Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002789

Physical Location & Seq

Genomic Coordinates Reverse (-)

37793216 .. 37795029

Gene Structure 1814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0342800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGTCGTCGTCACTGGTTTGTCCTCGTCCTCGTGTTATGGTCAATGGAATAAGAAGAATGAGAACCTTTCGTTTCTTCTGGTGCCGCCATTGCCAACATACTGTAAGAATTGCCTCTTCCAACCCATATGGATTTCAATGTCACTATTGCTCCAATGAGCTCAATCATGAGATCGATGTATTGAGGCCTGCTGCCTCTATCAATAACCACCTTCAAGCCCTAGAACCTTCCCCGGCTGCCCGCTTACTTCAAAACCTAGCTCTCGTCCTCGATCCTTCCCCTCTGAGGCACCACGGACGACTTCGATGGCAAATCGAAACCGACAATGAGCCAGTTGATCATCCACGGTCTTGGATCACCCTCCAGTTCGAGAGACCACCAAGACTTGTAGTTCCCGTACCACAAAATGCCACCCTCGACGAGGATCATACTAATAACGCTGCTACTTTCGAGGGAACAATAAACGAGGTTCCGAATGAGCGTCGGGGGCCATCACCAGCGCCCAGTTGGGCAATCGATGGATTGCCTACGGTGAAAGTCACGGAAGAGGGGTTGGTGAAGGAACCCGGCTGCCCGGTTTGCAAGGAAGGGTTTGTGGTTGGTGGAGAAGTAAGAGAAATGCCATGCAAGCATGTGTATCATTCTGGTTGCATAGTCCCTTGGCTGAGCTTACACAATACTTGTCCAGTTTGCCGATATGAACTAAATAATGGGATCGATCAGTTTGGAGATCGTAATGAAAATTATTACGCAGAGGAGGAAGAAGAGGTGACGTCACCACATTGGTGGTGGAATCAGTTTCTTTCCTTCTGGCCATTTCGTGCATTAGTTCATTGGAGACAAAGTTACCTTGATAACCAAGCAAGGCGTCAAGATAGAACCTGGTGGTCCTCGATCTTGGATCGTTCTATTACTTCTATAGCTCAATTAATAAGTGGTGATGTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004399 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009555 GO:0009570 GO:0009628 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019752 GO:0032501 GO:0032502 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0048229 GO:0048856 GO:0050896 GO:0052803 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

Histidinol_dh

Protein Analysis

316

Amino Acids

36.49

Weight (kDa)

6.27

Isoelectric Point (pI)

