut(s)	488
BstKTI	GATC	3 cut(s)	199, 362, 414
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	3 cut(s)	196, 359, 411
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 396
BstNI	CCWGG	1 cut(s)	561
BstNSI	RCATGY	1 cut(s)	323
BstPI	GGTNACC	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	559
BstUI	CGCG	1 cut(s)	651
BstX2I	RGATCY	1 cut(s)	359
BstYI	RGATCY	1 cut(s)	359
BsuI	GTATCC	1 cut(s)	659
BtgZI	GCGATG	1 cut(s)	666
BtsCI	GGATG	3 cut(s)	14, 223, 301
CfoI	GCGC	1 cut(s)	488
Cfr13I	GGNCC	1 cut(s)	464
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	2 cut(s)	320, 377
CviJI	RGCY	5 cut(s)	71, 115, 312, 399, 524
CviKI_1	RGCY	5 cut(s)	71, 115, 312, 399, 524
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	4 cut(s)	38, 78, 313, 394
DpnI	GATC	3 cut(s)	198, 361, 413
DpnII	GATC	3 cut(s)	196, 359, 411
Eam1104I	CTCTTC	1 cut(s)	530
EarI	CTCTTC	1 cut(s)	530
Eco130I	CCWWGG	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	464
Eco91I	GGTNACC	1 cut(s)	260
EcoNI	CCTNNNNNAGG	1 cut(s)	605
EcoO65I	GGTNACC	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	559
EcoT14I	CCWWGG	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	2 cut(s)	323, 380
FaiI	YATR	5 cut(s)	57, 189, 321, 378, 462
FalI	AAGNNNNNCTT	2 cut(s)	472, 504
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	2 cut(s)	319, 376
FauI	CCCGC	1 cut(s)	522
FokI	GGATG	3 cut(s)	21, 210, 308
GlaI	GCGC	1 cut(s)	487
GsuI	CTGGAG	1 cut(s)	384
HaeII	RGCGCY	1 cut(s)	489
HhaI	GCGC	1 cut(s)	488
Hin1II	CATG	2 cut(s)	323, 380
Hin6I	GCGC	1 cut(s)	486
HinP1I	GCGC	1 cut(s)	486
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	4 cut(s)	34, 373, 615, 632
HphI	GGTGA	2 cut(s)	38, 185
Hpy166II	GTNNAC	2 cut(s)	29, 557
Hpy188I	TCNGA	2 cut(s)	79, 295
Hpy188III	TCNNGA	4 cut(s)	315, 363, 456, 467
Hpy8I	GTNNAC	2 cut(s)	29, 557
HpyAV	CCTTC	1 cut(s)	288
HpyCH4III	ACNGT	3 cut(s)	92, 597, 671
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	1 cut(s)	452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 396
HpyF3I	CTNAG	4 cut(s)	38, 78, 313, 394
HpySE526I	ACGT	1 cut(s)	151
Hsp92II	CATG	2 cut(s)	323, 380
HspAI	GCGC	1 cut(s)	486
Kzo9I	GATC	3 cut(s)	196, 359, 411
LweI	GCATC	2 cut(s)	286, 461
MaeII	ACGT	1 cut(s)	151
MaeIII	GTNAC	3 cut(s)	147, 260, 655
MalI	GATC	3 cut(s)	198, 361, 413
MboI	GATC	3 cut(s)	196, 359, 411
MboII	GAAGA	4 cut(s)	295, 298, 547, 593
MflI	RGATCY	1 cut(s)	359
MlyI	GAGTC	3 cut(s)	382, 624, 626
MroXI	GAANNNNTTC	1 cut(s)	305
MseI	TTAA	2 cut(s)	117, 606
MspCI	CTTAAG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	561
MvaI	CCWGG	1 cut(s)	561
MvnI	CGCG	1 cut(s)	651
MwoI	GCNNNNNNNGC	2 cut(s)	112, 396
NdeII	GATC	3 cut(s)	196, 359, 411
NlaIII	CATG	2 cut(s)	323, 380
NlaIV	GGNNCC	1 cut(s)	599
NspI	RCATGY	1 cut(s)	323
NspV	TTCGAA	1 cut(s)	281
PciI	ACATGT	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	1 cut(s)	411
PdmI	GAANNNNTTC	1 cut(s)	305
PfeI	GAWTC	1 cut(s)	34
PleI	GAGTC	3 cut(s)	381, 623, 626
PpsI	GAGTC	3 cut(s)	381, 623, 626
Ppu21I	YACGTR	1 cut(s)	152
PscI	ACATGT	1 cut(s)	319
Psp6I	CCWGG	1 cut(s)	559
PspEI	GGTNACC	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	559
PspN4I	GGNNCC	1 cut(s)	599
PspPI	GGNCC	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	359
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SaqAI	TTAA	2 cut(s)	117, 606
Sau3AI	GATC	3 cut(s)	196, 359, 411
Sau96I	GGNCC	1 cut(s)	464
SchI	GAGTC	3 cut(s)	382, 624, 626
ScrFI	CCNGG	1 cut(s)	561
SetI	ASST	8 cut(s)	117, 154, 267, 280, 370, 501, 526, 547
SfaNI	GCATC	2 cut(s)	286, 461
SfuI	TTCGAA	1 cut(s)	281
SinI	GGWCC	1 cut(s)	464
SmlI	CTYRAG	2 cut(s)	107, 116
SmoI	CTYRAG	2 cut(s)	107, 116
SsiI	CCGC	1 cut(s)	515
StyD4I	CCNGG	1 cut(s)	559
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	3 cut(s)	92, 597, 671
TaiI	ACGT	1 cut(s)	154
TaqI	TCGA	3 cut(s)	281, 371, 618
TatI	WGTACW	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	2 cut(s)	117, 606
Tru9I	TTAA	2 cut(s)	117, 606
TspGWI	ACGGA	1 cut(s)	369
Vha464I	CTTAAG	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	464
XagI	CCTNNNNNAGG	1 cut(s)	605
XceI	RCATGY	1 cut(s)	323
XmnI	GAANNNNTTC	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.