Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0012119

Physical Location & Seq

Genomic Coordinates Forward (+)

13816614 .. 13819706

Gene Structure 3093 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G107000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGAAGAAGAAGGTATAGGGTTGGTTCTGGCAAGAGCTACAGAGCTGAGGTTGAAGATCAGCAACTGCATCCACAAAGCTAATGACCCACCACCCAAAAGGGAAAATGGAATCCAAGCTGATGGTGAAGCAGGAGATGAAGACCGAGAAGAAGAAGAAGAAGAAGAAGAAGATGATGATGATGAGGCGCATAAGCTTTTCAACATATGCGATGCCCTTGAATCCCTTGAGAACCAGCTCTCTTCCTTACAGGCTTTGCAACAGCAGCAAAGGTATGAAAGGGAAGTTGCCCTTTCTGAGATGGAAAGCAGTCGAAAGATGCTACTCAACAAGCTTAAGGAGTACAAAGGGAATGATTTGGAAGTGATACATGAAGCTTCTGCTTTTGCTGGTGAAACAGTAGAGCACAACAACGATCTCTTGCTTCCTCCATATCCAAGCCGGTCTCCACACACTTTTTGCCTAGAAAATGGCTATTTGCCACCTACACACAAGTCTCTACGAAATGGGATAATCAATAGTGATCCAACAAATGAAGAAAAGAAGAAATTGAGCGAGACAGACAGAGATGAGGTGAAAACTGGATCCAAAAACTCAAGAGGGTTGGGATTTGTCCTAAGCACAGCGGCCAAGACCGTGCTTACTATTGTTGGCGTGGCATCTGTGTTAAGCTTGTCTGGTTTTGGTCCTAGATTTGTGAGAAGTAATACCACTTTCAAAATATCAGGCCTTTCTCAGCAACCACTGAGTAAAGAAAAGAGATCGACAATTGAATGCCCCCCGGGGAGAGTCCTTGTTGTGGAAGACGGGAAAGCTCGATGCGTTGTGAAAGAGAGAGTTGAAGTTCCGTTCTCATCAGCTGTTGCAAGACCAGATGTAAACTATGGTTGCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0016020 GO:0016021 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

299

Amino Acids

32.99

Weight (kDa)

5.01

Isoelectric Point (pI)