61.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	191 - 232	1.1e-12	Ring finger domain
zf-C3HC4_2	PF13923	191 - 231	5.2e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	191 - 218	3.6e-07	RING-like zinc finger
zf-C3HC4	PF00097	191 - 231	9.2e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63890 AT5G63890
fragaria_vesca	FvH4_3g10270 FvH4_3g10270 FvH4_3g10270 FvH4_3g10270 FvH4_3g10270 FvH4_3g10270 FvH4_3g10270
malus_domestica	MD05G1271100.v1.1 MD10G1251700.v1.1
prunus_persica	Prupe.4G091700_v2.0.a1 Prupe.4G091700_v2.0.a1 Prupe.4G091700_v2.0.a1 Prupe.4G091700_v2.0.a1 Prupe.4G091700_v2.0.a1
pyrus_communis	pycom05g25350 pycom10g20760
rosa_chinensis	RchiOBHm_Chr5g0016531 RchiOBHm_Chr7g0241131
rosa_laevigata	RLG00000000593
rosa_multiflora	Rmu_sc0006665.1_g000005 Rmu_sc0008150.1_g000003
rosa_roxburghii	Rroxscaffold_1G00060350 Rroxscaffold_3G00219240
rosa_rugosa	Rorug07G0342600 Rorug07G0342700 Rorug07G0342800 Rorug07G0342900
rosa_samantha	Rh5AG126900 Rh5BG125800 Rh5CG138500 Rh5DG126000 Rh7AG498000 Rh7BG468600 Rh7CG514700 Rh7DG482000
rosa_wichuraiana	Rw5G010990 Rw7G042000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	776
AccB1I	GGYRCC	2 cut(s)	81, 288
AciI	CCGC	2 cut(s)	85, 241
AclWI	GGATC	5 cut(s)	266, 362, 432, 722, 909
AcoI	YGGCCR	1 cut(s)	812
AcyI	GRCGYC	2 cut(s)	773, 868
AfaI	GTAC	1 cut(s)	399
AfiI	CCNNNNNNNGG	2 cut(s)	285, 421
AgsI	TTSAA	3 cut(s)	137, 215, 251
AjnI	CCWGG	1 cut(s)	881
AleI	CACNNNNGTG	1 cut(s)	784
AluBI	AGCT	4 cut(s)	160, 260, 669, 923
AluI	AGCT	4 cut(s)	160, 260, 669, 923
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	2 cut(s)	367, 832
AlwI	GGATC	5 cut(s)	266, 362, 432, 722, 909
AoxI	GGCC	3 cut(s)	185, 488, 812
ApeKI	GCWGC	4 cut(s)	191, 236, 440, 570
AseI	ATTAAT	1 cut(s)	929
AspLEI	GCGC	1 cut(s)	502
AspS9I	GGNCC	2 cut(s)	488, 888
AsuC2I	CCSGG	3 cut(s)	233, 567, 575
AsuHPI	GGTGA	7 cut(s)	349, 486, 544, 568, 768, 781, 950
AvaII	GGWCC	1 cut(s)	888
BalI	TGGCCA	1 cut(s)	814
BanI	GGYRCC	2 cut(s)	81, 288
BanII	GRGCYC	1 cut(s)	162
BauI	CACGAG	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	4 cut(s)	178, 223, 427, 557
BccI	CCATC	3 cut(s)	300, 499, 512
BciT130I	CCWGG	1 cut(s)	883
BclI	TGATCA	1 cut(s)	337
BcnI	CCSGG	3 cut(s)	233, 567, 575
BcoDI	GTCTC	2 cut(s)	367, 832
BfaI	CTAG	2 cut(s)	221, 257
BfmI	CTRYAG	1 cut(s)	918
BfoI	RGCGCY	1 cut(s)	503
BisI	GCNGC	5 cut(s)	85, 192, 237, 441, 571
BlpI	GCTNAGC	1 cut(s)	665
BlsI	GCNGC	5 cut(s)	86, 193, 238, 442, 572
Bme1390I	CCNGG	4 cut(s)	233, 567, 575, 883
