Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0012119

Physical Location & Seq

Genomic Coordinates Reverse (-)

8005512 .. 8009389

Gene Structure 3878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g06140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGAAGAAGAGGGCATTGGGTTGGTTCTGGGAAGAGCCACGGAGCTGAGATTGAAGATCAGTAACTGCATCCACAAAGGAAATCACTCACAACCCAAAAGAGAAAATGGAGTCCACGCCGACGGCAAAGCAGCAGACGAAGTAGAAGAAGAAAAAGAAGAAGAGGAAGTAGAAGAGGAAGAGGCACATAAGCTTTTCAACATCTGCGACGCCCTCGAATCCCTTGAGAACCAGCTTTCTTCCTTACAGGCATTACAACAGCAGCAAACGTATGAAAGGGAAGTTGCCCTTTCTGAGATTGAAAGCAGCCGCAAGATGCTAGTCGACAAGCTTAAAGAGTACAAAGGGGAGGATTTAGAAGTGTTACGTGAGGCTTCTGCTTTTGCAGGTGAAACAGTAGAACACAACAATGATCTTTTGCTTCCACCATATCCAAGCCGCTCTCCGCACACTCTTTCTCTACAAAATGGCTATTTACCACCCACACACAAGTTGATACGAAATGGGATAATCACCGGTGATCCAACAAATGAAGCAAAGAAGAATTCGAGCGAGATAGACAAGTTGCAGAACGGATCCAAAAAAAGGTTGGGATTTTTCCTAAGCACAGCAGCCAAGACTCTGCTTACTCTTGTTGGTGTGGCATCTGTATTACGCCTGTCTGGTTTTGGGCCTAAATTTGTGAGAAGTAATGTCACTTTCAAAATATCAGGCCTTTCTCAGCAACCACCAACTGAAGAAAAGAGATCAACCATTGAGTGCCCCCCTGGGAGAGTCCTTGCGGTGGAAGATGGGAAGGCTCGATGTGTTGTGAAAGAGAGAGTTGAAGTTCCCTTCTCTTCTGTTGTTGCAAGACCAGATGTAAACTTTGGGTGCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0016020 GO:0016021 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

294

Amino Acids

32.37

Weight (kDa)

5.46

Isoelectric Point (pI)

