Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002510.1

Orthogroup ID

OG0012119

Physical Location & Seq

Genomic Coordinates Reverse (-)

69176 .. 71924

Gene Structure 2749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002510.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atggaggaagagggtatagggctagttctggcgaaagccacagagctcagaatgaagatcagcagctgcttccacaaagacaatgacccattacccaaaaaggaaaatggagtccatgttgatggtgggtcgggagaggaagaaggtgatggtgaagaagatgaagagtcacagagacttttcaacatttgcgatgcccttgaagcccttgagaatcaactctctaacttacagactatgcaacaacagcaaaggtacgaaagagaagtttcccttgccgagattgaaagcagccgcaagatgttactgaacaagattaaagagtacaaagggaaggatttggaagtgatacatgaggcctctgcttttgctggtgaaacagtggatcacagtaatgatctcttgcttcctccatatccaagccgctctccacacacttttgttcttgaaaatggctacttgccacctacacataagcctctacgaaatggggtcatcaacaatgatgcaacaaatggagcaaagaaaaatttgagtgatacagagagatccaaaaactcaatgggattgcgatctgttcttagcacagcagccaagacagtgcttactcttgttggtgtggtatctgtacttagcctgtccggttttgggcctaaagtagtaagaagtaatactgctttcaatatattaggccgttttaagcaaccgccaactgaagaaaagagatcaactgttgaatgcccccctgggagagtccttgttctggaagatgggaaggctcgatgtgttgtgaaagaaagagttgaagttcctttctcttcagttgttgcaagacctgatgtaaactatggctgcggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Globin

Protein Analysis

286

Amino Acids

31.45

Weight (kDa)

5.54

Isoelectric Point (pI)

