FvH4_2g07780

Plastid division protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012119
Physical Location & Seq
Reverse (-)
6711627 .. 6714518
2892 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g07780.t1

Sequence Viewer

Length: 843 bp
ATGGAGGAAGAGGGTATAGGGCTAGTTCTGACGAAAGCCACAGACCTGAGAATGAAGATCAGCAACTGCATCCACAAGGCCAATGACCCATCACCCAAAAAGGAAAATGGTGATTCGGGTGATGAAGATGGTGATGGTGAAGAAGAAGATGAAGAGTCACAGAGGCTTTTCAACATTTGCGATGCCCTTGAAGCCCTTGAGAATCAGCTCTCTAACTTACAGACTTTGCAACAACAGCAAAGGTATGAAAGAGAAGTCTCACTTGCTGAGATTGAAAGCAGCCGCAAGATGCTACTGGAAAAGATTAGAGAGTACAAAGGGAAAGATTTGGAAGTGATACATGAGGCCTCTGCCTTTGCTGGTGAAACAGTGGATCACAGTAATGATCTCTTGCTTCCTCCATATCCAAGCCGCTCTCCAAACACGTTTGTTAATGGCTATTTGCCACCTACACATAAGCCTCTACGAAATGGGGTCATCACCAATGATGCAACAAATGGAGCAAAGGAGAATTTGAGTGATACAGAGAGATCAAAAAACTCAGTAGGGTTGGGATCTTTCCTGAGCACAGCAGCCAAGACAGTGCTTACTGTTGTCGGTGTGGTATCTGTACTTAGCCTGTCCGGTTTTGGGCCTAAAATTGTGAGAAGTAATACTGCTTTCAATATATTAGGCTGTTTTAAGCAACCGCCAAATGAAGAAAAGAGATCAACTGTTGAATGCCCCCCTGGGAGAGTCCTTGTTCAGGAAGGTAGGAAGGCTCGATGTGTTGTGAAAGAAAGAGTTGAAGTTCCTTTCTCGTCAGTTGTTGCGAGACCTGATGTAAACTATGGCTGCGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Globin

Protein Analysis

281

Amino Acids

30.72

Weight (kDa)

5.18

Isoelectric Point (pI)

