AT2G16760
ERF Family

BEST Arabidopsis thaliana protein match is Calcium-dependent phosphotriesterase superfamily protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013143
Physical Location & Seq
Forward (+)
7275657 .. 7277285
1629 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G16760.1

Sequence Viewer

Length: 984 bp
ATGTCTCCCTCGTTTTGCTCCGGCCGATGCACCGCCGCGCTCTTCCTCGTTATCTCCGCCGTTCCAATAGCTTACCTCATCTCCTTAGAGCTAGCCGTTCCTTCTACACACGTCTTCTCTTACCAAAGCTCCGGCTTCTTCCGAGAGTGCGCCAAGTGGGACGATGTTGGTCGGAGATTCCTTGTCTCCTTCATGGACGGTGGCGGAGTCGGCGAGATTGTTCCTAAAGACTCCGACGACGTTCTTGAAGAAGTCACTTTGGTCAAAGACGTTGACCTCGCCGGTAACGCTTCCCTAGGAATCGCTATCGACCACGTCAGAAACCGTCTCCTTGTCGCCGTCGCCGACTTGCTTGGAAATCGTTATAGTGCTTTAGCTGCTTATGATTTGTCCACGTGGCGTCGTCTCTTCCTCGCCGAACTTAGTGGTCAGAGTAAAGAGAAAACATTTGCAGACGATGTAGCTGTAGATGAACAAGGCAATGCTTATGTGACTGATGCAAAAGCTAGTAAAATATGGAAAGTTGATGTTAATGGGAAGCTTGTGAACACTATTACAAGTCCTCTCTTTACACCACCTGGATGGTACAATAACCTTGTTGCTCTTAACGGCATTGTTTATCACCCCGACGGCTTTCTTATCGTTATCCATACTTTCTCTGGTTACTTATACAAAATTGACTTAACCAATGGGGATGTTAGTAATCAAGTTAGTGTCATTGATGTTTCTGGTGGTACATTGAGGTTTGGAGATGGGCTTGAGTTGTTGTCTCCAACCAAGATTGTTGTTGCAGGTAGCTCGTCTACAAAACTGGTTGAGAGTTCAGATGGGTGGAGAACCGCTTCGGTGACGGGTTGGTTCAGCAGCGGTATGGTTCATCGGGTAGTCTCGTCGGCTACAGTGAAGGAAGGAAGAGTTTATTTAAACCATATTGTTGGATTTGGGTCTAAAAAGAAACACGTACTTGTAGAAGCTGTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SGL

Protein Analysis

327

Amino Acids

35.31

Weight (kDa)

5.81

Isoelectric Point (pI)