Bme18I	GGWCC	1 cut(s)	888
BmgT120I	GGNCC	2 cut(s)	488, 888
BmiI	GGNNCC	5 cut(s)	83, 290, 471, 489, 564
BmrFI	CCNGG	4 cut(s)	233, 567, 575, 883
BmrI	ACTGGG	1 cut(s)	498
BmuI	ACTGGG	1 cut(s)	498
BpmI	CTGGAG	1 cut(s)	347
Bpu1102I	GCTNAGC	1 cut(s)	665
BpuMI	CCSGG	3 cut(s)	233, 567, 575
Bsa29I	ATCGAT	3 cut(s)	174, 516, 717
BsaHI	GRCGYC	2 cut(s)	773, 868
BsaI	GGTCTC	1 cut(s)	367
BsaJI	CCNNGG	4 cut(s)	231, 292, 344, 659
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 829, 859
Bsc4I	CCNNNNNNNGG	2 cut(s)	285, 421
Bse1I	ACTGG	5 cut(s)	18, 332, 364, 504, 686
Bse3DI	GCAATG	1 cut(s)	88
BseBI	CCWGG	1 cut(s)	883
BseCI	ATCGAT	3 cut(s)	174, 516, 717
BseDI	CCNNGG	4 cut(s)	231, 292, 344, 659
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	2 cut(s)	285, 421
BseMI	GCAATG	1 cut(s)	88
BseMII	CTCAG	2 cut(s)	275, 656
BseNI	ACTGG	5 cut(s)	18, 332, 364, 504, 686
BseRI	GAGGAG	1 cut(s)	770
BseXI	GCAGC	4 cut(s)	178, 223, 427, 557
BshFI	GGCC	3 cut(s)	187, 490, 814
BshNI	GGYRCC	2 cut(s)	81, 288
BshVI	ATCGAT	3 cut(s)	174, 516, 717
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	3 cut(s)	233, 567, 575
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	2 cut(s)	285, 421
BsmAI	GTCTC	2 cut(s)	367, 832
BsmFI	GGGAC	1 cut(s)	641
BsnI	GGCC	3 cut(s)	187, 490, 814
Bso31I	GGTCTC	1 cut(s)	367
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp1720I	GCTNAGC	1 cut(s)	665
BspACI	CCGC	2 cut(s)	85, 241
BspANI	GGCC	3 cut(s)	187, 490, 814
BspCNI	CTCAG	2 cut(s)	276, 657
BspDI	ATCGAT	3 cut(s)	174, 516, 717
BspHI	TCATGA	1 cut(s)	166
BspLI	GGNNCC	5 cut(s)	83, 290, 471, 489, 564
BspPI	GGATC	5 cut(s)	266, 362, 432, 722, 909
BspT107I	GGYRCC	2 cut(s)	81, 288
BspTNI	GGTCTC	1 cut(s)	367
BsrDI	GCAATG	1 cut(s)	88
BsrI	ACTGG	5 cut(s)	18, 332, 364, 504, 686
BssECI	CCNNGG	4 cut(s)	231, 292, 344, 659
BssNI	GRCGYC	2 cut(s)	773, 868
BssSI	CACGAG	1 cut(s)	30
BssT1I	CCWWGG	1 cut(s)	659
Bst2BI	CACGAG	1 cut(s)	30
Bst2UI	CCWGG	1 cut(s)	883
Bst4CI	ACNGT	3 cut(s)	103, 348, 532
Bst6I	CTCTTC	3 cut(s)	121, 540, 759
BstACI	GRCGYC	2 cut(s)	773, 868
BstC8I	GCNNGC	3 cut(s)	189, 241, 629
BstDEI	CTNAG	2 cut(s)	284, 665
BstDSI	CCRYGG	2 cut(s)	292, 344
BstENI	CCTNNNNNAGG	1 cut(s)	419
BstF5I	GGATG	1 cut(s)	340
BstH2I	RGCGCY	1 cut(s)	503
BstHHI	GCGC	1 cut(s)	502
BstMAI	GTCTC	2 cut(s)	367, 832
BstMWI	GCNNNNNNNGC	4 cut(s)	90, 487, 579, 628
BstNI	CCWGG	1 cut(s)	883
BstNSI	RCATGY	1 cut(s)	635
BstSCI	CCNGG	4 cut(s)	231, 565, 573, 881
BstSFI	CTRYAG	1 cut(s)	918
BstV1I	GCAGC	4 cut(s)	178, 223, 427, 557
