Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002789

Physical Location & Seq

Genomic Coordinates Forward (+)

37761589 .. 37764749

Gene Structure 3161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0342700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCGACCAATATGGTGGTCGAGGATACGAGCTTCGAGGATGATCAGCTGGCCGCGATGACCACCGACGACATTGAAGAATTGCAAAGAACAAACTTGGAGTTGGATTCATACAAGGAAAAGATAAAGGAGAATCAGGAAAAGATTAAGCTCAATAAGCAGTTGCCCTACTTGGTCGGCAACATTGTTGAGATGATGAGTTTGTTGTTATTCAAAAATTACCTGGTTCTGACTGATGAAGCTGAGGAAGATGGGGCAAACATTTATCTTGACTCACAAAGAAAGGGCAAGTGTGTTGTTTTGAAAACATCTACTCATCAGGCCCACAACTGGTTCAGATTTCCTTTGCCTTATCAACTTGATGGCTTACAATGCTTGAATTGCTTAATCAACTTGATGGCTTTAGTAGCAATGACTGGATCAAGGTTGGTGTGCAAGGACATAACTGGGGGTCTAGAGGATATTGCCATTCCAGCTAGCAATTTGGTCGATGATCCGCCTGTTGCTCCTACAAGCAAGTTGATCATGTTCATGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004399 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009532 GO:0009536 GO:0009555 GO:0009570 GO:0009628 GO:0009987 GO:0016053 GO:0016491 GO:0016614 GO:0016616 GO:0018130 GO:0019438 GO:0019752 GO:0032501 GO:0032502 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0048229 GO:0048856 GO:0050896 GO:0052803 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko01100 ko01110 ko01230 map00340 map01100 map01110 map01230

Pfam Domains

Protein Families

Histidinol_dh

Protein Analysis

179

Amino Acids

20.21

Weight (kDa)

4.56

Isoelectric Point (pI)

