Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002789

Physical Location & Seq

Genomic Coordinates Forward (+)

37746000 .. 37750074

Gene Structure 4075 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0342600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGCCAGCTGTCTTCTCTGCTTGTCACAGAGTACTCAAGGAGGTTCGTACAATGCTGCCAGGTTTTTCTCCTGCTAAAGTGTTGGATTTTGGTGCTGGCACGGGTTCGGCTTTCTGGGCACTACGAGAAGTCGGGCCGAATTCCTTGGAGAAAGTTAACTTAGTAGAGCCATCACAATCAATGCAGCGTGCAGGCCAGAGCCTTATACAAGGTCAGAAGAAGTTAACACTTACTCACAGTTATGCTACCCTCCAATCAATGACTAAAAGCATCAACAAATCAGAGAGAGAACATGACCTTGTAATTGCTTCCTATGTGCTTGGAGAGATACCATCGCTGAAGGATCGAATTACTGTAGTACGCCAACTTTGGGATCTTACGTGGGAAGTCCTGCAAAAAATACTCTTATCAAGTGCAGGGAAGAAAACGGTGGAGTACACAGTGCCATTAGCAGAGAAGACTAAAGACATGGCCATGTTTGCAGGTAAGACCACTCTGCATTATGTTGGTCATGTTGCGGTGGATTTGAAGGACAAGGCCACTGTGGTAGGTTGGACTGCAGCGCACTACGCAACTGAGGCAGCAGTGGAGGGAACCAAAGCAGCTGCAAGGTTGGAGCTCAAATGCACAGCAAGGAGGGCAGGAATGGAGCTCAAATGCACAGCAAGGGAGGCAGGGCGGATACTAGAACATGATCTATTTAGTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004399 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009555 GO:0009570 GO:0009628 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019752 GO:0032501 GO:0032502 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0048229 GO:0048856 GO:0050896 GO:0052803 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

Histidinol_dh

Protein Analysis

236

Amino Acids

25.9

Weight (kDa)

