AT5G28660
ERF Family

BEST Arabidopsis thaliana protein match is Calcium-dependent phosphotriesterase superfamily protein (TAIR

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
10683218 .. 10683926
709 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G28660.1

Sequence Viewer

Length: 525 bp
ATGGACGGCGGCGGCGGTATCGGCGAGCTTGTTCCTACTAAAGATTCCGACAATGTTCTTGAGGAAGTCACTTTGGTCAATGACGTTGACCTCGCCGATAACTCTTCCAACGGATTCGTTATCGACCGCCACCGAAACCGTCTTCTCCTCGCTGTCGGCGATTTGCTTGGAAATCGTTATAGTGCTTTAGTTGCCTATGATTTGTCCACGTGGCGTCATCTCTTCCTCACAGTGCTTAGCAGCCATAAGATAACATACGCAGACGATGTAGCTGTTGATACACAAGGGAATGCTTATGTATCTGATGCAAAAGGAGGTAAAATATGGATTGTTGATGTTAATGGAAAGCTTGTGTACACTATTAGAAGCCCTCTCTTCACTTCACCTGTCACTATCATTGACGTTTCTGGTGGCAATTTGAGGTTTGGTGATGGGCTTGAGTTCTTGTCTCCAACCAAAATTTCCAAATCGAAAACTCAATATGGATTGTTGAGAGAATTAGGGATTTCGATTTGGGAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

174

Amino Acids

18.98

Weight (kDa)

4.95

Isoelectric Point (pI)

