Rh6CG106900

Plastid division protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0012119
Physical Location & Seq
Reverse (-)
12292016 .. 12294752
2737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG106900.1

Sequence Viewer

Length: 861 bp
ATGGAGGAAGAGGGTATAGGGCTAGTTCTGGCGAAAGCCACAGAGCTCAGAATGAAGATCAGCAGCTGCTTCCACAAAGACAATGACCCATTACCCAAAAAGGAAAATGGAGTCCATGTTGATGGTGGGTCGGGAGATGAAGAAGGTGATGGTGAAGAAGATGAAGAGTCACAGAGACTTTTCAACATTTGCGATGCCCTTGAAGCCCTTGAGAATCAACTCTCTAACTTACAGACCATGCAACAGCAGCAAAGGTACGAAAGAGAAGTTTCCCTTGCCGAGATTGAAAGCAGCCGCAAGATGTTACTGAACAAGATTAAAGAGTACAAAGGGAAGGATTTGGAAGTGATACATGAGGCCTCTGCTTTTGCTGGTGAAACAGTGGATCACAGTAATGATCTCTTGCTTCCTCCATATCCAAGCCGCTCTCCACACACTTTTGTTCTTGAAAATGGCTATTTGCCACCTACACATAAGCCTCTACGAAATGGGGTCATCAACAATGATGCAACAAATGGAGCAAAGAAAAATTTGAGTGATACAGAGAGATCCAAAAACTCAATGGGATTGCGATCTGTTCTTAGCACAGCAGCCAAGACAGTGCTTACTCTTGTTGGTGTGGTATCTGTACTTAGCCTGTCTGGTTTTGGGCCTAAAGTAGTAAGAAGTAATACTGCTTTCAATATATTAGGCCGTTTTAAGCAACCGCCAACTGAAGAAAAGAGATCAACTGTTGAATGCCCCCCTGGGAGAGTCCTTGTTCTGGAAGATGGGAAGGCTCGATGTGTTGTGAAAGAAAGAGTTGAAGTTCCTTTCTCTTCAGTTGTTGCAAGACCTGATGTAAACTATGGCTGCGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Globin

Protein Analysis

286

Amino Acids

31.43

Weight (kDa)

5.54

Isoelectric Point (pI)