54.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16070 AT2G16070 AT2G16070
fragaria_vesca	FvH4_2g07780
malus_domestica	MD05G1071000.v1.1
prunus_persica	Prupe.8G107000_v2.0.a1
pyrus_communis	pycom05g06140 pycom10g06590
rosa_chinensis	RchiOBHm_Chr6g0262181
rosa_laevigata	RLG00000014450
rosa_multiflora	Rmu_co8439443.1_g000001 Rmu_sc0002510.1_g000018
rosa_roxburghii	Rroxscaffold_7G00207880
rosa_rugosa	Rorug05G0595400
rosa_samantha	Rh6AG115300 Rh6BG109400 Rh6CG106900 Rh6DG097400
rosa_wichuraiana	Rw6G010040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	626, 891
AclWI	GGATC	3 cut(s)	518, 579, 592
AcoI	YGGCCR	1 cut(s)	627
AfaI	GTAC	1 cut(s)	344
AfiI	CCNNNNNNNGG	1 cut(s)	799
AflII	CTTAAG	1 cut(s)	335
AgsI	TTSAA	6 cut(s)	55, 202, 221, 718, 773, 842
Alw21I	GWGCWC	1 cut(s)	408
Alw26I	GTCTC	3 cut(s)	450, 501, 551
AlwI	GGATC	3 cut(s)	518, 579, 592
AlwNI	CAGNNNCTG	1 cut(s)	66
Ama87I	CYCGRG	1 cut(s)	781
AoxI	GGCC	2 cut(s)	627, 727
ApeKI	GCWGC	1 cut(s)	265
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	1 cut(s)	686
AsuC2I	CCSGG	2 cut(s)	782, 783
AsuHPI	GGTGA	3 cut(s)	137, 404, 586
AvaI	CYCGRG	1 cut(s)	781
AvaII	GGWCC	1 cut(s)	686
BamHI	GGATCC	1 cut(s)	584
BbsI	GAAGAC	2 cut(s)	147, 810
Bbv12I	GWGCWC	1 cut(s)	408
BbvCI	CCTCAGC	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	2 cut(s)	116, 295
BcnI	CCSGG	2 cut(s)	782, 783
BcoDI	GTCTC	3 cut(s)	450, 501, 551
BfaI	CTAG	2 cut(s)	464, 690
BfmI	CTRYAG	1 cut(s)	39
BfrI	CTTAAG	1 cut(s)	335
BisI	GCNGC	2 cut(s)	266, 627
BlsI	GCNGC	2 cut(s)	267, 628
Bme1390I	CCNGG	2 cut(s)	782, 783
Bme18I	GGWCC	1 cut(s)	686
BmeT110I	CYCGRG	1 cut(s)	781
BmgT120I	GGNCC	1 cut(s)	686
BmiI	GGNNCC	1 cut(s)	586
BmrFI	CCNGG	2 cut(s)	782, 783
BmsI	GCATC	5 cut(s)	78, 202, 309, 668, 809
BpiI	GAAGAC	2 cut(s)	147, 810
Bpu10I	CCTNAGC	2 cut(s)	47, 617
BpuEI	CTTGAG	2 cut(s)	248, 580
BpuMI	CCSGG	2 cut(s)	782, 783
BsaI	GGTCTC	1 cut(s)	450
BsaJI	CCNNGG	3 cut(s)	780, 781, 782
Bsc4I	CCNNNNNNNGG	1 cut(s)	799
Bse118I	RCCGGY	1 cut(s)	441
Bse1I	ACTGG	1 cut(s)	586
BseDI	CCNNGG	3 cut(s)	780, 781, 782
BseGI	GGATG	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	799
BseMII	CTCAG	4 cut(s)	38, 288, 737, 749
BseNI	ACTGG	1 cut(s)	586
BseXI	GCAGC	1 cut(s)	277
BshFI	GGCC	2 cut(s)	629, 729
BsiHKAI	GWGCWC	1 cut(s)	408
BsiHKCI	CYCGRG	1 cut(s)	781
BsiSI	CCGG	2 cut(s)	442, 782
BslI	CCNNNNNNNGG	1 cut(s)	799
BsmAI	GTCTC	3 cut(s)	450, 501, 551
BsmI	GAATGC	1 cut(s)	779
BsnI	GGCC	2 cut(s)	629, 729
Bso31I	GGTCTC	1 cut(s)	450
BsoBI	CYCGRG	1 cut(s)	781
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp143I	GATC	5 cut(s)	57, 415, 523, 584, 761
BspACI	CCGC	2 cut(s)	626, 891
BspANI	GGCC	2 cut(s)	629, 729
BspCNI	CTCAG	4 cut(s)	39, 289, 738, 748
BspLI	GGNNCC	1 cut(s)	586
BspPI	GGATC	3 cut(s)	518, 579, 592
BspTI	CTTAAG	1 cut(s)	335
BspTNI	GGTCTC	1 cut(s)	450
BsrFI	RCCGGY	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	586
BssAI	RCCGGY	1 cut(s)	441
BssECI	CCNNGG	3 cut(s)	780, 781, 782
BssMI	GATC	5 cut(s)	57, 415, 523, 584, 761
Bst4CI	ACNGT	2 cut(s)	400, 637
Bst6I	CTCTTC	1 cut(s)	247
BstAFI	CTTAAG	1 cut(s)	335
BstDEI	CTNAG	5 cut(s)	47, 297, 617, 735, 746
BstF5I	GGATG	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	5 cut(s)	60, 418, 526, 587, 764
BstMAI	GTCTC	3 cut(s)	450, 501, 551
BstMBI	GATC	5 cut(s)	57, 415, 523, 584, 761
BstMWI	GCNNNNNNNGC	1 cut(s)	265
BstSCI	CCNGG	2 cut(s)	780, 781
BstSFI	CTRYAG	1 cut(s)	39
BstV1I	GCAGC	1 cut(s)	277
BstV2I	GAAGAC	2 cut(s)	147, 810
BstX2I	RGATCY	1 cut(s)	584
BstXI	CCANNNNNNTGG	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	584
BsuRI	GGCC	2 cut(s)	629, 729
BtgZI	GCGATG	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	743
CaiI	CAGNNNCTG	1 cut(s)	66
CfoI	GCGC	1 cut(s)	190
Cfr10I	RCCGGY	1 cut(s)	441
Cfr13I	GGNCC	1 cut(s)	686
Cfr9I	CCCGGG	1 cut(s)	781
