AT2G17230

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012778
Physical Location & Seq
Reverse (-)
7494536 .. 7496292
1757 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17230.1

Sequence Viewer

Length: 1092 bp
ATGTCGTCTCCGGCGACTACTATCACCTTCTTTTTCTTCTTCACTCTCTCATCCTTCTTCTACATCACTTCTTCACTCCAGAACAACAACAACAACAAACACACAGCAACCGTTAACTCCTTAAATATCCCCTCCGCCGCGGCGGAGATTACGCTAGTAAACCCAAAGCTTCCGCCGCGGAGTCTCTCCCTCACATCCTCCAAAAAATTCGAAGGATCTTCAAATCTAGTCCACCTCCGTTACCACATGGGACCAGTCCTCTCATCTTCTCCGATCAACATCTACGTTATCTGGTACGGACAATGGTCACGCCCACACAAATCCCTAATCAGAGATTTCCTCAATTCTATCTCCGACGCTAAAGCACCTTCTCCCTCCGTCTCCGAATGGTGGCGCACCGCTTCTCTCTACACAGATCAAACCGGATCCAACGTCTCTAGATCCGTTTTAATCGCCGGAGAATACTCCGATTCTAAATACTCCCACGGCCAACACCTTACTCGTCTCACGATTCAGGAAGTCATCGCCTCCGCCGCCAGATCCGCTTCCTTTCCGGTGGATCATAAAAACGGAATGTATCTAGTTCTGACGTCACACGACGTCACGATGCAAGATTTTTGCCGCGCCGTTTGTGGATTTCACTATTTCACTTTCCCGTCGATGGTTGGTTACACTATGCCTTACGCTTGGGTTGGTCAATCGGGAAAACAATGTCCCGAGGTTTGTGCTTATCCATTTGCTTTACCGGGTTACATGGGACACGGTGGTCCCGGAGAGCTCCGGCCACCGAACGGAGAGACTGGAGTAGATGGGATGGTTAGTGTGATTGGTCATGAGTTAGCTGAAGTTGTATCGAATCCGTTGATTAATGCTTGGTACGCCGGAGAAGATCCGACGGCTCCGACGGAGATCGGTGATTTGTGTGAGGGATTGTACGGAAGCGGCGGAGGAGGAGGGTATATTGGTCAAGTTATGAGAGATAGAGAAGGGAAGACTTTTAATATGAATGGTAAAGGAGGAAGAAAGTTTTTAGTTCAATGGATTTGGAACCCTAATTTGAAAGCTTGCTCTGGTCCTAACTCTGTCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phi_1

Protein Analysis

363

Amino Acids

39.64

Weight (kDa)