27.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SGL PF08450 97 - 270 6.9e-06 SMP-30/Gluconolactonase/LRE-like region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16760 AT2G47370 AT2G47370 AT5G28660
fragaria_vesca FvH4_5g39130
malus_domestica MD03G1294500.v1.1
prunus_persica Prupe.8G266600_v2.0.a1
pyrus_communis pycom03g23290
rosa_chinensis RchiOBHm_Chr7g0241121
rosa_laevigata RLG00000000595
rosa_multiflora Rmu_sc0008150.1_g000002
rosa_roxburghii Rroxscaffold_3G00219250
rosa_rugosa Rorug07G0342600
rosa_samantha Rh7AG497700 Rh7BG468500 Rh7CG514600 Rh7DG481900
rosa_wichuraiana Rw7G041990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 782
AccI GTMKAC 1 cut(s) 803
AccII CGCG 1 cut(s) 38
AciI CCGC 6 cut(s) 33, 36, 57, 204, 840, 867
AcoI YGGCCR 1 cut(s) 22
AcvI CACGTG 1 cut(s) 396
AcyI GRCGYC 1 cut(s) 400
AfaI GTAC 3 cut(s) 587, 736, 963
AflIII ACRYGT 2 cut(s) 109, 958
AgsI TTSAA 1 cut(s) 248
AjiI CACGTC 2 cut(s) 112, 316
AjnI CCWGG 1 cut(s) 577
AluBI AGCT 9 cut(s) 71, 91, 129, 377, 464, 506, 541, 798, 974
AluI AGCT 9 cut(s) 71, 91, 129, 377, 464, 506, 541, 798, 974
Alw26I GTCTC 6 cut(s) 9, 190, 332, 410, 774, 892
AoxI GGCC 1 cut(s) 22
ApeKI GCWGC 2 cut(s) 377, 864
Asp700I GAANNNNTTC 1 cut(s) 841
AspA2I CCTAGG 1 cut(s) 295
AspLEI GCGC 2 cut(s) 40, 152
AsuHPI GGTGA 2 cut(s) 614, 859
AsuNHI GCTAGC 1 cut(s) 91
AvrII CCTAGG 1 cut(s) 295
BbrPI CACGTG 1 cut(s) 396
BbsI GAAGAC 1 cut(s) 106
BbvI GCAGC 2 cut(s) 364, 876
BccI CCATC 3 cut(s) 576, 746, 821
BceAI ACGGC 5 cut(s) 44, 80, 323, 625, 646
BcgI CGANNNNNNTGC 2 cut(s) 780, 814
BciT130I CCWGG 1 cut(s) 579
BcoDI GTCTC 6 cut(s) 9, 190, 332, 410, 774, 892
BfaI CTAG 3 cut(s) 92, 296, 507
BfmI CTRYAG 2 cut(s) 465, 897
BfuAI ACCTGC 1 cut(s) 782
BisI GCNGC 3 cut(s) 36, 378, 865
BlnI CCTAGG 1 cut(s) 295
BlsI GCNGC 3 cut(s) 37, 379, 866
Bme1390I CCNGG 1 cut(s) 579
BmgBI CACGTC 2 cut(s) 112, 316
BmrFI CCNGG 1 cut(s) 579
BmsI GCATC 2 cut(s) 17, 487
BmtI GCTAGC 1 cut(s) 95
BpiI GAAGAC 1 cut(s) 106
BpuEI CTTGAG 1 cut(s) 779
BsaAI YACGTR 2 cut(s) 396, 961
BsaHI GRCGYC 1 cut(s) 400
BsaJI CCNNGG 1 cut(s) 295
BsaXI ACNNNNNCTCC 4 cut(s) 65, 95, 113, 143
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 816
Bse3DI GCAATG 1 cut(s) 487
BseBI CCWGG 1 cut(s) 579
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 2 cut(s) 587, 700
BseMI GCAATG 1 cut(s) 487
BseNI ACTGG 1 cut(s) 816
BseX3I CGGCCG 1 cut(s) 22
BseXI GCAGC 2 cut(s) 364, 876
Bsh1236I CGCG 1 cut(s) 38
Bsh1285I CGRYCG 1 cut(s) 25
BshFI GGCC 1 cut(s) 24
BsiEI CGRYCG 1 cut(s) 25
BsiSI CCGG 3 cut(s) 21, 132, 282
BslFI GGGAC 1 cut(s) 173
BsmAI GTCTC 6 cut(s) 9, 190, 332, 410, 774, 892
BsmBI CGTCTC 2 cut(s) 332, 410
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 1 cut(s) 24
BspACI CCGC 6 cut(s) 33, 36, 57, 204, 840, 867
BspANI GGCC 1 cut(s) 24