BstXI	CCANNNNNNTGG	2 cut(s)	351, 786
Bsu15I	ATCGAT	3 cut(s)	174, 516, 717
BsuRI	GGCC	3 cut(s)	187, 490, 814
BsuTUI	ATCGAT	3 cut(s)	174, 516, 717
BtgI	CCRYGG	2 cut(s)	292, 344
BtsCI	GGATG	1 cut(s)	340
BtsIMutI	CAGTG	1 cut(s)	11
Cac8I	GCNNGC	3 cut(s)	189, 241, 629
CciI	TCATGA	1 cut(s)	166
CfoI	GCGC	1 cut(s)	502
Cfr13I	GGNCC	2 cut(s)	488, 888
ClaI	ATCGAT	3 cut(s)	174, 516, 717
CseI	GACGC	2 cut(s)	470, 857
CsiI	ACCWGGT	1 cut(s)	881
Csp6I	GTAC	1 cut(s)	398
CviAII	CATG	3 cut(s)	167, 624, 632
CviQI	GTAC	1 cut(s)	398
DdeI	CTNAG	2 cut(s)	284, 665
EaeI	YGGCCR	1 cut(s)	812
Eam1104I	CTCTTC	3 cut(s)	121, 540, 759
EarI	CTCTTC	3 cut(s)	121, 540, 759
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	659
Eco147I	AGGCCT	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	162
Eco31I	GGTCTC	1 cut(s)	367
Eco47I	GGWCC	1 cut(s)	888
Eco53kI	GAGCTC	1 cut(s)	160
EcoICRI	GAGCTC	1 cut(s)	160
EcoNI	CCTNNNNNAGG	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	881
EcoT14I	CCWWGG	1 cut(s)	659
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	659
FaeI	CATG	3 cut(s)	170, 627, 635
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	3 cut(s)	166, 623, 631
FauI	CCCGC	1 cut(s)	248
FauNDI	CATATG	1 cut(s)	127
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	5 cut(s)	85, 192, 237, 441, 571
FokI	GGATG	1 cut(s)	327
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	5 cut(s)	85, 192, 237, 441, 571
FspBI	CTAG	2 cut(s)	221, 257
GlaI	GCGC	1 cut(s)	501
GluI	GCNGC	5 cut(s)	85, 192, 237, 441, 571
GsuI	CTGGAG	1 cut(s)	347
HaeII	RGCGCY	1 cut(s)	503
HaeIII	GGCC	3 cut(s)	187, 490, 814
HapII	CCGG	3 cut(s)	233, 567, 575
HgaI	GACGC	2 cut(s)	470, 857
HhaI	GCGC	1 cut(s)	502
Hin1I	GRCGYC	2 cut(s)	773, 868
Hin1II	CATG	3 cut(s)	170, 627, 635
Hin6I	GCGC	1 cut(s)	500
HinP1I	GCGC	1 cut(s)	500
HinfI	GANTC	1 cut(s)	793
HpaII	CCGG	3 cut(s)	233, 567, 575
HphI	GGTGA	7 cut(s)	349, 486, 544, 568, 768, 781, 950
Hpy188I	TCNGA	2 cut(s)	285, 474
Hpy188III	TCNNGA	3 cut(s)	167, 370, 872
Hpy99I	CGWCG	3 cut(s)	10, 422, 486
HpyAV	CCTTC	6 cut(s)	221, 237, 285, 553, 581, 817
HpyCH4III	ACNGT	3 cut(s)	103, 348, 532
HpyCH4IV	ACGT	1 cut(s)	773
HpyCH4V	TGCA	4 cut(s)	582, 627, 651, 824
HpyF10VI	GCNNNNNNNGC	4 cut(s)	90, 487, 579, 628
HpyF3I	CTNAG	2 cut(s)	284, 665
HpySE526I	ACGT	1 cut(s)	773
Hsp92I	GRCGYC	2 cut(s)	773, 868
Hsp92II	CATG	3 cut(s)	170, 627, 635
HspAI	GCGC	1 cut(s)	500
Ksp22I	TGATCA	1 cut(s)	337
LmnI	GCTCC	1 cut(s)	155
Lsp1109I	GCAGC	4 cut(s)	178, 223, 427, 557
MabI	ACCWGGT	1 cut(s)	881