54.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012119)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16070 AT2G16070 AT2G16070
fragaria_vesca FvH4_2g07780
malus_domestica MD05G1071000.v1.1
prunus_persica Prupe.8G107000_v2.0.a1
pyrus_communis pycom05g06140 pycom10g06590
rosa_chinensis RchiOBHm_Chr6g0262181
rosa_laevigata RLG00000014450
rosa_multiflora Rmu_co8439443.1_g000001 Rmu_sc0002510.1_g000018
rosa_roxburghii Rroxscaffold_7G00207880
rosa_rugosa Rorug05G0595400
rosa_samantha Rh6AG115300 Rh6BG109400 Rh6CG106900 Rh6DG097400
rosa_wichuraiana Rw6G010040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 426
AciI CCGC 4 cut(s) 295, 424, 707, 855
AclWI GGATC 2 cut(s) 393, 543
AcsI RAATTY 1 cut(s) 529
AcuI CTGAAG 2 cut(s) 735, 804
AfaI GTAC 3 cut(s) 257, 326, 630
AfiI CCNNNNNNNGG 1 cut(s) 763
AgsI TTSAA 7 cut(s) 184, 203, 287, 449, 682, 737, 806
AjnI CCWGG 1 cut(s) 745
AluBI AGCT 2 cut(s) 46, 66
AluI AGCT 2 cut(s) 46, 66
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 2 cut(s) 393, 543
AlwNI CAGNNNCTG 1 cut(s) 66
AoxI GGCC 3 cut(s) 357, 650, 691
ApeKI GCWGC 6 cut(s) 63, 66, 247, 291, 590, 852
ApoI RAATTY 1 cut(s) 529
AspS9I GGNCC 1 cut(s) 650
AsuHPI GGTGA 3 cut(s) 158, 164, 386
BanII GRGCYC 1 cut(s) 48
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 6 cut(s) 53, 75, 259, 303, 602, 839
BccI CCATC 3 cut(s) 116, 143, 764
BceAI ACGGC 1 cut(s) 678
BciT130I CCWGG 1 cut(s) 747
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 1 cut(s) 23
BisI GCNGC 8 cut(s) 64, 67, 248, 292, 295, 424, 591, 853
BlsI GCNGC 8 cut(s) 65, 68, 249, 293, 296, 425, 592, 854
Bme1390I CCNGG 1 cut(s) 747
BmgT120I GGNCC 1 cut(s) 650
BmrFI CCNGG 1 cut(s) 747
BmsI GCATC 2 cut(s) 184, 496
BpuEI CTTGAG 1 cut(s) 230
BsaBI GATNNNNATC 1 cut(s) 571
BsaJI CCNNGG 2 cut(s) 745, 746
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bsc4I CCNNNNNNNGG 1 cut(s) 763
Bse8I GATNNNNATC 1 cut(s) 571
BseBI CCWGG 1 cut(s) 747
BseDI CCNNGG 2 cut(s) 745, 746
BseJI GATNNNNATC 1 cut(s) 571
BseLI CCNNNNNNNGG 1 cut(s) 763
BseMII CTCAG 1 cut(s) 61
BseXI GCAGC 6 cut(s) 53, 75, 259, 303, 602, 839
BshFI GGCC 3 cut(s) 359, 652, 693
BsiHKAI GWGCWC 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 763
BsmAI GTCTC 1 cut(s) 169
BsmI GAATGC 1 cut(s) 743
BsnI GGCC 3 cut(s) 359, 652, 693
Bsp1286I GDGCHC 1 cut(s) 48
Bsp143I GATC 6 cut(s) 57, 385, 397, 548, 572, 725
BspACI CCGC 4 cut(s) 295, 424, 707, 855
BspANI GGCC 3 cut(s) 359, 652, 693
BspCNI CTCAG 1 cut(s) 60
BspPI GGATC 2 cut(s) 393, 543
BsrBI CCGCTC 1 cut(s) 426
BssECI CCNNGG 2 cut(s) 745, 746
BssMI GATC 6 cut(s) 57, 385, 397, 548, 572, 725
Bst2UI CCWGG 1 cut(s) 747
Bst4CI ACNGT 4 cut(s) 382, 392, 601, 733
Bst6I CTCTTC 3 cut(s) 3, 159, 823
BstDEI CTNAG 3 cut(s) 47, 581, 632
BstKTI GATC 6 cut(s) 60, 388, 400, 551, 575, 728
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 6 cut(s) 57, 385, 397, 548, 572, 725
BstMWI GCNNNNNNNGC 2 cut(s) 203, 247
BstNI CCWGG 1 cut(s) 747
BstSCI CCNGG 1 cut(s) 745
BstV1I GCAGC 6 cut(s) 53, 75, 259, 303, 602, 839
BstX2I RGATCY 1 cut(s) 548
BstXI CCANNNNNNTGG 1 cut(s) 122
BstYI RGATCY 1 cut(s) 548
BsuRI GGCC 3 cut(s) 359, 652, 693
BtgZI GCGATG 1 cut(s) 207
BtsIMutI CAGTG 2 cut(s) 387, 606
CaiI CAGNNNCTG 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 650
Csp6I GTAC 3 cut(s) 256, 325, 629
CviAII CATG 3 cut(s) 116, 238, 353
CviQI GTAC 3 cut(s) 256, 325, 629
DdeI CTNAG 3 cut(s) 47, 581, 632
DpnI GATC 6 cut(s) 59, 387, 399, 550, 574, 727
DpnII GATC 6 cut(s) 57, 385, 397, 548, 572, 725
Eam1104I CTCTTC 3 cut(s) 3, 159, 823
EarI CTCTTC 3 cut(s) 3, 159, 823
Ecl136II GAGCTC 1 cut(s) 46
Eco147I AGGCCT 1 cut(s) 359
Eco24I GRGCYC 1 cut(s) 48
Eco53kI GAGCTC 1 cut(s) 46