9.3

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rsm22	PF09243	1 - 126	1.4e-17	Mitochondrial small ribosomal subunit Rsm22
Methyltransf_23	PF13489	11 - 115	2.3e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63890 AT5G63890
fragaria_vesca	FvH4_3g10270 FvH4_3g10270 FvH4_3g10270 FvH4_3g10270 FvH4_3g10270 FvH4_3g10270 FvH4_3g10270
malus_domestica	MD05G1271100.v1.1 MD10G1251700.v1.1
prunus_persica	Prupe.4G091700_v2.0.a1 Prupe.4G091700_v2.0.a1 Prupe.4G091700_v2.0.a1 Prupe.4G091700_v2.0.a1 Prupe.4G091700_v2.0.a1
pyrus_communis	pycom05g25350 pycom10g20760
rosa_chinensis	RchiOBHm_Chr5g0016531 RchiOBHm_Chr7g0241131
rosa_laevigata	RLG00000000593
rosa_multiflora	Rmu_sc0006665.1_g000005 Rmu_sc0008150.1_g000003
rosa_roxburghii	Rroxscaffold_1G00060350 Rroxscaffold_3G00219240
rosa_rugosa	Rorug07G0342600 Rorug07G0342700 Rorug07G0342800 Rorug07G0342900
rosa_samantha	Rh5AG126900 Rh5BG125800 Rh5CG138500 Rh5DG126000 Rh7AG498000 Rh7BG468600 Rh7CG514700 Rh7DG482000
rosa_wichuraiana	Rw5G010990 Rw7G042000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	473
AciI	CCGC	2 cut(s)	518, 679
AclWI	GGATC	2 cut(s)	351, 381
AcoI	YGGCCR	1 cut(s)	471
AcsI	RAATTY	1 cut(s)	139
AcuI	CTGAAG	1 cut(s)	359
AfaI	GTAC	4 cut(s)	33, 49, 360, 437
AfiI	CCNNNNNNNGG	1 cut(s)	370
AgsI	TTSAA	1 cut(s)	529
AjnI	CCWGG	1 cut(s)	58
AluBI	AGCT	4 cut(s)	8, 605, 619, 652
AluI	AGCT	4 cut(s)	8, 605, 619, 652
Alw21I	GWGCWC	2 cut(s)	621, 654
AlwI	GGATC	2 cut(s)	351, 381
AoxI	GGCC	4 cut(s)	134, 193, 471, 537
ApeKI	GCWGC	6 cut(s)	55, 184, 560, 581, 602, 605
ApoI	RAATTY	1 cut(s)	139
AspLEI	GCGC	1 cut(s)	565
AspS9I	GGNCC	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	121
BalI	TGGCCA	1 cut(s)	473
BanII	GRGCYC	2 cut(s)	621, 654
BbsI	GAAGAC	2 cut(s)	4, 464
Bbv12I	GWGCWC	2 cut(s)	621, 654
BbvI	GCAGC	6 cut(s)	42, 196, 572, 592, 593, 614
BccI	CCATC	2 cut(s)	178, 340
BciT130I	CCWGG	1 cut(s)	60
BciVI	GTATCC	1 cut(s)	675
BfaI	CTAG	1 cut(s)	686
BfmI	CTRYAG	2 cut(s)	354, 558
BfuAI	ACCTGC	1 cut(s)	473
BfuI	GTATCC	1 cut(s)	675
BisI	GCNGC	6 cut(s)	56, 185, 561, 582, 603, 606
BlsI	GCNGC	6 cut(s)	57, 186, 562, 583, 604, 607
BmcAI	AGTACT	1 cut(s)	33
Bme1390I	CCNGG	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	595
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	1 cut(s)	279
BpiI	GAAGAC	2 cut(s)	4, 464
BpuEI	CTTGAG	1 cut(s)	20
BsaAI	YACGTR	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	370
BseBI	CCWGG	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	370
BseMII	CTCAG	1 cut(s)	567
BseSI	GKGCMC	1 cut(s)	121
BseXI	GCAGC	6 cut(s)	42, 196, 572, 592, 593, 614
BsgI	GTGCAG	2 cut(s)	210, 435
BshFI	GGCC	4 cut(s)	136, 195, 473, 539
BsiHKAI	GWGCWC	2 cut(s)	621, 654
BslI	CCNNNNNNNGG	1 cut(s)	370