7.16

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 79 - 358 2.9e-102 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012778)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17230
fragaria_vesca FvH4_2g16740 FvH4_2g16740 FvH4_6g47290
prunus_persica Prupe.8G179300_v2.0.a1
pyrus_communis pycom05g13200 pycom10g11930
rosa_chinensis RchiOBHm_Chr6g0280861
rosa_laevigata RLG00000013025
rosa_multiflora Rmu_sc0023262.1_g000001 Rmu_ssc0000024.1_g000004
rosa_roxburghii Rroxscaffold_7G00187550
rosa_rugosa Rorug06G0135800
rosa_samantha Rh6AG248600 Rh6BG250300 Rh6CG251300 Rh6DG242900
rosa_wichuraiana Rw6G021490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 765
AatII GACGTC 2 cut(s) 593, 603
AccI GTMKAC 1 cut(s) 1086
AccII CGCG 3 cut(s) 140, 178, 624
AclWI GGATC 7 cut(s) 223, 420, 433, 435, 534, 567, 884
AcoI YGGCCR 2 cut(s) 487, 782
AcsI RAATTY 1 cut(s) 206
AcuI CTGAAG 1 cut(s) 864
AcyI GRCGYC 2 cut(s) 590, 600
AfaI GTAC 3 cut(s) 296, 878, 935
AfiI CCNNNNNNNGG 3 cut(s) 390, 661, 791
AgsI TTSAA 3 cut(s) 222, 1037, 1060
AluBI AGCT 4 cut(s) 169, 778, 842, 1064
AluI AGCT 4 cut(s) 169, 778, 842, 1064
Alw21I GWGCWC 1 cut(s) 780
Alw26I GTCTC 6 cut(s) 12, 188, 385, 439, 509, 791
AlwI GGATC 7 cut(s) 223, 420, 433, 435, 534, 567, 884
Ama87I CYCGRG 1 cut(s) 716
AoxI GGCC 2 cut(s) 487, 782
ApoI RAATTY 1 cut(s) 206
AseI ATTAAT 1 cut(s) 867
AspLEI GCGC 2 cut(s) 396, 626
AspS9I GGNCC 3 cut(s) 251, 767, 1073
AsuC2I CCSGG 2 cut(s) 747, 771
AsuHPI GGTGA 2 cut(s) 16, 926
AsuII TTCGAA 1 cut(s) 210
AvaI CYCGRG 1 cut(s) 716
AvaII GGWCC 3 cut(s) 251, 767, 1073
BamHI GGATCC 1 cut(s) 425
BanII GRGCYC 1 cut(s) 780
BbsI GAAGAC 1 cut(s) 998
Bbv12I GWGCWC 1 cut(s) 780
BccI CCATC 3 cut(s) 655, 803, 808
BceAI ACGGC 3 cut(s) 502, 611, 912
BcgI CGANNNNNNTGC 2 cut(s) 707, 741
BcnI CCSGG 2 cut(s) 747, 771
BcoDI GTCTC 6 cut(s) 12, 188, 385, 439, 509, 791
BfaI CTAG 4 cut(s) 155, 227, 438, 581
BisI GCNGC 6 cut(s) 138, 141, 176, 534, 622, 943
BlsI GCNGC 6 cut(s) 139, 142, 177, 535, 623, 944
Bme1390I CCNGG 2 cut(s) 747, 771
Bme18I GGWCC 3 cut(s) 251, 767, 1073
BmeT110I CYCGRG 1 cut(s) 716
BmgT120I GGNCC 3 cut(s) 251, 767, 1073
BmiI GGNNCC 5 cut(s) 252, 427, 769, 900, 1049
BmrFI CCNGG 2 cut(s) 747, 771
BmsI GCATC 1 cut(s) 597
BoxI GACNNNNGTC 1 cut(s) 304
BpiI GAAGAC 1 cut(s) 998
BplI GAGNNNNNCTC 2 cut(s) 324, 356
BpmI CTGGAG 2 cut(s) 62, 822
Bpu14I TTCGAA 1 cut(s) 210
BpuMI CCSGG 2 cut(s) 747, 771
BsaBI GATNNNNATC 1 cut(s) 278
BsaHI GRCGYC 2 cut(s) 590, 600
BsaJI CCNNGG 4 cut(s) 138, 176, 484, 717
BsaWI WCCGGW 2 cut(s) 422, 553