BspFNI CGCG 1 cut(s) 38
BspMI ACCTGC 1 cut(s) 782
BspOI GCTAGC 1 cut(s) 95
BspQI GCTCTTC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 487
BsrFI RCCGGY 1 cut(s) 281
BsrI ACTGG 1 cut(s) 816
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 1 cut(s) 295
BssNI GRCGYC 1 cut(s) 400
BssT1I CCWWGG 1 cut(s) 295
Bst2UI CCWGG 1 cut(s) 579
Bst4CI ACNGT 3 cut(s) 200, 326, 901
Bst6I CTCTTC 3 cut(s) 47, 413, 907
BstACI GRCGYC 1 cut(s) 400
BstBAI YACGTR 2 cut(s) 396, 961
BstC8I GCNNGC 1 cut(s) 93
BstDEI CTNAG 2 cut(s) 85, 422
BstF5I GGATG 2 cut(s) 587, 700
BstFNI CGCG 1 cut(s) 38
BstHHI GCGC 2 cut(s) 40, 152
BstMAI GTCTC 6 cut(s) 9, 190, 332, 410, 774, 892
BstMCI CGRYCG 1 cut(s) 25
BstMWI GCNNNNNNNGC 3 cut(s) 210, 287, 377
BstNI CCWGG 1 cut(s) 579
BstSCI CCNGG 1 cut(s) 577
BstSFI CTRYAG 2 cut(s) 465, 897
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 2 cut(s) 364, 876
BstV2I GAAGAC 1 cut(s) 106
BstXI CCANNNNNNTGG 2 cut(s) 582, 935
BstZI CGGCCG 1 cut(s) 22
BsuRI GGCC 1 cut(s) 24
BtrI CACGTC 2 cut(s) 112, 316
BtsCI GGATG 2 cut(s) 587, 700
BtsIMutI CAGTG 1 cut(s) 906
BveI ACCTGC 1 cut(s) 782
Cac8I GCNNGC 1 cut(s) 93
CfoI GCGC 2 cut(s) 40, 152
Cfr10I RCCGGY 1 cut(s) 281
CseI GACGC 1 cut(s) 389
Csp6I GTAC 3 cut(s) 586, 735, 962
CviAII CATG 1 cut(s) 193
CviQI GTAC 3 cut(s) 586, 735, 962
DdeI CTNAG 2 cut(s) 85, 422
DraI TTTAAA 1 cut(s) 924
EaeI YGGCCR 1 cut(s) 22
EagI CGGCCG 1 cut(s) 22
Eam1104I CTCTTC 3 cut(s) 47, 413, 907
EarI CTCTTC 3 cut(s) 47, 413, 907
EciI GGCGGA 2 cut(s) 46, 219
EclXI CGGCCG 1 cut(s) 22
Eco130I CCWWGG 1 cut(s) 295
Eco52I CGGCCG 1 cut(s) 22
Eco72I CACGTG 1 cut(s) 396
EcoRII CCWGG 1 cut(s) 577
EcoT14I CCWWGG 1 cut(s) 295
ErhI CCWWGG 1 cut(s) 295
Esp3I CGTCTC 2 cut(s) 332, 410
FaeI CATG 1 cut(s) 196
FaiI YATR 9 cut(s) 194, 366, 384, 489, 517, 651, 670, 872, 930
FaqI GGGAC 1 cut(s) 173
FatI CATG 1 cut(s) 192
FblI GTMKAC 1 cut(s) 803
Fnu4HI GCNGC 3 cut(s) 36, 378, 865
FokI GGATG 2 cut(s) 594, 707
Fsp4HI GCNGC 3 cut(s) 36, 378, 865
FspBI CTAG 3 cut(s) 92, 296, 507
GlaI GCGC 2 cut(s) 39, 151
GluI GCNGC 3 cut(s) 36, 378, 865
HaeIII GGCC 1 cut(s) 24
HapII CCGG 3 cut(s) 21, 132, 282
HgaI GACGC 1 cut(s) 389
HhaI GCGC 2 cut(s) 40, 152
Hin1I GRCGYC 1 cut(s) 400
Hin1II CATG 1 cut(s) 196
Hin6I GCGC 2 cut(s) 38, 150
HinP1I GCGC 2 cut(s) 38, 150
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HindIII AAGCTT 1 cut(s) 539
HinfI GANTC 4 cut(s) 177, 207, 230, 300
HpaII CCGG 3 cut(s) 21, 132, 282
HphI GGTGA 2 cut(s) 614, 859
Hpy166II GTNNAC 4 cut(s) 274, 393, 547, 804
Hpy188I TCNGA 6 cut(s) 143, 174, 235, 320, 432, 826
Hpy188III TCNNGA 1 cut(s) 245
Hpy8I GTNNAC 4 cut(s) 274, 393, 547, 804
Hpy99I CGWCG 6 cut(s) 239, 242, 344, 405, 632, 895
HpyAV CCTTC 4 cut(s) 111, 199, 898, 902
HpyCH4III ACNGT 3 cut(s) 200, 326, 901
