Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012119

Physical Location & Seq

Genomic Coordinates Forward (+)

7692524 .. 7695794

Gene Structure 3271 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g06590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGAAGAAGAGGGCATTGGGTTGGTTCTGGGAAGAGCCACAGAGCTGAGATTGAAGATCAGCAACTGCATCCACAAAGCAAATCACCCACCACCCAATAGAGAAAATGGAGTCTACGCCGACGGCGAAGCAACAGACAAAGTAGCAGAAGAAAACGAAGAAGAGGAAGTGGAAGAGGAAGAGGCACATAAGCTTTTCAACATCTGCGACGCCCTTGAATCCCTTGAGAACCAGCTCTCTTCCTTACAGGCTTTGCAACAGCAGCAAACGTATGAAAGGGAAGTTGCCCTTTCTGAGATTGAAAGCAGCCGCAAGATGCTACTCGACAAACTTAAAGAGTACAAAGGGGAGGAATTAGAAGTGTTACGTGAGGCTTCTGCTTTTGCGGGTGAAACAGTAGAGCACAACAATGATCTTTTGCTTCCTCCATATCCAAGCCGCTCTCCACACATTCTTTCTGTAGAAAATGGCTATTTACCACCTGCACACAAGTCTCCACGAAATGGGATAATCTCTGGTGATCCGACAAATGAAGCGAAGAAGAATTTGAGTGAGACAGATAAGATGCAAAGTGGATCCAAAAACTCAAAAGGGTTGGGATTTTTCTTAAGCACTGCAGCCAAGACATTGCTTACTATTGTTGGTGTGGCATCTGTATTAAGCCTGTCTGGTTTTGGGCCTAAACTTGTGAGAAGTAATGCCATTTTCAAAATATCCGGTCTTTCTCAGCAACCACAAACTAAAGAACAGATATCAACCATTGAATGCCCCCCCGGGAGAGTCCTTGTGGTGGAAGATGGGAAGGGGCGATGCGTTGTGAAAGAGAGAGTTGAAGTTCCCTTCTCTTCAGTTGTTGCAAGACCAGATGTAAACTATGGGTGCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009707 GO:0009941 GO:0016020 GO:0016021 GO:0019867 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031350 GO:0031351 GO:0031354 GO:0031355 GO:0031358 GO:0031359 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

296

Amino Acids

32.28

Weight (kDa)

5.09

Isoelectric Point (pI)