55.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16070 AT2G16070 AT2G16070
fragaria_vesca	FvH4_2g07780
malus_domestica	MD05G1071000.v1.1
prunus_persica	Prupe.8G107000_v2.0.a1
pyrus_communis	pycom05g06140 pycom10g06590
rosa_chinensis	RchiOBHm_Chr6g0262181
rosa_laevigata	RLG00000014450
rosa_multiflora	Rmu_co8439443.1_g000001 Rmu_sc0002510.1_g000018
rosa_roxburghii	Rroxscaffold_7G00207880
rosa_rugosa	Rorug05G0595400
rosa_samantha	Rh6AG115300 Rh6BG109400 Rh6CG106900 Rh6DG097400
rosa_wichuraiana	Rw6G010040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	426
AciI	CCGC	4 cut(s)	295, 424, 707, 855
AclWI	GGATC	2 cut(s)	393, 543
AcsI	RAATTY	1 cut(s)	529
AcuI	CTGAAG	2 cut(s)	735, 804
AfaI	GTAC	3 cut(s)	257, 326, 630
AfiI	CCNNNNNNNGG	2 cut(s)	648, 763
AgsI	TTSAA	7 cut(s)	184, 203, 287, 449, 682, 737, 806
AjnI	CCWGG	1 cut(s)	745
AluBI	AGCT	2 cut(s)	46, 66
AluI	AGCT	2 cut(s)	46, 66
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	2 cut(s)	393, 543
AlwNI	CAGNNNCTG	1 cut(s)	66
AoxI	GGCC	3 cut(s)	357, 650, 691
ApeKI	GCWGC	5 cut(s)	63, 66, 291, 590, 852
ApoI	RAATTY	1 cut(s)	529
AspS9I	GGNCC	1 cut(s)	650
AsuHPI	GGTGA	3 cut(s)	158, 164, 386
BanII	GRGCYC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	5 cut(s)	53, 75, 303, 602, 839
BccI	CCATC	3 cut(s)	116, 143, 764
BceAI	ACGGC	1 cut(s)	678
BciT130I	CCWGG	1 cut(s)	747
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	1 cut(s)	23
BisI	GCNGC	7 cut(s)	64, 67, 292, 295, 424, 591, 853
BlsI	GCNGC	7 cut(s)	65, 68, 293, 296, 425, 592, 854
Bme1390I	CCNGG	1 cut(s)	747
BmgT120I	GGNCC	1 cut(s)	650
BmrFI	CCNGG	1 cut(s)	747
BmsI	GCATC	2 cut(s)	184, 496
BpuEI	CTTGAG	1 cut(s)	230
BsaBI	GATNNNNATC	1 cut(s)	571
BsaJI	CCNNGG	2 cut(s)	745, 746
BsaWI	WCCGGW	1 cut(s)	641
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bsc4I	CCNNNNNNNGG	2 cut(s)	648, 763
Bse8I	GATNNNNATC	1 cut(s)	571
BseBI	CCWGG	1 cut(s)	747
BseDI	CCNNGG	2 cut(s)	745, 746
BseJI	GATNNNNATC	1 cut(s)	571
BseLI	CCNNNNNNNGG	2 cut(s)	648, 763
BseMII	CTCAG	1 cut(s)	61
BseXI	GCAGC	5 cut(s)	53, 75, 303, 602, 839
BshFI	GGCC	3 cut(s)	359, 652, 693
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	642
BslI	CCNNNNNNNGG	2 cut(s)	648, 763
BsmAI	GTCTC	1 cut(s)	169
BsmI	GAATGC	1 cut(s)	743
BsnI	GGCC	3 cut(s)	359, 652, 693
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	6 cut(s)	57, 385, 397, 548, 572, 725
BspACI	CCGC	4 cut(s)	295, 424, 707, 855
BspANI	GGCC	3 cut(s)	359, 652, 693
BspCNI	CTCAG	1 cut(s)	60
BspPI	GGATC	2 cut(s)	393, 543
BsrBI	CCGCTC	1 cut(s)	426
BssECI	CCNNGG	2 cut(s)	745, 746
BssMI	GATC	6 cut(s)	57, 385, 397, 548, 572, 725
Bst2UI	CCWGG	1 cut(s)	747
Bst4CI	ACNGT	4 cut(s)	382, 392, 601, 733
Bst6I	CTCTTC	3 cut(s)	3, 159, 823
BstDEI	CTNAG	3 cut(s)	47, 581, 632
BstKTI	GATC	6 cut(s)	60, 388, 400, 551, 575, 728
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	6 cut(s)	57, 385, 397, 548, 572, 725
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 247
BstNI	CCWGG	1 cut(s)	747
BstSCI	CCNGG	1 cut(s)	745
BstV1I	GCAGC	5 cut(s)	53, 75, 303, 602, 839
BstX2I	RGATCY	1 cut(s)	548
BstXI	CCANNNNNNTGG	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	548
BsuRI	GGCC	3 cut(s)	359, 652, 693
BtgZI	GCGATG	1 cut(s)	207
BtsIMutI	CAGTG	2 cut(s)	387, 606
CaiI	CAGNNNCTG	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	650
Csp6I	GTAC	3 cut(s)	256, 325, 629
CviAII	CATG	2 cut(s)	116, 353
CviQI	GTAC	3 cut(s)	256, 325, 629
DdeI	CTNAG	3 cut(s)	47, 581, 632
DpnI	GATC	6 cut(s)	59, 387, 399, 550, 574, 727
DpnII	GATC	6 cut(s)	57, 385, 397, 548, 572, 725
Eam1104I	CTCTTC	3 cut(s)	3, 159, 823
EarI	CTCTTC	3 cut(s)	3, 159, 823
Ecl136II	GAGCTC	1 cut(s)	46
Eco147I	AGGCCT	1 cut(s)	359
Eco24I	GRGCYC	1 cut(s)	48
Eco53kI	GAGCTC	1 cut(s)	46
Eco57I	CTGAAG	2 cut(s)	735, 804