HpyCH4IV ACGT 6 cut(s) 111, 240, 270, 315, 395, 960
HpyCH4V TGCA 4 cut(s) 30, 452, 500, 791
HpyF10VI GCNNNNNNNGC 3 cut(s) 210, 287, 377
HpyF3I CTNAG 2 cut(s) 85, 422
HpySE526I ACGT 6 cut(s) 111, 240, 270, 315, 395, 960
Hsp92I GRCGYC 1 cut(s) 400
Hsp92II CATG 1 cut(s) 196
HspAI GCGC 2 cut(s) 38, 150
LguI GCTCTTC 1 cut(s) 47
LmnI GCTCC 2 cut(s) 23, 134
LpnPI CCDG 9 cut(s) 34, 145, 295, 564, 591, 645, 714, 777, 797
Lsp1109I GCAGC 2 cut(s) 364, 876
LweI GCATC 2 cut(s) 17, 487
MaeI CTAG 3 cut(s) 92, 296, 507
MaeII ACGT 6 cut(s) 111, 240, 270, 315, 395, 960
MaeIII GTNAC 5 cut(s) 253, 284, 490, 662, 847
MboII GAAGA 6 cut(s) 34, 106, 130, 260, 400, 924
MluCI AATT 1 cut(s) 675
MlyI GAGTC 2 cut(s) 216, 224
MmeI TCCRAC 4 cut(s) 152, 258, 797, 916
MnlI CCTC 7 cut(s) 19, 56, 86, 287, 422, 573, 735
MroXI GAANNNNTTC 1 cut(s) 841
MseI TTAA 4 cut(s) 531, 606, 683, 923
MslI CAYNNNNRTG 1 cut(s) 580
MspA1I CMGCKG 1 cut(s) 867
MspI CCGG 3 cut(s) 21, 132, 282
MspR9I CCNGG 1 cut(s) 579
MvaI CCWGG 1 cut(s) 579
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 3 cut(s) 210, 287, 377
NheI GCTAGC 1 cut(s) 91
NlaIII CATG 1 cut(s) 196
NmuCI GTSAC 3 cut(s) 253, 490, 847
PciSI GCTCTTC 1 cut(s) 47
PcsI WCGNNNNNNNCGW 1 cut(s) 342
PdmI GAANNNNTTC 1 cut(s) 841
PfeI GAWTC 2 cut(s) 177, 300
PflFI GACNNNGTC 1 cut(s) 314
PkrI GCNGC 3 cut(s) 37, 379, 866
PleI GAGTC 2 cut(s) 215, 224
PmaCI CACGTG 1 cut(s) 396
PmlI CACGTG 1 cut(s) 396
PpsI GAGTC 2 cut(s) 215, 224
Ppu21I YACGTR 2 cut(s) 396, 961
Psp6I CCWGG 1 cut(s) 577
PspCI CACGTG 1 cut(s) 396
PspGI CCWGG 1 cut(s) 577
PsyI GACNNNGTC 1 cut(s) 314
RsaI GTAC 3 cut(s) 587, 736, 963
RsaNI GTAC 3 cut(s) 586, 735, 962
RseI CAYNNNNRTG 1 cut(s) 580
SapI GCTCTTC 1 cut(s) 47
SaqAI TTAA 4 cut(s) 531, 606, 683, 923
SatI GCNGC 3 cut(s) 36, 378, 865
SchI GAGTC 2 cut(s) 216, 224
ScrFI CCNGG 1 cut(s) 579
SfaNI GCATC 2 cut(s) 17, 487
SfcI CTRYAG 2 cut(s) 465, 897
SmiMI CAYNNNNRTG 1 cut(s) 580
SmlI CTYRAG 1 cut(s) 758
SmoI CTYRAG 1 cut(s) 758
Sse9I AATT 1 cut(s) 675
SsiI CCGC 6 cut(s) 33, 36, 57, 204, 840, 867
SspMI CTAG 3 cut(s) 92, 296, 507
StyD4I CCNGG 1 cut(s) 577
StyI CCWWGG 1 cut(s) 295
TaaI ACNGT 3 cut(s) 200, 326, 901
TaiI ACGT 6 cut(s) 114, 243, 273, 318, 398, 963
TaqI TCGA 1 cut(s) 309
TasI AATT 1 cut(s) 675
TauI GCSGC 1 cut(s) 38
TfiI GAWTC 2 cut(s) 177, 300
Tru1I TTAA 4 cut(s) 531, 606, 683, 923
Tru9I TTAA 4 cut(s) 531, 606, 683, 923
TscAI CASTG 1 cut(s) 906
TseFI GTSAC 3 cut(s) 253, 490, 847
TseI GCWGC 2 cut(s) 377, 864
Tsp45I GTSAC 3 cut(s) 253, 490, 847
TspDTI ATGAA 3 cut(s) 181, 486, 866
TspRI CASTG 1 cut(s) 906
Tth111I GACNNNGTC 1 cut(s) 314
XcmI CCANNNNNNNNNTGG 1 cut(s) 656
XmaJI CCTAGG 1 cut(s) 295
XmiI GTMKAC 1 cut(s) 803
XmnI GAANNNNTTC 1 cut(s) 841
XspI CTAG 3 cut(s) 92, 296, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.