38.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63890 AT5G63890
fragaria_vesca	FvH4_3g10270 FvH4_3g10270 FvH4_3g10270 FvH4_3g10270 FvH4_3g10270 FvH4_3g10270 FvH4_3g10270
malus_domestica	MD05G1271100.v1.1 MD10G1251700.v1.1
prunus_persica	Prupe.4G091700_v2.0.a1 Prupe.4G091700_v2.0.a1 Prupe.4G091700_v2.0.a1 Prupe.4G091700_v2.0.a1 Prupe.4G091700_v2.0.a1
pyrus_communis	pycom05g25350 pycom10g20760
rosa_chinensis	RchiOBHm_Chr5g0016531 RchiOBHm_Chr7g0241131
rosa_laevigata	RLG00000000593
rosa_multiflora	Rmu_sc0006665.1_g000005 Rmu_sc0008150.1_g000003
rosa_roxburghii	Rroxscaffold_1G00060350 Rroxscaffold_3G00219240
rosa_rugosa	Rorug07G0342600 Rorug07G0342700 Rorug07G0342800 Rorug07G0342900
rosa_samantha	Rh5AG126900 Rh5BG125800 Rh5CG138500 Rh5DG126000 Rh7AG498000 Rh7BG468600 Rh7CG514700 Rh7DG482000
rosa_wichuraiana	Rw5G010990 Rw7G042000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	56
AciI	CCGC	2 cut(s)	54, 497
AclWI	GGATC	2 cut(s)	427, 488
AcoI	YGGCCR	1 cut(s)	51
AfiI	CCNNNNNNNGG	1 cut(s)	330
AgsI	TTSAA	4 cut(s)	77, 214, 304, 379
AjnI	CCWGG	1 cut(s)	222
AluBI	AGCT	5 cut(s)	33, 49, 151, 242, 476
AluI	AGCT	5 cut(s)	33, 49, 151, 242, 476
AlwI	GGATC	2 cut(s)	427, 488
AoxI	GGCC	2 cut(s)	51, 321
AspS9I	GGNCC	1 cut(s)	322
AsuNHI	GCTAGC	1 cut(s)	476
BbvCI	CCTCAGC	1 cut(s)	243
BccI	CCATC	3 cut(s)	245, 356, 391
BcgI	CGANNNNNNTGC	2 cut(s)	469, 503
BciT130I	CCWGG	1 cut(s)	224
BciVI	GTATCC	1 cut(s)	19
BclI	TGATCA	2 cut(s)	43, 522
BfaI	CTAG	2 cut(s)	455, 477
BfuI	GTATCC	1 cut(s)	19
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	322
BmrFI	CCNGG	1 cut(s)	224
BmrI	ACTGGG	1 cut(s)	456
BmtI	GCTAGC	1 cut(s)	480
BmuI	ACTGGG	1 cut(s)	456
Bpu10I	CCTNAGC	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	1 cut(s)	330
Bse1I	ACTGG	3 cut(s)	335, 421, 451
Bse3DI	GCAATG	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	224
BseGI	GGATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	1 cut(s)	330
BseMI	GCAATG	1 cut(s)	417
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	3 cut(s)	335, 421, 451
Bsh1236I	CGCG	1 cut(s)	56
BshFI	GGCC	2 cut(s)	53, 323
BslI	CCNNNNNNNGG	1 cut(s)	330
BsnI	GGCC	2 cut(s)	53, 323
Bsp143I	GATC	4 cut(s)	43, 419, 493, 522
BspACI	CCGC	2 cut(s)	54, 497
BspANI	GGCC	2 cut(s)	53, 323
BspCNI	CTCAG	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	56
BspOI	GCTAGC	1 cut(s)	480
BspPI	GGATC	2 cut(s)	427, 488
BsrDI	GCAATG	1 cut(s)	417
BsrI	ACTGG	3 cut(s)	335, 421, 451
BssMI	GATC	4 cut(s)	43, 419, 493, 522
Bst2UI	CCWGG	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	51, 478
BstDEI	CTNAG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	46
BstFNI	CGCG	1 cut(s)	56
BstKTI	GATC	4 cut(s)	46, 422, 496, 525
BstMBI	GATC	4 cut(s)	43, 419, 493, 522
BstMWI	GCNNNNNNNGC	5 cut(s)	157, 372, 381, 407, 473
BstNI	CCWGG	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	222
BstUI	CGCG	1 cut(s)	56
BstXI	CCANNNNNNTGG	1 cut(s)	16
BsuI	GTATCC	1 cut(s)	19
BsuRI	GGCC	2 cut(s)	53, 323
BtgZI	GCGATG	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	46
Cac8I	GCNNGC	2 cut(s)	51, 478
Cfr13I	GGNCC	1 cut(s)	322
CsiI	ACCWGGT	1 cut(s)	222
CviAII	CATG	2 cut(s)	526, 532
CviJI	RGCY	9 cut(s)	33, 49, 53, 151, 242, 323, 366, 401, 476
CviKI_1	RGCY	9 cut(s)	33, 49, 53, 151, 242, 323, 366, 401, 476
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	4 cut(s)	45, 421, 495, 524
DpnII	GATC	4 cut(s)	43, 419, 493, 522
EaeI	YGGCCR	1 cut(s)	51
EciI	GGCGGA	1 cut(s)	486
EcoRII	CCWGG	1 cut(s)	222
FaeI	CATG	2 cut(s)	529, 535
FaiI	YATR	5 cut(s)	14, 112, 443, 527, 533
FatI	CATG	2 cut(s)	525, 531
FbaI	TGATCA	2 cut(s)	43, 522
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	1 cut(s)	54
FspBI	CTAG	2 cut(s)	455, 477
GluI	GCNGC	1 cut(s)	54
HaeIII	GGCC	2 cut(s)	53, 323
Hin1II	CATG	2 cut(s)	529, 535
HinfI	GANTC	3 cut(s)	107, 133, 272
Hpy188I	TCNGA	2 cut(s)	231, 338
Hpy188III	TCNNGA	3 cut(s)	137, 269, 455
Hpy99I	CGWCG	1 cut(s)	71
HpyCH4V	TGCA	2 cut(s)	85, 435
HpyF10VI	GCNNNNNNNGC	5 cut(s)	157, 372, 381, 407, 473
HpyF3I	CTNAG	1 cut(s)	243
Hsp92II	CATG	2 cut(s)	529, 535
Ksp22I	TGATCA	2 cut(s)	43, 522
Kzo9I	GATC	4 cut(s)	43, 419, 493, 522
LmnI	GCTCC	1 cut(s)	511
MabI	ACCWGGT	1 cut(s)	222
MaeI	CTAG	2 cut(s)	455, 477
MalI	GATC	4 cut(s)	45, 421, 495, 524
MboI	GATC	4 cut(s)	43, 419, 493, 522
MboII	GAAGA	2 cut(s)	89, 260
MluCI	AATT	4 cut(s)	80, 217, 379, 481
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	4 cut(s)	16, 31, 238, 451
MseI	TTAA	2 cut(s)	147, 386
MslI	CAYNNNNRTG	1 cut(s)	530
MspA1I	CMGCKG	1 cut(s)	49
MspR9I	CCNGG	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	224
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	5 cut(s)	157, 372, 381, 407, 473
NdeII	GATC	4 cut(s)	43, 419, 493, 522
NheI	GCTAGC	1 cut(s)	476
NlaIII	CATG	2 cut(s)	529, 535
PfeI	GAWTC	2 cut(s)	107, 133
PkrI	GCNGC	1 cut(s)	55
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspPI	GGNCC	1 cut(s)	322
PvuII	CAGCTG	1 cut(s)	49
RseI	CAYNNNNRTG	1 cut(s)	530
SaqAI	TTAA	2 cut(s)	147, 386
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	4 cut(s)	43, 419, 493, 522
Sau96I	GGNCC	1 cut(s)	322
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	224
SetI	ASST	7 cut(s)	35, 51, 153, 225, 244, 428, 478
SexAI	ACCWGGT	1 cut(s)	222
SmiMI	CAYNNNNRTG	1 cut(s)	530
Sse9I	AATT	4 cut(s)	80, 217, 379, 481
SsiI	CCGC	2 cut(s)	54, 497
SspMI	CTAG	2 cut(s)	455, 477
StyD4I	CCNGG	1 cut(s)	222
TaqI	TCGA	3 cut(s)	21, 36, 489
TasI	AATT	4 cut(s)	80, 217, 379, 481
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	2 cut(s)	107, 133
Tru1I	TTAA	2 cut(s)	147, 386
Tru9I	TTAA	2 cut(s)	147, 386
TspDTI	ATGAA	3 cut(s)	99, 252, 520
XbaI	TCTAGA	1 cut(s)	454
XspI	CTAG	2 cut(s)	455, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.