Eco57I CTGAAG 2 cut(s) 735, 804
EcoICRI GAGCTC 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 745
EcoT38I GRGCYC 1 cut(s) 48
FaeI CATG 3 cut(s) 119, 241, 356
FaiI YATR 8 cut(s) 17, 117, 239, 354, 415, 474, 686, 849
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FatI CATG 3 cut(s) 115, 237, 352
Fnu4HI GCNGC 8 cut(s) 64, 67, 248, 292, 295, 424, 591, 853
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 8 cut(s) 64, 67, 248, 292, 295, 424, 591, 853
FspBI CTAG 1 cut(s) 23
GluI GCNGC 8 cut(s) 64, 67, 248, 292, 295, 424, 591, 853
HaeIII GGCC 3 cut(s) 359, 652, 693
Hin1II CATG 3 cut(s) 119, 241, 356
HinfI GANTC 4 cut(s) 111, 167, 214, 753
HphI GGTGA 3 cut(s) 158, 164, 386
Hpy166II GTNNAC 1 cut(s) 844
Hpy188I TCNGA 1 cut(s) 50
Hpy188III TCNNGA 3 cut(s) 132, 446, 764
Hpy8I GTNNAC 1 cut(s) 844
HpyAV CCTTC 3 cut(s) 137, 328, 769
HpyCH4III ACNGT 4 cut(s) 382, 392, 601, 733
HpyCH4V TGCA 3 cut(s) 241, 509, 830
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 247
HpyF3I CTNAG 3 cut(s) 47, 581, 632
Hsp92II CATG 3 cut(s) 119, 241, 356
Kzo9I GATC 6 cut(s) 57, 385, 397, 548, 572, 725
LmnI GCTCC 1 cut(s) 518
LpnPI CCDG 8 cut(s) 14, 357, 627, 650, 732, 749, 759, 849
Lsp1109I GCAGC 6 cut(s) 53, 75, 259, 303, 602, 839
LweI GCATC 2 cut(s) 184, 496
MaeI CTAG 1 cut(s) 23
MaeIII GTNAC 2 cut(s) 168, 303
MalI GATC 6 cut(s) 59, 387, 399, 550, 574, 727
MbiI CCGCTC 1 cut(s) 426
MboI GATC 6 cut(s) 57, 385, 397, 548, 572, 725
MboII GAAGA 9 cut(s) 20, 67, 152, 167, 170, 176, 728, 779, 810
MflI RGATCY 1 cut(s) 548
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 1 cut(s) 529
MlyI GAGTC 3 cut(s) 120, 176, 762
MnlI CCTC 5 cut(s) 4, 349, 370, 420, 489
MseI TTAA 2 cut(s) 318, 699
MslI CAYNNNNRTG 2 cut(s) 120, 393
MspA1I CMGCKG 1 cut(s) 66
MspR9I CCNGG 1 cut(s) 747
Mva1269I GAATGC 1 cut(s) 743
MvaI CCWGG 1 cut(s) 747
MwoI GCNNNNNNNGC 2 cut(s) 203, 247
NdeII GATC 6 cut(s) 57, 385, 397, 548, 572, 725
NlaIII CATG 3 cut(s) 119, 241, 356
NmeAIII GCCGAG 1 cut(s) 304
NmuCI GTSAC 1 cut(s) 168
PasI CCCWGGG 1 cut(s) 746
PceI AGGCCT 1 cut(s) 359
PctI GAATGC 1 cut(s) 743
PfeI GAWTC 1 cut(s) 214
PkrI GCNGC 8 cut(s) 65, 68, 249, 293, 296, 425, 592, 854
PleI GAGTC 3 cut(s) 119, 175, 761
PpsI GAGTC 3 cut(s) 119, 175, 761
Psp124BI GAGCTC 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 745
PspGI CCWGG 1 cut(s) 745
PspPI GGNCC 1 cut(s) 650
PstNI CAGNNNCTG 1 cut(s) 66
PsuI RGATCY 1 cut(s) 548
PvuII CAGCTG 1 cut(s) 66
RsaI GTAC 3 cut(s) 257, 326, 630
RsaNI GTAC 3 cut(s) 256, 325, 629
RseI CAYNNNNRTG 2 cut(s) 120, 393
SacI GAGCTC 1 cut(s) 48
SaqAI TTAA 2 cut(s) 318, 699
SatI GCNGC 8 cut(s) 64, 67, 248, 292, 295, 424, 591, 853
Sau3AI GATC 6 cut(s) 57, 385, 397, 548, 572, 725
Sau96I GGNCC 1 cut(s) 650
SchI GAGTC 3 cut(s) 120, 176, 762
ScrFI CCNGG 1 cut(s) 747
SduI GDGCHC 1 cut(s) 48
SetI ASST 6 cut(s) 48, 68, 148, 257, 469, 838
SfaNI GCATC 2 cut(s) 184, 496
SmiMI CAYNNNNRTG 2 cut(s) 120, 393
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 1 cut(s) 529
SseBI AGGCCT 1 cut(s) 359
SsiI CCGC 4 cut(s) 295, 424, 707, 855
SspMI CTAG 1 cut(s) 23
SstI GAGCTC 1 cut(s) 48
StuI AGGCCT 1 cut(s) 359
StyD4I CCNGG 1 cut(s) 745
TaaI ACNGT 4 cut(s) 382, 392, 601, 733
TaqI TCGA 1 cut(s) 781
TasI AATT 1 cut(s) 529
TatI WGTACW 2 cut(s) 324, 628
TauI GCSGC 2 cut(s) 297, 426
TfiI GAWTC 1 cut(s) 214
Tru1I TTAA 2 cut(s) 318, 699
Tru9I TTAA 2 cut(s) 318, 699
TscAI CASTG 2 cut(s) 387, 606
TseFI GTSAC 1 cut(s) 168
TseI GCWGC 6 cut(s) 63, 66, 247, 291, 590, 852
Tsp45I GTSAC 1 cut(s) 168
TspDTI ATGAA 3 cut(s) 68, 153, 177
TspRI CASTG 2 cut(s) 387, 606
XapI RAATTY 1 cut(s) 529
XcmI CCANNNNNNNNNTGG 2 cut(s) 122, 559
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.