57.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16070 AT2G16070 AT2G16070
fragaria_vesca	FvH4_2g07780
malus_domestica	MD05G1071000.v1.1
prunus_persica	Prupe.8G107000_v2.0.a1
pyrus_communis	pycom05g06140 pycom10g06590
rosa_chinensis	RchiOBHm_Chr6g0262181
rosa_laevigata	RLG00000014450
rosa_multiflora	Rmu_co8439443.1_g000001 Rmu_sc0002510.1_g000018
rosa_roxburghii	Rroxscaffold_7G00207880
rosa_rugosa	Rorug05G0595400
rosa_samantha	Rh6AG115300 Rh6BG109400 Rh6CG106900 Rh6DG097400
rosa_wichuraiana	Rw6G010040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	490
Acc36I	ACCTGC	1 cut(s)	490
AccB7I	CCANNNNNTGG	1 cut(s)	503
AccBSI	CCGCTC	1 cut(s)	441
AccI	GTMKAC	1 cut(s)	114
AciI	CCGC	4 cut(s)	310, 386, 439, 882
AclWI	GGATC	3 cut(s)	515, 570, 583
AcsI	RAATTY	1 cut(s)	544
AcuI	CTGAAG	1 cut(s)	831
AcyI	GRCGYC	1 cut(s)	210
AfaI	GTAC	1 cut(s)	341
AfiI	CCNNNNNNNGG	2 cut(s)	503, 790
AflII	CTTAAG	1 cut(s)	607
AgsI	TTSAA	7 cut(s)	55, 199, 218, 302, 709, 764, 833
AjuI	GAANNNNNNNTTGG	1 cut(s)	32
AluBI	AGCT	3 cut(s)	46, 193, 235
AluI	AGCT	3 cut(s)	46, 193, 235
Alw21I	GWGCWC	1 cut(s)	405
Alw26I	GTCTC	2 cut(s)	498, 548
AlwI	GGATC	3 cut(s)	515, 570, 583
AlwNI	CAGNNNCTG	1 cut(s)	66
Ama87I	CYCGRG	1 cut(s)	773
AoxI	GGCC	1 cut(s)	677
ApeKI	GCWGC	3 cut(s)	262, 306, 617
ApoI	RAATTY	1 cut(s)	544
AspS9I	GGNCC	1 cut(s)	677
AsuC2I	CCSGG	2 cut(s)	774, 775
AsuHPI	GGTGA	3 cut(s)	77, 401, 530
AvaI	CYCGRG	1 cut(s)	773
BamHI	GGATCC	1 cut(s)	575
Bbv12I	GWGCWC	1 cut(s)	405
BbvI	GCAGC	3 cut(s)	274, 318, 629
BccI	CCATC	1 cut(s)	791
BceAI	ACGGC	1 cut(s)	139
BcnI	CCSGG	2 cut(s)	774, 775
BcoDI	GTCTC	2 cut(s)	498, 548
BfmI	CTRYAG	2 cut(s)	459, 615
BfrI	CTTAAG	1 cut(s)	607
BfuAI	ACCTGC	1 cut(s)	490
BisI	GCNGC	5 cut(s)	263, 307, 310, 439, 618
BlsI	GCNGC	5 cut(s)	264, 308, 311, 440, 619
Bme1390I	CCNGG	2 cut(s)	774, 775
BmeT110I	CYCGRG	1 cut(s)	773
BmgT120I	GGNCC	1 cut(s)	677
BmiI	GGNNCC	1 cut(s)	577
BmrFI	CCNGG	2 cut(s)	774, 775
BmsI	GCATC	5 cut(s)	78, 306, 555, 659, 800
BpuEI	CTTGAG	1 cut(s)	245
BpuMI	CCSGG	2 cut(s)	774, 775
BsaAI	YACGTR	1 cut(s)	368
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	772, 773
BsaWI	WCCGGW	1 cut(s)	716
Bsc4I	CCNNNNNNNGG	2 cut(s)	503, 790
Bse3DI	GCAATG	1 cut(s)	626
BseDI	CCNNGG	2 cut(s)	772, 773
BseGI	GGATG	1 cut(s)	69
BseLI	CCNNNNNNNGG	2 cut(s)	503, 790
BseMI	GCAATG	1 cut(s)	626
BseMII	CTCAG	3 cut(s)	38, 285, 740
BseXI	GCAGC	3 cut(s)	274, 318, 629
BsgI	GTGCAG	1 cut(s)	468
BshFI	GGCC	1 cut(s)	679
BsiHKAI	GWGCWC	1 cut(s)	405
BsiHKCI	CYCGRG	1 cut(s)	773
BsiSI	CCGG	2 cut(s)	717, 774
BslI	CCNNNNNNNGG	2 cut(s)	503, 790
BsmAI	GTCTC	2 cut(s)	498, 548
BsmI	GAATGC	1 cut(s)	770
BsnI	GGCC	1 cut(s)	679