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	1 cut(s)	371
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	5 cut(s)	47, 297, 617, 735, 746
DpnI	GATC	5 cut(s)	59, 417, 525, 586, 763
DpnII	GATC	5 cut(s)	57, 415, 523, 584, 761
EaeI	YGGCCR	1 cut(s)	627
Eam1104I	CTCTTC	1 cut(s)	247
EarI	CTCTTC	1 cut(s)	247
Eco147I	AGGCCT	1 cut(s)	729
Eco31I	GGTCTC	1 cut(s)	450
Eco47I	GGWCC	1 cut(s)	686
Eco88I	CYCGRG	1 cut(s)	781
FaeI	CATG	1 cut(s)	374
FaiI	YATR	8 cut(s)	17, 192, 206, 208, 276, 372, 433, 885
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FatI	CATG	1 cut(s)	370
FauNDI	CATATG	1 cut(s)	206
Fnu4HI	GCNGC	2 cut(s)	266, 627
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	2 cut(s)	266, 627
FspBI	CTAG	2 cut(s)	464, 690
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	2 cut(s)	266, 627
HaeIII	GGCC	2 cut(s)	629, 729
HapII	CCGG	2 cut(s)	442, 782
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	1 cut(s)	374
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HindIII	AAGCTT	4 cut(s)	194, 332, 375, 670
HinfI	GANTC	3 cut(s)	111, 221, 789
HpaII	CCGG	2 cut(s)	442, 782
HphI	GGTGA	3 cut(s)	137, 404, 586
Hpy166II	GTNNAC	1 cut(s)	880
Hpy188I	TCNGA	1 cut(s)	298
Hpy188III	TCNNGA	1 cut(s)	597
Hpy8I	GTNNAC	1 cut(s)	880
HpyAV	CCTTC	1 cut(s)	5
HpyCH4III	ACNGT	2 cut(s)	400, 637
HpyCH4V	TGCA	3 cut(s)	69, 259, 866
HpyF10VI	GCNNNNNNNGC	1 cut(s)	265
HpyF3I	CTNAG	5 cut(s)	47, 297, 617, 735, 746
Hsp92II	CATG	1 cut(s)	374
HspAI	GCGC	1 cut(s)	188
Kzo9I	GATC	5 cut(s)	57, 415, 523, 584, 761
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	5 cut(s)	78, 202, 309, 668, 809
MaeI	CTAG	2 cut(s)	464, 690
MalI	GATC	5 cut(s)	59, 417, 525, 586, 763
MboI	GATC	5 cut(s)	57, 415, 523, 584, 761
MfeI	CAATTG	1 cut(s)	768
MflI	RGATCY	1 cut(s)	584
MhlI	GDGCHC	1 cut(s)	408
MluCI	AATT	2 cut(s)	548, 768
MlyI	GAGTC	1 cut(s)	798
MmeI	TCCRAC	1 cut(s)	551
MnlI	CCTC	5 cut(s)	42, 178, 438, 565, 593
MseI	TTAA	3 cut(s)	336, 668, 895
MspA1I	CMGCKG	2 cut(s)	626, 860
MspCI	CTTAAG	1 cut(s)	335
MspI	CCGG	2 cut(s)	442, 782
MspR9I	CCNGG	2 cut(s)	782, 783
MunI	CAATTG	1 cut(s)	768
Mva1269I	GAATGC	1 cut(s)	779
MwoI	GCNNNNNNNGC	1 cut(s)	265
NciI	CCSGG	2 cut(s)	782, 783
NdeI	CATATG	1 cut(s)	206
NdeII	GATC	5 cut(s)	57, 415, 523, 584, 761
NlaIII	CATG	1 cut(s)	374
NlaIV	GGNNCC	1 cut(s)	586
PceI	AGGCCT	1 cut(s)	729
PctI	GAATGC	1 cut(s)	779
PfeI	GAWTC	2 cut(s)	111, 221
PkrI	GCNGC	2 cut(s)	267, 628
PleI	GAGTC	1 cut(s)	797
PpsI	GAGTC	1 cut(s)	797
PspN4I	GGNNCC	1 cut(s)	586
PspPI	GGNCC	1 cut(s)	686
PstNI	CAGNNNCTG	1 cut(s)	66
PsuI	RGATCY	1 cut(s)	584
PvuII	CAGCTG	1 cut(s)	860
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
SaqAI	TTAA	3 cut(s)	336, 668, 895
SatI	GCNGC	2 cut(s)	266, 627
Sau3AI	GATC	5 cut(s)	57, 415, 523, 584, 761
Sau96I	GGNCC	1 cut(s)	686
SchI	GAGTC	1 cut(s)	798
ScrFI	CCNGG	2 cut(s)	782, 783
SduI	GDGCHC	1 cut(s)	408
SfaNI	GCATC	5 cut(s)	78, 202, 309, 668, 809
SfcI	CTRYAG	1 cut(s)	39
SinI	GGWCC	1 cut(s)	686
SmaI	CCCGGG	1 cut(s)	783
SmlI	CTYRAG	3 cut(s)	227, 335, 595
SmoI	CTYRAG	3 cut(s)	227, 335, 595
Sse9I	AATT	2 cut(s)	548, 768
SseBI	AGGCCT	1 cut(s)	729
SsiI	CCGC	2 cut(s)	626, 891
SspMI	CTAG	2 cut(s)	464, 690
StuI	AGGCCT	1 cut(s)	729
StyD4I	CCNGG	2 cut(s)	780, 781
TaaI	ACNGT	2 cut(s)	400, 637
TaqI	TCGA	3 cut(s)	313, 764, 817
TaqII	GACCGA	1 cut(s)	159
TasI	AATT	2 cut(s)	548, 768
TatI	WGTACW	1 cut(s)	342
TauI	GCSGC	1 cut(s)	629
TfiI	GAWTC	2 cut(s)	111, 221
Tru1I	TTAA	3 cut(s)	336, 668, 895
Tru9I	TTAA	3 cut(s)	336, 668, 895
TscAI	CASTG	1 cut(s)	750
TseI	GCWGC	1 cut(s)	265
TspDTI	ATGAA	4 cut(s)	153, 291, 387, 549
TspGWI	ACGGA	1 cut(s)	837
TspMI	CCCGGG	1 cut(s)	781
TspRI	CASTG	1 cut(s)	750
Vha464I	CTTAAG	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	686
XmaI	CCCGGG	1 cut(s)	781
XspI	CTAG	2 cut(s)	464, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.