Bsc4I CCNNNNNNNGG 3 cut(s) 390, 661, 791
Bse1I ACTGG 2 cut(s) 254, 805
Bse8I GATNNNNATC 1 cut(s) 278
BseDI CCNNGG 4 cut(s) 138, 176, 484, 717
BseGI GGATG 3 cut(s) 50, 194, 819
BseJI GATNNNNATC 1 cut(s) 278
BseLI CCNNNNNNNGG 3 cut(s) 390, 661, 791
BseNI ACTGG 2 cut(s) 254, 805
BseRI GAGGAG 2 cut(s) 963, 966
Bsh1236I CGCG 3 cut(s) 140, 178, 624
BshFI GGCC 2 cut(s) 489, 784
BsiHKAI GWGCWC 1 cut(s) 780
BsiHKCI CYCGRG 1 cut(s) 716
BsiSI CCGG 8 cut(s) 11, 423, 456, 554, 746, 771, 781, 882
BslFI GGGAC 4 cut(s) 264, 699, 753, 771
BslI CCNNNNNNNGG 3 cut(s) 390, 661, 791
BsmAI GTCTC 6 cut(s) 12, 188, 385, 439, 509, 791
BsmBI CGTCTC 4 cut(s) 12, 385, 439, 509
BsmFI GGGAC 4 cut(s) 264, 699, 753, 771
BsnI GGCC 2 cut(s) 489, 784
BsoBI CYCGRG 1 cut(s) 716
Bsp119I TTCGAA 1 cut(s) 210
Bsp1286I GDGCHC 1 cut(s) 780
Bsp143I GATC 9 cut(s) 215, 273, 415, 425, 440, 539, 559, 889, 909
BspANI GGCC 2 cut(s) 489, 784
BspFNI CGCG 3 cut(s) 140, 178, 624
BspHI TCATGA 1 cut(s) 832
BspLI GGNNCC 5 cut(s) 252, 427, 769, 900, 1049
BspPI GGATC 7 cut(s) 223, 420, 433, 435, 534, 567, 884
BspT104I TTCGAA 1 cut(s) 210
BsrI ACTGG 2 cut(s) 254, 805
BssECI CCNNGG 4 cut(s) 138, 176, 484, 717
BssMI GATC 9 cut(s) 215, 273, 415, 425, 440, 539, 559, 889, 909
BssNI GRCGYC 2 cut(s) 590, 600
Bst4CI ACNGT 2 cut(s) 112, 764
BstACI GRCGYC 2 cut(s) 590, 600
BstBI TTCGAA 1 cut(s) 210
BstC8I GCNNGC 1 cut(s) 1066
BstDSI CCRYGG 3 cut(s) 138, 176, 484
BstF5I GGATG 3 cut(s) 50, 194, 819
BstFNI CGCG 3 cut(s) 140, 178, 624
BstHHI GCGC 2 cut(s) 396, 626
BstKTI GATC 9 cut(s) 218, 276, 418, 428, 443, 542, 562, 892, 912
BstMAI GTCTC 6 cut(s) 12, 188, 385, 439, 509, 791
BstMBI GATC 9 cut(s) 215, 273, 415, 425, 440, 539, 559, 889, 909
BstMWI GCNNNNNNNGC 4 cut(s) 175, 533, 542, 878
BstPAI GACNNNNGTC 1 cut(s) 304
BstSCI CCNGG 2 cut(s) 745, 769
BstUI CGCG 3 cut(s) 140, 178, 624
BstV2I GAAGAC 1 cut(s) 998
BstX2I RGATCY 5 cut(s) 215, 425, 440, 539, 889
BstYI RGATCY 5 cut(s) 215, 425, 440, 539, 889
BsuRI GGCC 2 cut(s) 489, 784
BtgI CCRYGG 3 cut(s) 138, 176, 484
BtgZI GCGATG 1 cut(s) 508
BtsCI GGATG 3 cut(s) 50, 194, 819
Cac8I GCNNGC 1 cut(s) 1066
CciI TCATGA 1 cut(s) 832
CfoI GCGC 2 cut(s) 396, 626
Cfr13I GGNCC 3 cut(s) 251, 767, 1073
Cfr42I CCGCGG 2 cut(s) 141, 179
CseI GACGC 1 cut(s) 365
Csp6I GTAC 3 cut(s) 295, 877, 934
CviAII CATG 3 cut(s) 247, 754, 833
CviJI RGCY 7 cut(s) 169, 489, 778, 784, 842, 899, 1064
CviKI_1 RGCY 7 cut(s) 169, 489, 778, 784, 842, 899, 1064
CviQI GTAC 3 cut(s) 295, 877, 934
DpnI GATC 9 cut(s) 217, 275, 417, 427, 442, 541, 561, 891, 911