BsnI	GGCC	4 cut(s)	136, 195, 473, 539
Bsp1286I	GDGCHC	3 cut(s)	121, 621, 654
Bsp143I	GATC	3 cut(s)	343, 373, 694
BspACI	CCGC	2 cut(s)	518, 679
BspANI	GGCC	4 cut(s)	136, 195, 473, 539
BspCNI	CTCAG	1 cut(s)	568
BspLI	GGNNCC	1 cut(s)	595
BspMAI	CTGCAG	1 cut(s)	562
BspMI	ACCTGC	1 cut(s)	473
BspPI	GGATC	2 cut(s)	351, 381
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	3 cut(s)	343, 373, 694
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	60
Bst4CI	ACNGT	5 cut(s)	239, 355, 430, 442, 544
BstBAI	YACGTR	1 cut(s)	381
BstC8I	GCNNGC	4 cut(s)	6, 97, 189, 193
BstDEI	CTNAG	2 cut(s)	160, 576
BstHHI	GCGC	1 cut(s)	565
BstKTI	GATC	3 cut(s)	346, 376, 697
BstMBI	GATC	3 cut(s)	343, 373, 694
BstMWI	GCNNNNNNNGC	6 cut(s)	116, 479, 569, 578, 638, 671
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	58
BstSFI	CTRYAG	2 cut(s)	354, 558
BstSLI	GKGCMC	1 cut(s)	121
BstV1I	GCAGC	6 cut(s)	42, 196, 572, 592, 593, 614
BstV2I	GAAGAC	2 cut(s)	4, 464
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BsuI	GTATCC	1 cut(s)	675
BsuRI	GGCC	4 cut(s)	136, 195, 473, 539
BtgZI	GCGATG	1 cut(s)	318
BtsI	GCAGTG	1 cut(s)	591
BtsIMutI	CAGTG	3 cut(s)	447, 540, 591
BveI	ACCTGC	1 cut(s)	473
Cac8I	GCNNGC	4 cut(s)	6, 97, 189, 193
CfoI	GCGC	1 cut(s)	565
Cfr13I	GGNCC	1 cut(s)	134
Csp6I	GTAC	4 cut(s)	32, 48, 359, 436
CviAII	CATG	5 cut(s)	293, 469, 475, 512, 692
CviQI	GTAC	4 cut(s)	32, 48, 359, 436
DdeI	CTNAG	2 cut(s)	160, 576
DpnI	GATC	3 cut(s)	345, 375, 696
DpnII	GATC	3 cut(s)	343, 373, 694
EaeI	YGGCCR	1 cut(s)	471
EciI	GGCGGA	1 cut(s)	694
Ecl136II	GAGCTC	2 cut(s)	619, 652
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	2 cut(s)	621, 654
Eco53kI	GAGCTC	2 cut(s)	619, 652
Eco57I	CTGAAG	1 cut(s)	359
EcoICRI	GAGCTC	2 cut(s)	619, 652
EcoRI	GAATTC	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	58
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	2 cut(s)	621, 654
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	5 cut(s)	296, 472, 478, 515, 695
FaiI	YATR	9 cut(s)	206, 243, 294, 315, 470, 476, 504, 513, 693
FatI	CATG	5 cut(s)	292, 468, 474, 511, 691
Fnu4HI	GCNGC	6 cut(s)	56, 185, 561, 582, 603, 606
FriOI	GRGCYC	2 cut(s)	621, 654
Fsp4HI	GCNGC	6 cut(s)	56, 185, 561, 582, 603, 606
FspBI	CTAG	1 cut(s)	686
GlaI	GCGC	1 cut(s)	564
GluI	GCNGC	6 cut(s)	56, 185, 561, 582, 603, 606
HaeIII	GGCC	4 cut(s)	136, 195, 473, 539
HhaI	GCGC	1 cut(s)	565
Hin1II	CATG	5 cut(s)	296, 472, 478, 515, 695
Hin6I	GCGC	1 cut(s)	563
HinP1I	GCGC	1 cut(s)	563
HincII	GTYRAC	2 cut(s)	157, 225
HindII	GTYRAC	2 cut(s)	157, 225
HpaI	GTTAAC	2 cut(s)	157, 225
Hpy166II	GTNNAC	3 cut(s)	157, 225, 438
Hpy188I	TCNGA	2 cut(s)	216, 283
Hpy8I	GTNNAC	3 cut(s)	157, 225, 438
HpyAV	CCTTC	2 cut(s)	334, 523