60.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16070 AT2G16070 AT2G16070
fragaria_vesca	FvH4_2g07780
malus_domestica	MD05G1071000.v1.1
prunus_persica	Prupe.8G107000_v2.0.a1
pyrus_communis	pycom05g06140 pycom10g06590
rosa_chinensis	RchiOBHm_Chr6g0262181
rosa_laevigata	RLG00000014450
rosa_multiflora	Rmu_co8439443.1_g000001 Rmu_sc0002510.1_g000018
rosa_roxburghii	Rroxscaffold_7G00207880
rosa_rugosa	Rorug05G0595400
rosa_samantha	Rh6AG115300 Rh6BG109400 Rh6CG106900 Rh6DG097400
rosa_wichuraiana	Rw6G010040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	377
Acc36I	ACCTGC	1 cut(s)	377
AccBSI	CCGCTC	1 cut(s)	441
AccI	GTMKAC	1 cut(s)	324
AciI	CCGC	5 cut(s)	310, 439, 446, 782, 876
AclWI	GGATC	3 cut(s)	515, 570, 583
AcsI	RAATTY	2 cut(s)	544, 677
AcuI	CTGAAG	1 cut(s)	756
AcyI	GRCGYC	1 cut(s)	210
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	2 cut(s)	585, 784
AgeI	ACCGGT	1 cut(s)	515
AgsI	TTSAA	5 cut(s)	55, 199, 302, 703, 827
AjnI	CCWGG	1 cut(s)	766
AjuI	GAANNNNNNNTTGG	1 cut(s)	32
AluBI	AGCT	4 cut(s)	46, 193, 235, 331
AluI	AGCT	4 cut(s)	46, 193, 235, 331
AlwI	GGATC	3 cut(s)	515, 570, 583
AlwNI	CAGNNNCTG	1 cut(s)	66
AoxI	GGCC	2 cut(s)	671, 712
ApeKI	GCWGC	4 cut(s)	131, 262, 306, 611
ApoI	RAATTY	2 cut(s)	544, 677
AsiGI	ACCGGT	1 cut(s)	515
AspS9I	GGNCC	1 cut(s)	671
AsuHPI	GGTGA	3 cut(s)	401, 505, 530
BaeGI	GKGCMC	1 cut(s)	764
BamHI	GGATCC	1 cut(s)	575
BbvI	GCAGC	4 cut(s)	143, 274, 318, 623
BccI	CCATC	1 cut(s)	785
BceAI	ACGGC	1 cut(s)	139
BciT130I	CCWGG	1 cut(s)	768
BfaI	CTAG	1 cut(s)	320
BfuAI	ACCTGC	1 cut(s)	377
BisI	GCNGC	6 cut(s)	132, 263, 307, 310, 439, 612
BlsI	GCNGC	6 cut(s)	133, 264, 308, 311, 440, 613
Bme1390I	CCNGG	1 cut(s)	768
BmgT120I	GGNCC	1 cut(s)	671
BmiI	GGNNCC	1 cut(s)	577
BmrFI	CCNGG	1 cut(s)	768
BmsI	GCATC	3 cut(s)	78, 306, 653
Bpu10I	CCTNAGC	1 cut(s)	602
BpuEI	CTTGAG	1 cut(s)	245
BsaAI	YACGTR	1 cut(s)	368
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	3 cut(s)	39, 766, 767
BsaWI	WCCGGW	1 cut(s)	515
Bsc4I	CCNNNNNNNGG	2 cut(s)	585, 784
Bse118I	RCCGGY	1 cut(s)	515
BseBI	CCWGG	1 cut(s)	768
BseDI	CCNNGG	3 cut(s)	39, 766, 767
BseGI	GGATG	1 cut(s)	69
BseLI	CCNNNNNNNGG	2 cut(s)	585, 784
BseMII	CTCAG	3 cut(s)	38, 285, 734
BseSI	GKGCMC	1 cut(s)	764
BseXI	GCAGC	4 cut(s)	143, 274, 318, 623
BshFI	GGCC	2 cut(s)	673, 714
BshTI	ACCGGT	1 cut(s)	515
BsiSI	CCGG	1 cut(s)	516
BslI	CCNNNNNNNGG	2 cut(s)	585, 784
BsnI	GGCC	2 cut(s)	673, 714
Bsp1286I	GDGCHC	1 cut(s)	764
Bsp143I	GATC	5 cut(s)	57, 412, 520, 575, 746
BspACI	CCGC	5 cut(s)	310, 439, 446, 782, 876
BspANI	GGCC	2 cut(s)	673, 714
BspCNI	CTCAG	3 cut(s)	39, 286, 733
BspLI	GGNNCC	1 cut(s)	577
BspMI	ACCTGC	1 cut(s)	377
BspPI	GGATC	3 cut(s)	515, 570, 583
BspQI	GCTCTTC	1 cut(s)	28
BsrBI	CCGCTC	1 cut(s)	441
BsrFI	RCCGGY	1 cut(s)	515
BssAI	RCCGGY	1 cut(s)	515
BssECI	CCNNGG	3 cut(s)	39, 766, 767
BssMI	GATC	5 cut(s)	57, 412, 520, 575, 746
BssNI	GRCGYC	1 cut(s)	210
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	1 cut(s)	397
Bst6I	CTCTTC	6 cut(s)	3, 28, 156, 168, 174, 844
BstACI	GRCGYC	1 cut(s)	210
BstBAI	YACGTR	1 cut(s)	368
BstDEI	CTNAG	4 cut(s)	47, 294, 602, 720
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	69
BstKTI	GATC	5 cut(s)	60, 415, 523, 578, 749
BstMBI	GATC	5 cut(s)	57, 412, 520, 575, 746
BstNI	CCWGG	1 cut(s)	768
BstSCI	CCNGG	1 cut(s)	766
BstSLI	GKGCMC	1 cut(s)	764
BstV1I	GCAGC	4 cut(s)	143, 274, 318, 623
BstX2I	RGATCY	1 cut(s)	575
BstYI	RGATCY	1 cut(s)	575
BsuRI	GGCC	2 cut(s)	673, 714
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	69
BveI	ACCTGC	1 cut(s)	377
CaiI	CAGNNNCTG	1 cut(s)	66
Cfr10I	RCCGGY	1 cut(s)	515
Cfr13I	GGNCC	1 cut(s)	671
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	340
CspAI	ACCGGT	1 cut(s)	515
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	4 cut(s)	47, 294, 602, 720
DpnI	GATC	5 cut(s)	59, 414, 522, 577, 748