DpnII GATC 9 cut(s) 215, 273, 415, 425, 440, 539, 559, 889, 909
DrdI GACNNNNNNGTC 1 cut(s) 765
DseDI GACNNNNNNGTC 1 cut(s) 765
EaeI YGGCCR 2 cut(s) 487, 782
EciI GGCGGA 5 cut(s) 124, 158, 162, 520, 960
Ecl136II GAGCTC 1 cut(s) 778
Eco24I GRGCYC 1 cut(s) 780
Eco47I GGWCC 3 cut(s) 251, 767, 1073
Eco53kI GAGCTC 1 cut(s) 778
Eco57I CTGAAG 1 cut(s) 864
Eco88I CYCGRG 1 cut(s) 716
EcoICRI GAGCTC 1 cut(s) 778
EcoT38I GRGCYC 1 cut(s) 780
Esp3I CGTCTC 4 cut(s) 12, 385, 439, 509
FaeI CATG 3 cut(s) 250, 757, 836
FaiI YATR 8 cut(s) 248, 564, 677, 755, 834, 960, 974, 1004
FaqI GGGAC 4 cut(s) 264, 699, 753, 771
FatI CATG 3 cut(s) 246, 753, 832
FblI GTMKAC 1 cut(s) 1086
Fnu4HI GCNGC 6 cut(s) 138, 141, 176, 534, 622, 943
FokI GGATG 3 cut(s) 37, 181, 826
FriOI GRGCYC 1 cut(s) 780
Fsp4HI GCNGC 6 cut(s) 138, 141, 176, 534, 622, 943
FspBI CTAG 4 cut(s) 155, 227, 438, 581
GlaI GCGC 2 cut(s) 395, 625
GluI GCNGC 6 cut(s) 138, 141, 176, 534, 622, 943
GsuI CTGGAG 2 cut(s) 62, 822
HaeIII GGCC 2 cut(s) 489, 784
HapII CCGG 8 cut(s) 11, 423, 456, 554, 746, 771, 781, 882
HgaI GACGC 1 cut(s) 365
HhaI GCGC 2 cut(s) 396, 626
Hin1I GRCGYC 2 cut(s) 590, 600
Hin1II CATG 3 cut(s) 250, 757, 836
Hin6I GCGC 2 cut(s) 394, 624
HinP1I GCGC 2 cut(s) 394, 624
HincII GTYRAC 2 cut(s) 115, 1087
HindII GTYRAC 2 cut(s) 115, 1087
HindIII AAGCTT 2 cut(s) 167, 1062
HinfI GANTC 4 cut(s) 181, 470, 511, 856
HpaI GTTAAC 1 cut(s) 115
HpaII CCGG 8 cut(s) 11, 423, 456, 554, 746, 771, 781, 882
HphI GGTGA 2 cut(s) 16, 926
Hpy166II GTNNAC 4 cut(s) 115, 160, 232, 1087
Hpy188I TCNGA 8 cut(s) 273, 332, 355, 385, 469, 588, 894, 903
Hpy188III TCNNGA 8 cut(s) 79, 438, 508, 515, 604, 702, 716, 833
Hpy8I GTNNAC 4 cut(s) 115, 160, 232, 1087
Hpy99I CGWCG 5 cut(s) 359, 602, 661, 898, 907
HpyAV CCTTC 5 cut(s) 37, 64, 206, 378, 980
HpyCH4III ACNGT 2 cut(s) 112, 764
HpyCH4IV ACGT 4 cut(s) 285, 432, 590, 600
HpyCH4V TGCA 1 cut(s) 610
HpyF10VI GCNNNNNNNGC 4 cut(s) 175, 533, 542, 878
HpySE526I ACGT 4 cut(s) 285, 432, 590, 600
Hsp92I GRCGYC 2 cut(s) 590, 600
Hsp92II CATG 3 cut(s) 250, 757, 836
HspAI GCGC 2 cut(s) 394, 624
KspAI GTTAAC 1 cut(s) 115
KspI CCGCGG 2 cut(s) 141, 179
Kzo9I GATC 9 cut(s) 215, 273, 415, 425, 440, 539, 559, 889, 909
LmnI GCTCC 2 cut(s) 783, 904
LweI GCATC 1 cut(s) 597
MaeI CTAG 4 cut(s) 155, 227, 438, 581
MaeII ACGT 4 cut(s) 285, 432, 590, 600
MaeIII GTNAC 6 cut(s) 239, 306, 591, 601, 668, 749
MalI GATC 9 cut(s) 217, 275, 417, 427, 442, 541, 561, 891, 911
MboI GATC 9 cut(s) 215, 273, 415, 425, 440, 539, 559, 889, 909
MboII GAAGA 9 cut(s) 28, 31, 49, 63, 210, 258, 899, 1003, 1032