BsoBI	CYCGRG	1 cut(s)	773
Bsp1286I	GDGCHC	1 cut(s)	405
Bsp143I	GATC	4 cut(s)	57, 412, 520, 575
BspACI	CCGC	4 cut(s)	310, 386, 439, 882
BspANI	GGCC	1 cut(s)	679
BspCNI	CTCAG	3 cut(s)	39, 286, 739
BspLI	GGNNCC	1 cut(s)	577
BspMAI	CTGCAG	1 cut(s)	619
BspMI	ACCTGC	1 cut(s)	490
BspPI	GGATC	3 cut(s)	515, 570, 583
BspQI	GCTCTTC	1 cut(s)	28
BspTI	CTTAAG	1 cut(s)	607
BsrBI	CCGCTC	1 cut(s)	441
BsrDI	GCAATG	1 cut(s)	626
BssECI	CCNNGG	2 cut(s)	772, 773
BssMI	GATC	4 cut(s)	57, 412, 520, 575
BssNI	GRCGYC	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	397
Bst6I	CTCTTC	7 cut(s)	3, 28, 156, 168, 174, 244, 850
BstACI	GRCGYC	1 cut(s)	210
BstAFI	CTTAAG	1 cut(s)	607
BstBAI	YACGTR	1 cut(s)	368
BstDEI	CTNAG	3 cut(s)	47, 294, 726
BstF5I	GGATG	1 cut(s)	69
BstKTI	GATC	4 cut(s)	60, 415, 523, 578
BstMAI	GTCTC	2 cut(s)	498, 548
BstMBI	GATC	4 cut(s)	57, 412, 520, 575
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstSCI	CCNGG	2 cut(s)	772, 773
BstSFI	CTRYAG	2 cut(s)	459, 615
BstV1I	GCAGC	3 cut(s)	274, 318, 629
BstX2I	RGATCY	1 cut(s)	575
BstYI	RGATCY	1 cut(s)	575
BsuRI	GGCC	1 cut(s)	679
BtgZI	GCGATG	1 cut(s)	823
BtsCI	GGATG	1 cut(s)	69
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	1 cut(s)	612
BveI	ACCTGC	1 cut(s)	490
CaiI	CAGNNNCTG	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	677
Cfr9I	CCCGGG	1 cut(s)	773
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	340
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	3 cut(s)	47, 294, 726
DpnI	GATC	4 cut(s)	59, 414, 522, 577
DpnII	GATC	4 cut(s)	57, 412, 520, 575
Eam1104I	CTCTTC	7 cut(s)	3, 28, 156, 168, 174, 244, 850
EarI	CTCTTC	7 cut(s)	3, 28, 156, 168, 174, 244, 850
Eco32I	GATATC	1 cut(s)	753
Eco57I	CTGAAG	1 cut(s)	831
Eco88I	CYCGRG	1 cut(s)	773
EcoRV	GATATC	1 cut(s)	753
FaiI	YATR	4 cut(s)	189, 273, 430, 876
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FauI	CCCGC	1 cut(s)	379
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	5 cut(s)	263, 307, 310, 439, 618
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	5 cut(s)	263, 307, 310, 439, 618
GluI	GCNGC	5 cut(s)	263, 307, 310, 439, 618
HaeIII	GGCC	1 cut(s)	679
HapII	CCGG	2 cut(s)	717, 774
HgaI	GACGC	1 cut(s)	218
Hin1I	GRCGYC	1 cut(s)	210
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	3 cut(s)	111, 218, 780
HpaII	CCGG	2 cut(s)	717, 774
HphI	GGTGA	3 cut(s)	77, 401, 530
Hpy166II	GTNNAC	2 cut(s)	115, 871
Hpy188I	TCNGA	2 cut(s)	295, 525
Hpy8I	GTNNAC	2 cut(s)	115, 871
Hpy99I	CGWCG	2 cut(s)	125, 212
HpyAV	CCTTC	2 cut(s)	796, 850
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4IV	ACGT	2 cut(s)	269, 367
HpyCH4V	TGCA	6 cut(s)	69, 256, 485, 568, 617, 857