MaeI	CTAG	2 cut(s)	221, 257
MaeII	ACGT	1 cut(s)	773
MaeIII	GTNAC	6 cut(s)	9, 140, 538, 769, 774, 845
MboII	GAAGA	6 cut(s)	66, 67, 108, 557, 773, 776
MhlI	GDGCHC	1 cut(s)	162
MlsI	TGGCCA	1 cut(s)	814
MluCI	AATT	4 cut(s)	108, 742, 926, 946
MluNI	TGGCCA	1 cut(s)	814
MmeI	TCCRAC	1 cut(s)	144
Mox20I	TGGCCA	1 cut(s)	814
MscI	TGGCCA	1 cut(s)	814
MseI	TTAA	2 cut(s)	929, 949
MslI	CAYNNNNRTG	1 cut(s)	784
Msp20I	TGGCCA	1 cut(s)	814
MspI	CCGG	3 cut(s)	233, 567, 575
MspR9I	CCNGG	4 cut(s)	233, 567, 575, 883
MvaI	CCWGG	1 cut(s)	883
MwoI	GCNNNNNNNGC	4 cut(s)	90, 487, 579, 628
NciI	CCSGG	3 cut(s)	233, 567, 575
NdeI	CATATG	1 cut(s)	127
NlaIII	CATG	3 cut(s)	170, 627, 635
NlaIV	GGNNCC	5 cut(s)	83, 290, 471, 489, 564
NmuCI	GTSAC	5 cut(s)	9, 140, 538, 769, 774
NspI	RCATGY	1 cut(s)	635
OliI	CACNNNNGTG	1 cut(s)	784
PagI	TCATGA	1 cut(s)	166
PceI	AGGCCT	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	793
PkrI	GCNGC	5 cut(s)	86, 193, 238, 442, 572
PshBI	ATTAAT	1 cut(s)	929
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	881
PspGI	CCWGG	1 cut(s)	881
PspN4I	GGNNCC	5 cut(s)	83, 290, 471, 489, 564
PspPI	GGNCC	2 cut(s)	488, 888
RsaI	GTAC	1 cut(s)	399
RsaNI	GTAC	1 cut(s)	398
RseI	CAYNNNNRTG	1 cut(s)	784
SacI	GAGCTC	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	929, 949
SatI	GCNGC	5 cut(s)	85, 192, 237, 441, 571
Sau96I	GGNCC	2 cut(s)	488, 888
ScrFI	CCNGG	4 cut(s)	233, 567, 575, 883
SduI	GDGCHC	1 cut(s)	162
SexAI	ACCWGGT	1 cut(s)	881
SfcI	CTRYAG	1 cut(s)	918
SinI	GGWCC	1 cut(s)	888
SmiMI	CAYNNNNRTG	1 cut(s)	784
Sse9I	AATT	4 cut(s)	108, 742, 926, 946
SseBI	AGGCCT	1 cut(s)	187
SsiI	CCGC	2 cut(s)	85, 241
SspMI	CTAG	2 cut(s)	221, 257
SstI	GAGCTC	1 cut(s)	162
StuI	AGGCCT	1 cut(s)	187
StyD4I	CCNGG	4 cut(s)	231, 565, 573, 881
StyI	CCWWGG	1 cut(s)	659
TaaI	ACNGT	3 cut(s)	103, 348, 532
TaiI	ACGT	1 cut(s)	776
TasI	AATT	4 cut(s)	108, 742, 926, 946
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	1 cut(s)	793
Tru1I	TTAA	2 cut(s)	929, 949
Tru9I	TTAA	2 cut(s)	929, 949
TscAI	CASTG	1 cut(s)	18
TseFI	GTSAC	5 cut(s)	9, 140, 538, 769, 774
TseI	GCWGC	4 cut(s)	191, 236, 440, 570
Tsp45I	GTSAC	5 cut(s)	9, 140, 538, 769, 774
TspDTI	ATGAA	3 cut(s)	714, 753, 821
TspGWI	ACGGA	2 cut(s)	309, 557
TspRI	CASTG	1 cut(s)	18
VpaK11BI	GGWCC	1 cut(s)	888
VspI	ATTAAT	1 cut(s)	929
XagI	CCTNNNNNAGG	1 cut(s)	419
XceI	RCATGY	1 cut(s)	635
XcmI	CCANNNNNNNNNTGG	2 cut(s)	504, 786
XspI	CTAG	2 cut(s)	221, 257
ZraI	GACGTC	1 cut(s)	774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.