MflI RGATCY 5 cut(s) 215, 425, 440, 539, 889
MhlI GDGCHC 1 cut(s) 780
MluCI AATT 3 cut(s) 206, 343, 1054
MlyI GAGTC 1 cut(s) 190
MmeI TCCRAC 4 cut(s) 378, 453, 917, 926
MseI TTAA 5 cut(s) 114, 122, 449, 867, 999
MspA1I CMGCKG 2 cut(s) 140, 178
MspI CCGG 8 cut(s) 11, 423, 456, 554, 746, 771, 781, 882
MspR9I CCNGG 2 cut(s) 747, 771
MvnI CGCG 3 cut(s) 140, 178, 624
MwoI GCNNNNNNNGC 4 cut(s) 175, 533, 542, 878
NciI CCSGG 2 cut(s) 747, 771
NdeII GATC 9 cut(s) 215, 273, 415, 425, 440, 539, 559, 889, 909
NlaIII CATG 3 cut(s) 250, 757, 836
NlaIV GGNNCC 5 cut(s) 252, 427, 769, 900, 1049
NmuCI GTSAC 3 cut(s) 306, 591, 601
NspV TTCGAA 1 cut(s) 210
PagI TCATGA 1 cut(s) 832
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PfeI GAWTC 3 cut(s) 470, 511, 856
PfoI TCCNGGA 1 cut(s) 769
PkrI GCNGC 6 cut(s) 139, 142, 177, 535, 623, 944
PleI GAGTC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 189
PshAI GACNNNNGTC 1 cut(s) 304
PshBI ATTAAT 1 cut(s) 867
Psp124BI GAGCTC 1 cut(s) 780
PspN4I GGNNCC 5 cut(s) 252, 427, 769, 900, 1049
PspPI GGNCC 3 cut(s) 251, 767, 1073
PsuI RGATCY 5 cut(s) 215, 425, 440, 539, 889
RsaI GTAC 3 cut(s) 296, 878, 935
RsaNI GTAC 3 cut(s) 295, 877, 934
SacI GAGCTC 1 cut(s) 780
SacII CCGCGG 2 cut(s) 141, 179
SalI GTCGAC 1 cut(s) 1085
SaqAI TTAA 5 cut(s) 114, 122, 449, 867, 999
SatI GCNGC 6 cut(s) 138, 141, 176, 534, 622, 943
Sau3AI GATC 9 cut(s) 215, 273, 415, 425, 440, 539, 559, 889, 909
Sau96I GGNCC 3 cut(s) 251, 767, 1073
SchI GAGTC 1 cut(s) 190
ScrFI CCNGG 2 cut(s) 747, 771
SduI GDGCHC 1 cut(s) 780
SfaNI GCATC 1 cut(s) 597
Sfr303I CCGCGG 2 cut(s) 141, 179
SfuI TTCGAA 1 cut(s) 210
SgrBI CCGCGG 2 cut(s) 141, 179
SinI GGWCC 3 cut(s) 251, 767, 1073
Sse9I AATT 3 cut(s) 206, 343, 1054
SspMI CTAG 4 cut(s) 155, 227, 438, 581
SstI GAGCTC 1 cut(s) 780
StyD4I CCNGG 2 cut(s) 745, 769
TaaI ACNGT 2 cut(s) 112, 764
TaiI ACGT 4 cut(s) 288, 435, 593, 603
TaqI TCGA 4 cut(s) 210, 659, 854, 1086
TasI AATT 3 cut(s) 206, 343, 1054
TauI GCSGC 6 cut(s) 140, 143, 178, 536, 624, 945
TfiI GAWTC 3 cut(s) 470, 511, 856
Tru1I TTAA 5 cut(s) 114, 122, 449, 867, 999
Tru9I TTAA 5 cut(s) 114, 122, 449, 867, 999
TseFI GTSAC 3 cut(s) 306, 591, 601
Tsp45I GTSAC 3 cut(s) 306, 591, 601
TspDTI ATGAA 1 cut(s) 1019
TspGWI ACGGA 9 cut(s) 227, 312, 367, 433, 585, 807, 849, 920, 951
VpaK11BI GGWCC 3 cut(s) 251, 767, 1073
VspI ATTAAT 1 cut(s) 867
XapI RAATTY 1 cut(s) 206
XbaI TCTAGA 1 cut(s) 437
XmiI GTMKAC 1 cut(s) 1086
XspI CTAG 4 cut(s) 155, 227, 438, 581
ZraI GACGTC 2 cut(s) 591, 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.