EcoICRI	GAGCTC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	745
EcoT38I	GRGCYC	1 cut(s)	48
FaeI	CATG	2 cut(s)	119, 356
FaiI	YATR	8 cut(s)	17, 117, 239, 354, 415, 474, 686, 849
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FatI	CATG	2 cut(s)	115, 352
Fnu4HI	GCNGC	7 cut(s)	64, 67, 292, 295, 424, 591, 853
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	7 cut(s)	64, 67, 292, 295, 424, 591, 853
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	7 cut(s)	64, 67, 292, 295, 424, 591, 853
HaeIII	GGCC	3 cut(s)	359, 652, 693
HapII	CCGG	1 cut(s)	642
Hin1II	CATG	2 cut(s)	119, 356
HinfI	GANTC	4 cut(s)	111, 167, 214, 753
HpaII	CCGG	1 cut(s)	642
HphI	GGTGA	3 cut(s)	158, 164, 386
Hpy166II	GTNNAC	1 cut(s)	844
Hpy188I	TCNGA	1 cut(s)	50
Hpy188III	TCNNGA	3 cut(s)	132, 446, 764
Hpy8I	GTNNAC	1 cut(s)	844
HpyAV	CCTTC	3 cut(s)	137, 328, 769
HpyCH4III	ACNGT	4 cut(s)	382, 392, 601, 733
HpyCH4V	TGCA	3 cut(s)	241, 509, 830
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 247
HpyF3I	CTNAG	3 cut(s)	47, 581, 632
Hsp92II	CATG	2 cut(s)	119, 356
Kzo9I	GATC	6 cut(s)	57, 385, 397, 548, 572, 725
LmnI	GCTCC	1 cut(s)	518
LpnPI	CCDG	8 cut(s)	14, 357, 650, 655, 732, 749, 759, 849
Lsp1109I	GCAGC	5 cut(s)	53, 75, 303, 602, 839
LweI	GCATC	2 cut(s)	184, 496
MaeI	CTAG	1 cut(s)	23
MaeIII	GTNAC	2 cut(s)	168, 303
MalI	GATC	6 cut(s)	59, 387, 399, 550, 574, 727
MbiI	CCGCTC	1 cut(s)	426
MboI	GATC	6 cut(s)	57, 385, 397, 548, 572, 725
MboII	GAAGA	9 cut(s)	20, 67, 152, 167, 170, 176, 728, 779, 810
MflI	RGATCY	1 cut(s)	548
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	1 cut(s)	529
MlyI	GAGTC	3 cut(s)	120, 176, 762
MnlI	CCTC	6 cut(s)	4, 130, 349, 370, 420, 489
MseI	TTAA	2 cut(s)	318, 699
MslI	CAYNNNNRTG	2 cut(s)	120, 393
MspA1I	CMGCKG	1 cut(s)	66
MspI	CCGG	1 cut(s)	642
MspR9I	CCNGG	1 cut(s)	747
Mva1269I	GAATGC	1 cut(s)	743
MvaI	CCWGG	1 cut(s)	747
MwoI	GCNNNNNNNGC	2 cut(s)	203, 247
NdeII	GATC	6 cut(s)	57, 385, 397, 548, 572, 725
NlaIII	CATG	2 cut(s)	119, 356
NmeAIII	GCCGAG	1 cut(s)	304
NmuCI	GTSAC	1 cut(s)	168
PasI	CCCWGGG	1 cut(s)	746
PceI	AGGCCT	1 cut(s)	359
PctI	GAATGC	1 cut(s)	743
PfeI	GAWTC	1 cut(s)	214
PkrI	GCNGC	7 cut(s)	65, 68, 293, 296, 425, 592, 854
PleI	GAGTC	3 cut(s)	119, 175, 761
PpsI	GAGTC	3 cut(s)	119, 175, 761
Psp124BI	GAGCTC	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	745
PspGI	CCWGG	1 cut(s)	745
PspPI	GGNCC	1 cut(s)	650
PstNI	CAGNNNCTG	1 cut(s)	66
PsuI	RGATCY	1 cut(s)	548
PvuII	CAGCTG	1 cut(s)	66
RsaI	GTAC	3 cut(s)	257, 326, 630
RsaNI	GTAC	3 cut(s)	256, 325, 629
RseI	CAYNNNNRTG	2 cut(s)	120, 393
SacI	GAGCTC	1 cut(s)	48
SaqAI	TTAA	2 cut(s)	318, 699
SatI	GCNGC	7 cut(s)	64, 67, 292, 295, 424, 591, 853
Sau3AI	GATC	6 cut(s)	57, 385, 397, 548, 572, 725
Sau96I	GGNCC	1 cut(s)	650
SchI	GAGTC	3 cut(s)	120, 176, 762
ScrFI	CCNGG	1 cut(s)	747
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	6 cut(s)	48, 68, 148, 257, 469, 838
SfaNI	GCATC	2 cut(s)	184, 496
SmiMI	CAYNNNNRTG	2 cut(s)	120, 393
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	1 cut(s)	529
SseBI	AGGCCT	1 cut(s)	359
SsiI	CCGC	4 cut(s)	295, 424, 707, 855
SspMI	CTAG	1 cut(s)	23
SstI	GAGCTC	1 cut(s)	48
StuI	AGGCCT	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	745
TaaI	ACNGT	4 cut(s)	382, 392, 601, 733
TaqI	TCGA	1 cut(s)	781
TasI	AATT	1 cut(s)	529
TatI	WGTACW	2 cut(s)	324, 628
TauI	GCSGC	2 cut(s)	297, 426
TfiI	GAWTC	1 cut(s)	214
Tru1I	TTAA	2 cut(s)	318, 699
Tru9I	TTAA	2 cut(s)	318, 699
TscAI	CASTG	2 cut(s)	387, 606
TseFI	GTSAC	1 cut(s)	168
TseI	GCWGC	5 cut(s)	63, 66, 291, 590, 852
Tsp45I	GTSAC	1 cut(s)	168
TspDTI	ATGAA	2 cut(s)	68, 177
TspRI	CASTG	2 cut(s)	387, 606
XapI	RAATTY	1 cut(s)	529
XcmI	CCANNNNNNNNNTGG	2 cut(s)	122, 559
XspI	CTAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.