53.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012119)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16070 AT2G16070 AT2G16070
fragaria_vesca FvH4_2g07780
malus_domestica MD05G1071000.v1.1
prunus_persica Prupe.8G107000_v2.0.a1
pyrus_communis pycom05g06140 pycom10g06590
rosa_chinensis RchiOBHm_Chr6g0262181
rosa_laevigata RLG00000014450
rosa_multiflora Rmu_co8439443.1_g000001 Rmu_sc0002510.1_g000018
rosa_roxburghii Rroxscaffold_7G00207880
rosa_rugosa Rorug05G0595400
rosa_samantha Rh6AG115300 Rh6BG109400 Rh6CG106900 Rh6DG097400
rosa_wichuraiana Rw6G010040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 414
AciI CCGC 4 cut(s) 283, 412, 689, 837
AclWI GGATC 2 cut(s) 381, 562
AcsI RAATTY 1 cut(s) 511
AfaI GTAC 2 cut(s) 314, 612
AfiI CCNNNNNNNGG 2 cut(s) 630, 745
AflIII ACRYGT 1 cut(s) 423
AgsI TTSAA 6 cut(s) 172, 191, 275, 664, 719, 788
AjnI CCWGG 1 cut(s) 727
AluBI AGCT 1 cut(s) 208
AluI AGCT 1 cut(s) 208
Alw21I GWGCWC 1 cut(s) 569
Alw26I GTCTC 2 cut(s) 262, 808
AlwI GGATC 2 cut(s) 381, 562
AlwNI CAGNNNCTG 1 cut(s) 66
AoxI GGCC 3 cut(s) 78, 345, 632
ApeKI GCWGC 3 cut(s) 279, 572, 834
ApoI RAATTY 1 cut(s) 511
AspS9I GGNCC 1 cut(s) 632
AsuHPI GGTGA 7 cut(s) 84, 122, 131, 143, 149, 374, 472
Bbv12I GWGCWC 1 cut(s) 569
BbvI GCAGC 3 cut(s) 291, 584, 821
BccI CCATC 3 cut(s) 97, 122, 128
BciT130I CCWGG 1 cut(s) 729
BcoDI GTCTC 2 cut(s) 262, 808
BfaI CTAG 1 cut(s) 23
BisI GCNGC 5 cut(s) 280, 283, 412, 573, 835
BlsI GCNGC 5 cut(s) 281, 284, 413, 574, 836
Bme1390I CCNGG 1 cut(s) 729
BmgT120I GGNCC 1 cut(s) 632
BmrFI CCNGG 1 cut(s) 729
BmsI GCATC 4 cut(s) 78, 172, 279, 478
Bpu10I CCTNAGC 1 cut(s) 563
BpuEI CTTGAG 1 cut(s) 218
BsaI GGTCTC 1 cut(s) 808
BsaJI CCNNGG 2 cut(s) 727, 728
BsaWI WCCGGW 1 cut(s) 623
Bsc4I CCNNNNNNNGG 2 cut(s) 630, 745
Bse1I ACTGG 1 cut(s) 300
BseBI CCWGG 1 cut(s) 729
BseDI CCNNGG 2 cut(s) 727, 728
BseGI GGATG 1 cut(s) 69
BseLI CCNNNNNNNGG 2 cut(s) 630, 745
BseMII CTCAG 4 cut(s) 38, 258, 554, 555
BseNI ACTGG 1 cut(s) 300
BseXI GCAGC 3 cut(s) 291, 584, 821
BshFI GGCC 3 cut(s) 80, 347, 634
BsiHKAI GWGCWC 1 cut(s) 569
BsiSI CCGG 1 cut(s) 624
BslI CCNNNNNNNGG 2 cut(s) 630, 745
BsmAI GTCTC 2 cut(s) 262, 808
BsmI GAATGC 1 cut(s) 725
BsnI GGCC 3 cut(s) 80, 347, 634
Bso31I GGTCTC 1 cut(s) 808
Bsp1286I GDGCHC 1 cut(s) 569
Bsp143I GATC 6 cut(s) 57, 373, 385, 530, 554, 707
BspACI CCGC 4 cut(s) 283, 412, 689, 837
BspANI GGCC 3 cut(s) 80, 347, 634
BspCNI CTCAG 4 cut(s) 39, 259, 554, 555
BspPI GGATC 2 cut(s) 381, 562
BspTNI GGTCTC 1 cut(s) 808
BsrBI CCGCTC 1 cut(s) 414
BsrI ACTGG 1 cut(s) 300
BssECI CCNNGG 2 cut(s) 727, 728
BssMI GATC 6 cut(s) 57, 373, 385, 530, 554, 707
Bst2UI CCWGG 1 cut(s) 729
Bst4CI ACNGT 5 cut(s) 370, 380, 583, 592, 715
Bst6I CTCTTC 2 cut(s) 3, 147
BstDEI CTNAG 5 cut(s) 47, 267, 541, 563, 614
BstENI CCTNNNNNAGG 1 cut(s) 743
BstF5I GGATG 1 cut(s) 69
BstKTI GATC 6 cut(s) 60, 376, 388, 533, 557, 710
BstMAI GTCTC 2 cut(s) 262, 808
BstMBI GATC 6 cut(s) 57, 373, 385, 530, 554, 707
BstMWI GCNNNNNNNGC 2 cut(s) 191, 235
BstNI CCWGG 1 cut(s) 729
BstSCI CCNGG 1 cut(s) 727
BstV1I GCAGC 3 cut(s) 291, 584, 821
BstX2I RGATCY 1 cut(s) 554
BstYI RGATCY 1 cut(s) 554
BsuRI GGCC 3 cut(s) 80, 347, 634
BtgZI GCGATG 1 cut(s) 195
BtsCI GGATG 1 cut(s) 69
BtsIMutI CAGTG 2 cut(s) 375, 588
CaiI CAGNNNCTG 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 632
Csp6I GTAC 2 cut(s) 313, 611
CviAII CATG 1 cut(s) 341
CviQI GTAC 2 cut(s) 313, 611
DdeI CTNAG 5 cut(s) 47, 267, 541, 563, 614
DpnI GATC 6 cut(s) 59, 375, 387, 532, 556, 709
DpnII GATC 6 cut(s) 57, 373, 385, 530, 554, 707