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	3 cut(s)	47, 294, 726
HpySE526I	ACGT	2 cut(s)	269, 367
Hsp92I	GRCGYC	1 cut(s)	210
Kzo9I	GATC	4 cut(s)	57, 412, 520, 575
LguI	GCTCTTC	1 cut(s)	28
Lsp1109I	GCAGC	3 cut(s)	274, 318, 629
LweI	GCATC	5 cut(s)	78, 306, 555, 659, 800
MaeII	ACGT	2 cut(s)	269, 367
MaeIII	GTNAC	1 cut(s)	363
MalI	GATC	4 cut(s)	59, 414, 522, 577
MbiI	CCGCTC	1 cut(s)	441
MboI	GATC	4 cut(s)	57, 412, 520, 575
MflI	RGATCY	1 cut(s)	575
MhlI	GDGCHC	1 cut(s)	405
MluCI	AATT	2 cut(s)	353, 544
MlyI	GAGTC	2 cut(s)	120, 789
MmeI	TCCRAC	1 cut(s)	548
MnlI	CCTC	7 cut(s)	4, 157, 169, 175, 343, 364, 435
MseI	TTAA	4 cut(s)	333, 608, 659, 886
MslI	CAYNNNNRTG	1 cut(s)	408
MspCI	CTTAAG	1 cut(s)	607
MspI	CCGG	2 cut(s)	717, 774
MspR9I	CCNGG	2 cut(s)	774, 775
Mva1269I	GAATGC	1 cut(s)	770
MwoI	GCNNNNNNNGC	1 cut(s)	262
NciI	CCSGG	2 cut(s)	774, 775
NdeII	GATC	4 cut(s)	57, 412, 520, 575
NlaIV	GGNNCC	1 cut(s)	577
PaqCI	CACCTGC	1 cut(s)	490
PciSI	GCTCTTC	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PctI	GAATGC	1 cut(s)	770
PfeI	GAWTC	1 cut(s)	218
PflMI	CCANNNNNTGG	1 cut(s)	503
PkrI	GCNGC	5 cut(s)	264, 308, 311, 440, 619
PleI	GAGTC	2 cut(s)	119, 788
PpsI	GAGTC	2 cut(s)	119, 788
Ppu21I	YACGTR	1 cut(s)	368
PspN4I	GGNNCC	1 cut(s)	577
PspPI	GGNCC	1 cut(s)	677
PstI	CTGCAG	1 cut(s)	619
PstNI	CAGNNNCTG	1 cut(s)	66
PsuI	RGATCY	1 cut(s)	575
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
RseI	CAYNNNNRTG	1 cut(s)	408
SapI	GCTCTTC	1 cut(s)	28
SaqAI	TTAA	4 cut(s)	333, 608, 659, 886
SatI	GCNGC	5 cut(s)	263, 307, 310, 439, 618
Sau3AI	GATC	4 cut(s)	57, 412, 520, 575
Sau96I	GGNCC	1 cut(s)	677
SchI	GAGTC	2 cut(s)	120, 789
ScrFI	CCNGG	2 cut(s)	774, 775
SduI	GDGCHC	1 cut(s)	405
SetI	ASST	6 cut(s)	48, 195, 237, 272, 370, 484
SfaNI	GCATC	5 cut(s)	78, 306, 555, 659, 800
SfcI	CTRYAG	2 cut(s)	459, 615
SmaI	CCCGGG	1 cut(s)	775
SmiMI	CAYNNNNRTG	1 cut(s)	408
SmlI	CTYRAG	2 cut(s)	224, 607
SmoI	CTYRAG	2 cut(s)	224, 607
Sse9I	AATT	2 cut(s)	353, 544
SsiI	CCGC	4 cut(s)	310, 386, 439, 882
StyD4I	CCNGG	2 cut(s)	772, 773
TaaI	ACNGT	1 cut(s)	397
TaiI	ACGT	2 cut(s)	272, 370
TaqI	TCGA	1 cut(s)	324
TasI	AATT	2 cut(s)	353, 544
TatI	WGTACW	1 cut(s)	339
TauI	GCSGC	2 cut(s)	312, 441
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	4 cut(s)	333, 608, 659, 886
Tru9I	TTAA	4 cut(s)	333, 608, 659, 886
TscAI	CASTG	1 cut(s)	619
TseI	GCWGC	3 cut(s)	262, 306, 617
TspDTI	ATGAA	2 cut(s)	288, 546
TspMI	CCCGGG	1 cut(s)	773
TspRI	CASTG	1 cut(s)	619
Van91I	CCANNNNNTGG	1 cut(s)	503
Vha464I	CTTAAG	1 cut(s)	607
XapI	RAATTY	1 cut(s)	544
XmaI	CCCGGG	1 cut(s)	773
XmiI	GTMKAC	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.