HpyCH4III	ACNGT	5 cut(s)	239, 355, 430, 442, 544
HpyCH4IV	ACGT	1 cut(s)	380
HpyF10VI	GCNNNNNNNGC	6 cut(s)	116, 479, 569, 578, 638, 671
HpyF3I	CTNAG	2 cut(s)	160, 576
HpySE526I	ACGT	1 cut(s)	380
Hsp92II	CATG	5 cut(s)	296, 472, 478, 515, 695
HspAI	GCGC	1 cut(s)	563
KspAI	GTTAAC	2 cut(s)	157, 225
Kzo9I	GATC	3 cut(s)	343, 373, 694
LmnI	GCTCC	2 cut(s)	616, 649
Lsp1109I	GCAGC	6 cut(s)	42, 196, 572, 592, 593, 614
LweI	GCATC	1 cut(s)	279
MaeI	CTAG	1 cut(s)	686
MaeII	ACGT	1 cut(s)	380
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	3 cut(s)	345, 375, 696
MboI	GATC	3 cut(s)	343, 373, 694
MboII	GAAGA	4 cut(s)	4, 229, 433, 469
MflI	RGATCY	1 cut(s)	373
MhlI	GDGCHC	3 cut(s)	121, 621, 654
MlsI	TGGCCA	1 cut(s)	473
MluCI	AATT	3 cut(s)	139, 303, 348
MluNI	TGGCCA	1 cut(s)	473
MmeI	TCCRAC	3 cut(s)	63, 533, 594
MnlI	CCTC	6 cut(s)	34, 260, 571, 583, 630, 664
Mox20I	TGGCCA	1 cut(s)	473
MscI	TGGCCA	1 cut(s)	473
MseI	TTAA	2 cut(s)	156, 224
MslI	CAYNNNNRTG	2 cut(s)	240, 473
Msp20I	TGGCCA	1 cut(s)	473
MspA1I	CMGCKG	2 cut(s)	8, 605
MspR9I	CCNGG	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	60
MwoI	GCNNNNNNNGC	6 cut(s)	116, 479, 569, 578, 638, 671
NdeII	GATC	3 cut(s)	343, 373, 694
NlaIII	CATG	5 cut(s)	296, 472, 478, 515, 695
NlaIV	GGNNCC	1 cut(s)	595
NmuCI	GTSAC	1 cut(s)	23
PkrI	GCNGC	6 cut(s)	57, 186, 562, 583, 604, 607
Ppu21I	YACGTR	1 cut(s)	381
Psp124BI	GAGCTC	2 cut(s)	621, 654
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	595
PspPI	GGNCC	1 cut(s)	134
PstI	CTGCAG	1 cut(s)	562
PsuI	RGATCY	1 cut(s)	373
PvuII	CAGCTG	2 cut(s)	8, 605
RsaI	GTAC	4 cut(s)	33, 49, 360, 437
RsaNI	GTAC	4 cut(s)	32, 48, 359, 436
RseI	CAYNNNNRTG	2 cut(s)	240, 473
SacI	GAGCTC	2 cut(s)	621, 654
SaqAI	TTAA	2 cut(s)	156, 224
SatI	GCNGC	6 cut(s)	56, 185, 561, 582, 603, 606
Sau3AI	GATC	3 cut(s)	343, 373, 694
Sau96I	GGNCC	1 cut(s)	134
ScaI	AGTACT	1 cut(s)	33
ScrFI	CCNGG	1 cut(s)	60
SduI	GDGCHC	3 cut(s)	121, 621, 654
SfaNI	GCATC	1 cut(s)	279
SfcI	CTRYAG	2 cut(s)	354, 558
SmiMI	CAYNNNNRTG	2 cut(s)	240, 473
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	3 cut(s)	139, 303, 348
SsiI	CCGC	2 cut(s)	518, 679
SspMI	CTAG	1 cut(s)	686
SstI	GAGCTC	2 cut(s)	621, 654
StyD4I	CCNGG	1 cut(s)	58
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	5 cut(s)	239, 355, 430, 442, 544
TaiI	ACGT	1 cut(s)	383
TaqI	TCGA	1 cut(s)	346
TasI	AATT	3 cut(s)	139, 303, 348
TatI	WGTACW	2 cut(s)	31, 435
Tru1I	TTAA	2 cut(s)	156, 224
Tru9I	TTAA	2 cut(s)	156, 224
TscAI	CASTG	3 cut(s)	447, 547, 591
TseFI	GTSAC	1 cut(s)	23
TseI	GCWGC	6 cut(s)	55, 184, 560, 581, 602, 605
Tsp45I	GTSAC	1 cut(s)	23
TspRI	CASTG	3 cut(s)	447, 547, 591
XapI	RAATTY	1 cut(s)	139
XspI	CTAG	1 cut(s)	686
ZrmI	AGTACT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.