Eam1104I CTCTTC 2 cut(s) 3, 147
EarI CTCTTC 2 cut(s) 3, 147
Eco147I AGGCCT 1 cut(s) 347
Eco31I GGTCTC 1 cut(s) 808
EcoNI CCTNNNNNAGG 1 cut(s) 743
EcoRII CCWGG 1 cut(s) 727
FaeI CATG 1 cut(s) 344
FaiI YATR 7 cut(s) 17, 246, 342, 403, 456, 668, 831
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FatI CATG 1 cut(s) 340
Fnu4HI GCNGC 5 cut(s) 280, 283, 412, 573, 835
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 5 cut(s) 280, 283, 412, 573, 835
FspBI CTAG 1 cut(s) 23
GluI GCNGC 5 cut(s) 280, 283, 412, 573, 835
HaeIII GGCC 3 cut(s) 80, 347, 634
HapII CCGG 1 cut(s) 624
Hin1II CATG 1 cut(s) 344
HinfI GANTC 4 cut(s) 113, 155, 202, 735
HpaII CCGG 1 cut(s) 624
HphI GGTGA 7 cut(s) 84, 122, 131, 143, 149, 374, 472
Hpy166II GTNNAC 1 cut(s) 826
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 2 cut(s) 562, 746
Hpy8I GTNNAC 1 cut(s) 826
HpyAV CCTTC 2 cut(s) 743, 751
HpyCH4III ACNGT 5 cut(s) 370, 380, 583, 592, 715
HpyCH4IV ACGT 1 cut(s) 425
HpyCH4V TGCA 3 cut(s) 69, 229, 491
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 235
HpyF3I CTNAG 5 cut(s) 47, 267, 541, 563, 614
HpySE526I ACGT 1 cut(s) 425
Hsp92II CATG 1 cut(s) 344
Kzo9I GATC 6 cut(s) 57, 373, 385, 530, 554, 707
LmnI GCTCC 1 cut(s) 500
Lsp1109I GCAGC 3 cut(s) 291, 584, 821
LweI GCATC 4 cut(s) 78, 172, 279, 478
MaeI CTAG 1 cut(s) 23
MaeII ACGT 1 cut(s) 425
MaeIII GTNAC 1 cut(s) 156
MalI GATC 6 cut(s) 59, 375, 387, 532, 556, 709
MbiI CCGCTC 1 cut(s) 414
MboI GATC 6 cut(s) 57, 373, 385, 530, 554, 707
MboII GAAGA 8 cut(s) 20, 67, 137, 152, 155, 158, 164, 710
MflI RGATCY 1 cut(s) 554
MhlI GDGCHC 1 cut(s) 569
MluCI AATT 2 cut(s) 511, 639
MlyI GAGTC 2 cut(s) 164, 744
MnlI CCTC 6 cut(s) 4, 156, 337, 358, 408, 471
MseI TTAA 2 cut(s) 432, 681
MslI CAYNNNNRTG 1 cut(s) 381
MspI CCGG 1 cut(s) 624
MspR9I CCNGG 1 cut(s) 729
Mva1269I GAATGC 1 cut(s) 725
MvaI CCWGG 1 cut(s) 729
MwoI GCNNNNNNNGC 2 cut(s) 191, 235
NdeII GATC 6 cut(s) 57, 373, 385, 530, 554, 707
NlaIII CATG 1 cut(s) 344
NmuCI GTSAC 1 cut(s) 156
PasI CCCWGGG 1 cut(s) 728
PceI AGGCCT 1 cut(s) 347
PctI GAATGC 1 cut(s) 725
PfeI GAWTC 2 cut(s) 113, 202
PkrI GCNGC 5 cut(s) 281, 284, 413, 574, 836
PleI GAGTC 2 cut(s) 163, 743
PpsI GAGTC 2 cut(s) 163, 743
Psp6I CCWGG 1 cut(s) 727
PspGI CCWGG 1 cut(s) 727
PspPI GGNCC 1 cut(s) 632
PstNI CAGNNNCTG 1 cut(s) 66
PsuI RGATCY 1 cut(s) 554
RsaI GTAC 2 cut(s) 314, 612
RsaNI GTAC 2 cut(s) 313, 611
RseI CAYNNNNRTG 1 cut(s) 381
SaqAI TTAA 2 cut(s) 432, 681
SatI GCNGC 5 cut(s) 280, 283, 412, 573, 835
Sau3AI GATC 6 cut(s) 57, 373, 385, 530, 554, 707
Sau96I GGNCC 1 cut(s) 632
SchI GAGTC 2 cut(s) 164, 744
ScrFI CCNGG 1 cut(s) 729
SduI GDGCHC 1 cut(s) 569
SetI ASST 7 cut(s) 48, 210, 245, 428, 451, 754, 820
SfaNI GCATC 4 cut(s) 78, 172, 279, 478
SmiMI CAYNNNNRTG 1 cut(s) 381
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 2 cut(s) 511, 639
SseBI AGGCCT 1 cut(s) 347
SsiI CCGC 4 cut(s) 283, 412, 689, 837
SspMI CTAG 1 cut(s) 23
StuI AGGCCT 1 cut(s) 347
StyD4I CCNGG 1 cut(s) 727
TaaI ACNGT 5 cut(s) 370, 380, 583, 592, 715
TaiI ACGT 1 cut(s) 428
TaqI TCGA 1 cut(s) 763
TasI AATT 2 cut(s) 511, 639
TatI WGTACW 2 cut(s) 312, 610
TauI GCSGC 2 cut(s) 285, 414
TfiI GAWTC 2 cut(s) 113, 202
Tru1I TTAA 2 cut(s) 432, 681
Tru9I TTAA 2 cut(s) 432, 681
TscAI CASTG 2 cut(s) 375, 588
TseFI GTSAC 1 cut(s) 156
TseI GCWGC 3 cut(s) 279, 572, 834
Tsp45I GTSAC 1 cut(s) 156
TspDTI ATGAA 5 cut(s) 68, 138, 165, 261, 711
TspRI CASTG 2 cut(s) 375, 588
XagI CCTNNNNNAGG 1 cut(s) 743
XapI RAATTY 1 cut(s) 511
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.