21.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G16760 AT2G47370 AT2G47370 AT5G28660
fragaria_vesca FvH4_5g39130
malus_domestica MD03G1294500.v1.1
prunus_persica Prupe.8G266600_v2.0.a1
pyrus_communis pycom03g23290
rosa_chinensis RchiOBHm_Chr7g0241121
rosa_laevigata RLG00000000595
rosa_multiflora Rmu_sc0008150.1_g000002
rosa_roxburghii Rroxscaffold_3G00219250
rosa_rugosa Rorug07G0342600
rosa_samantha Rh7AG497700 Rh7BG468500 Rh7CG514600 Rh7DG481900
rosa_wichuraiana Rw7G041990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 9, 12, 15, 127
AcsI RAATTY 2 cut(s) 459, 518
AcvI CACGTG 1 cut(s) 210
AcyI GRCGYC 1 cut(s) 214
AfaI GTAC 1 cut(s) 356
AjuI GAANNNNNNNTTGG 2 cut(s) 445, 477
AluBI AGCT 3 cut(s) 28, 272, 349
AluI AGCT 3 cut(s) 28, 272, 349
Alw26I GTCTC 1 cut(s) 453
ApeKI GCWGC 1 cut(s) 240
ApoI RAATTY 2 cut(s) 459, 518
AsuHPI GGTGA 2 cut(s) 375, 440
BbrPI CACGTG 1 cut(s) 210
BbsI GAAGAC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 252
BccI CCATC 1 cut(s) 425
BceAI ACGGC 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 453
BisI GCNGC 3 cut(s) 10, 13, 241
BlpI GCTNAGC 1 cut(s) 236
BlsI GCNGC 3 cut(s) 11, 14, 242
BmsI GCATC 1 cut(s) 295
BpiI GAAGAC 1 cut(s) 134
Bpu1102I GCTNAGC 1 cut(s) 236
BpuEI CTTGAG 2 cut(s) 80, 458
BsaAI YACGTR 1 cut(s) 210
BsaHI GRCGYC 1 cut(s) 214
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 252
Bsh1285I CGRYCG 1 cut(s) 127
BsiEI CGRYCG 1 cut(s) 127
BsmAI GTCTC 1 cut(s) 453
BsmI GAATGC 1 cut(s) 295
Bsp1407I TGTACA 1 cut(s) 354
Bsp1720I GCTNAGC 1 cut(s) 236
BspACI CCGC 4 cut(s) 9, 12, 15, 127
BsrGI TGTACA 1 cut(s) 354
BssNI GRCGYC 1 cut(s) 214
Bst4CI ACNGT 2 cut(s) 140, 232
Bst6I CTCTTC 3 cut(s) 109, 227, 380
BstACI GRCGYC 1 cut(s) 214
BstAUI TGTACA 1 cut(s) 354
BstBAI YACGTR 1 cut(s) 210
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 236
BstMAI GTCTC 1 cut(s) 453
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 2 cut(s) 21, 191
BstV1I GCAGC 1 cut(s) 252
BstV2I GAAGAC 1 cut(s) 134
BtsIMutI CAGTG 1 cut(s) 237
Cac8I GCNNGC 1 cut(s) 26
CseI GACGC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 355
CviJI RGCY 6 cut(s) 28, 243, 272, 349, 369, 436
CviKI_1 RGCY 6 cut(s) 28, 243, 272, 349, 369, 436
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 1 cut(s) 236
Eam1104I CTCTTC 3 cut(s) 109, 227, 380
EarI CTCTTC 3 cut(s) 109, 227, 380
Eco72I CACGTG 1 cut(s) 210
FaiI YATR 7 cut(s) 180, 198, 246, 256, 297, 325, 483
Fnu4HI GCNGC 3 cut(s) 10, 13, 241
Fsp4HI GCNGC 3 cut(s) 10, 13, 241
GluI GCNGC 3 cut(s) 10, 13, 241
HgaI GACGC 1 cut(s) 203
Hin1I GRCGYC 1 cut(s) 214
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 2 cut(s) 44, 114
HphI GGTGA 2 cut(s) 375, 440
Hpy166II GTNNAC 4 cut(s) 88, 207, 355, 357
Hpy188I TCNGA 2 cut(s) 49, 304
Hpy188III TCNNGA 1 cut(s) 59
Hpy8I GTNNAC 4 cut(s) 88, 207, 355, 357
HpyCH4III ACNGT 2 cut(s) 140, 232
HpyCH4IV ACGT 3 cut(s) 84, 209, 402
HpyCH4V TGCA 1 cut(s) 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 191
HpyF3I CTNAG 1 cut(s) 236
HpySE526I ACGT 3 cut(s) 84, 209, 402
Hsp92I GRCGYC 1 cut(s) 214
LpnPI CCDG 2 cut(s) 393, 399
Lsp1109I GCAGC 1 cut(s) 252
LweI GCATC 1 cut(s) 295
MaeII ACGT 3 cut(s) 84, 209, 402
MaeIII GTNAC 2 cut(s) 67, 388
MboII GAAGA 4 cut(s) 96, 134, 214, 367
MluCI AATT 4 cut(s) 415, 459, 497, 518
MmeI TCCRAC 3 cut(s) 72, 132, 476
MnlI CCTC 7 cut(s) 55, 101, 158, 236, 308, 381, 414
MseI TTAA 1 cut(s) 339
Mva1269I GAATGC 1 cut(s) 295
MwoI GCNNNNNNNGC 2 cut(s) 21, 191
NmuCI GTSAC 2 cut(s) 67, 388
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PctI GAATGC 1 cut(s) 295
PfeI GAWTC 2 cut(s) 44, 114
PkrI GCNGC 3 cut(s) 11, 14, 242
PmaCI CACGTG 1 cut(s) 210
PmlI CACGTG 1 cut(s) 210
Ppu21I YACGTR 1 cut(s) 210
PspCI CACGTG 1 cut(s) 210
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 3 cut(s) 10, 13, 241
SfaNI GCATC 1 cut(s) 295
SmlI CTYRAG 2 cut(s) 59, 437
SmoI CTYRAG 2 cut(s) 59, 437
Sse9I AATT 4 cut(s) 415, 459, 497, 518
SsiI CCGC 4 cut(s) 9, 12, 15, 127
TaaI ACNGT 2 cut(s) 140, 232
TaiI ACGT 3 cut(s) 87, 212, 405
TaqI TCGA 3 cut(s) 123, 470, 509
TasI AATT 4 cut(s) 415, 459, 497, 518
TatI WGTACW 1 cut(s) 354
TauI GCSGC 2 cut(s) 12, 15
TfiI GAWTC 2 cut(s) 44, 114
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TscAI CASTG 1 cut(s) 237
TseFI GTSAC 2 cut(s) 67, 388
TseI GCWGC 1 cut(s) 240
Tsp45I GTSAC 2 cut(s) 67, 388
TspGWI ACGGA 1 cut(s) 126
TspRI CASTG 1 cut(s) 237
XapI RAATTY 2 cut(s) 459, 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.