DpnII	GATC	5 cut(s)	57, 412, 520, 575, 746
Eam1104I	CTCTTC	6 cut(s)	3, 28, 156, 168, 174, 844
EarI	CTCTTC	6 cut(s)	3, 28, 156, 168, 174, 844
Eco147I	AGGCCT	1 cut(s)	714
Eco57I	CTGAAG	1 cut(s)	756
EcoRI	GAATTC	1 cut(s)	544
EcoRII	CCWGG	1 cut(s)	766
FaiI	YATR	3 cut(s)	189, 273, 430
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	6 cut(s)	132, 263, 307, 310, 439, 612
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	6 cut(s)	132, 263, 307, 310, 439, 612
FspBI	CTAG	1 cut(s)	320
GluI	GCNGC	6 cut(s)	132, 263, 307, 310, 439, 612
HaeIII	GGCC	2 cut(s)	673, 714
HapII	CCGG	1 cut(s)	516
HgaI	GACGC	1 cut(s)	218
Hin1I	GRCGYC	1 cut(s)	210
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HindIII	AAGCTT	2 cut(s)	191, 329
HinfI	GANTC	4 cut(s)	111, 218, 619, 774
HpaII	CCGG	1 cut(s)	516
HphI	GGTGA	3 cut(s)	401, 505, 530
Hpy166II	GTNNAC	3 cut(s)	115, 325, 865
Hpy188I	TCNGA	1 cut(s)	295
Hpy8I	GTNNAC	3 cut(s)	115, 325, 865
Hpy99I	CGWCG	2 cut(s)	125, 212
HpyAV	CCTTC	2 cut(s)	790, 844
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4IV	ACGT	2 cut(s)	269, 367
HpyCH4V	TGCA	4 cut(s)	69, 386, 568, 851
HpyF3I	CTNAG	4 cut(s)	47, 294, 602, 720
HpySE526I	ACGT	2 cut(s)	269, 367
Hsp92I	GRCGYC	1 cut(s)	210
Kzo9I	GATC	5 cut(s)	57, 412, 520, 575, 746
LguI	GCTCTTC	1 cut(s)	28
LmnI	GCTCC	1 cut(s)	43
Lsp1109I	GCAGC	4 cut(s)	143, 274, 318, 623
LweI	GCATC	3 cut(s)	78, 306, 653
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	2 cut(s)	269, 367
MaeIII	GTNAC	3 cut(s)	62, 363, 694
MalI	GATC	5 cut(s)	59, 414, 522, 577, 748
MbiI	CCGCTC	1 cut(s)	441
MboI	GATC	5 cut(s)	57, 412, 520, 575, 746
MflI	RGATCY	1 cut(s)	575
MhlI	GDGCHC	1 cut(s)	764
MluCI	AATT	2 cut(s)	544, 677
MlyI	GAGTC	3 cut(s)	120, 613, 783
MmeI	TCCRAC	1 cut(s)	548
MnlI	CCTC	7 cut(s)	4, 157, 169, 175, 224, 343, 364
MseI	TTAA	2 cut(s)	333, 880
MslI	CAYNNNNRTG	1 cut(s)	408
MspI	CCGG	1 cut(s)	516
MspR9I	CCNGG	1 cut(s)	768
MvaI	CCWGG	1 cut(s)	768
NdeII	GATC	5 cut(s)	57, 412, 520, 575, 746
NlaIV	GGNNCC	1 cut(s)	577
NmuCI	GTSAC	1 cut(s)	694
PaqCI	CACCTGC	1 cut(s)	377
PasI	CCCWGGG	1 cut(s)	767
PceI	AGGCCT	1 cut(s)	714
PciSI	GCTCTTC	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	218
PinAI	ACCGGT	1 cut(s)	515
PkrI	GCNGC	6 cut(s)	133, 264, 308, 311, 440, 613
PleI	GAGTC	3 cut(s)	119, 613, 782
PpsI	GAGTC	3 cut(s)	119, 613, 782
Ppu21I	YACGTR	1 cut(s)	368
Psp6I	CCWGG	1 cut(s)	766
PspGI	CCWGG	1 cut(s)	766
PspN4I	GGNNCC	1 cut(s)	577
PspPI	GGNCC	1 cut(s)	671
PstNI	CAGNNNCTG	1 cut(s)	66
PsuI	RGATCY	1 cut(s)	575
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
RseI	CAYNNNNRTG	1 cut(s)	408
SalI	GTCGAC	1 cut(s)	323
SapI	GCTCTTC	1 cut(s)	28
SaqAI	TTAA	2 cut(s)	333, 880
SatI	GCNGC	6 cut(s)	132, 263, 307, 310, 439, 612
Sau3AI	GATC	5 cut(s)	57, 412, 520, 575, 746
Sau96I	GGNCC	1 cut(s)	671
SchI	GAGTC	3 cut(s)	120, 613, 783
ScrFI	CCNGG	1 cut(s)	768
SduI	GDGCHC	1 cut(s)	764
SetI	ASST	8 cut(s)	48, 195, 237, 272, 333, 370, 391, 590
SfaNI	GCATC	3 cut(s)	78, 306, 653
SgrAI	CRCCGGYG	1 cut(s)	515
SmiMI	CAYNNNNRTG	1 cut(s)	408
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
Sse9I	AATT	2 cut(s)	544, 677
SseBI	AGGCCT	1 cut(s)	714
SsiI	CCGC	5 cut(s)	310, 439, 446, 782, 876
SspMI	CTAG	1 cut(s)	320
StuI	AGGCCT	1 cut(s)	714
StyD4I	CCNGG	1 cut(s)	766
TaaI	ACNGT	1 cut(s)	397
TaiI	ACGT	2 cut(s)	272, 370
TaqI	TCGA	4 cut(s)	216, 324, 548, 802
TasI	AATT	2 cut(s)	544, 677
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	2 cut(s)	312, 441
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	2 cut(s)	333, 880
Tru9I	TTAA	2 cut(s)	333, 880
TseFI	GTSAC	1 cut(s)	694
TseI	GCWGC	4 cut(s)	131, 262, 306, 611
Tsp45I	GTSAC	1 cut(s)	694
TspDTI	ATGAA	2 cut(s)	288, 546
TspGWI	ACGGA	2 cut(s)	56, 588
XapI	RAATTY	2 cut(s)	544, 677
XcmI	CCANNNNNNNNNTGG	1 cut(s)	586
XmiI	GTMKAC	1 cut(s)	324
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.