FvH4_2g16740

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012778
Physical Location & Seq
Reverse (-)
14584586 .. 14586540
1955 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16740.t1

Sequence Viewer

Length: 1059 bp
ATGTCGTCCTCCCTCTCCCTCCTCCTCCTCCTCCTCCTCCTCCCCTTCTTCCTCCTCCTCTCTTCCATTGCCGCCGCACCCTCTTCCGTTCAGACCCTCCACACCAAACCCACCACCCTCTTCAACCCCAAGCTCCCCCCACGCAGCCTCTCCTCCTCCAAGAAGTTCGAAGGCTCCTCAGATCTAGTCCACCTCCGCTACCACATGGGCCCCGTCCTCTCCTCCCACCCCATCAACATCTACCTCATCTGGTACGGCCGTTGGTCCCTCCCCCAGAAGCTCCTCATCAAGGACTTCCTCCTCTCCATCTCCACCTCCGACCTCCGCGCTGCCCCCTCCCCCTCCGTCGCCGAGTGGTGGCGCACTGTCTCCCTCTACACCGACCAGACCGGCGCCAATGTCTCACGCTCCGTTGTCGTCGCCGGGGAACACGCTGACGTTAAATACTCCCAAGGCAAGGCCCTCACGCGCCTCTCCGTGCAACAGGTGATAGGTAACGCCGTCAGATTTGCGCCGTTTCCGGCCGACCACAAGCACGGGATCTACCTCGTCCTCACCTCCGACGACGTCACCATGCAGGACTTCTGCCGCGCCGTCTGCGGCTTCCATTATTTCACATTCCCTTCCATGGTGGGTTATACTCTCCCCTACGCTTGGATCGGCAACTCCGCCAAGCAGTGCCCGGAGGTCTGCGCCTACCCGTTTGCGCTTCCGGCCTACATGGGCGGAGGAGGCCCCGGAGCTCTGTCGCCGCCGAATAAAGATATTGGCGTCGACGGGATGATCAGTGTCATCGGGCACGAGCTGGCCGAGCTTTCGTCGAATCCTCTTGTGAATGCTTGGTACGCCGGGGAGGACCCGACGGCGCCGACGGAGATCGGGGACTTGTGCGAGGGGCTGTACGGGACGGGAGGCGGAGGAGGGTACATTGGGCAGGTGATGAAGGATAGAGAAGGGAGGACGTTCAATGTGAATGGGAGGAAAGGGAGGAAGTTCTTGCTGCAGTGGATTTGGAGCCCTGAGCTCAAGGCCTGTGCTGGGCCTAATGCTTTGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phi_1

Protein Analysis

353

Amino Acids

38.2

Weight (kDa)

8.14

Isoelectric Point (pI)

46.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 65 - 347 2e-101 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012778)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17230
fragaria_vesca FvH4_2g16740 FvH4_2g16740 FvH4_6g47290
prunus_persica Prupe.8G179300_v2.0.a1
pyrus_communis pycom05g13200 pycom10g11930
rosa_chinensis RchiOBHm_Chr6g0280861
rosa_laevigata RLG00000013025
rosa_multiflora Rmu_sc0023262.1_g000001 Rmu_ssc0000024.1_g000004
rosa_roxburghii Rroxscaffold_7G00187550
rosa_rugosa Rorug06G0135800
rosa_samantha Rh6AG248600 Rh6BG250300 Rh6CG251300 Rh6DG242900
rosa_wichuraiana Rw6G021490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 925
AatII GACGTC 1 cut(s) 570
Acc36I ACCTGC 1 cut(s) 925
AccB1I GGYRCC 2 cut(s) 392, 865
AccI GTMKAC 1 cut(s) 774
AccII CGCG 3 cut(s) 327, 469, 591
AclWI GGATC 2 cut(s) 548, 665
AcoI YGGCCR 3 cut(s) 256, 522, 807
AcyI GRCGYC 4 cut(s) 393, 567, 771, 866
AfaI GTAC 4 cut(s) 254, 845, 902, 926
AfiI CCNNNNNNNGG 6 cut(s) 289, 357, 457, 628, 654, 1038
AgsI TTSAA 2 cut(s) 124, 967
AluBI AGCT 6 cut(s) 133, 280, 743, 805, 814, 1024
AluI AGCT 6 cut(s) 133, 280, 743, 805, 814, 1024
Alw21I GWGCWC 2 cut(s) 745, 1026
Alw26I GTCTC 2 cut(s) 373, 406
AlwI GGATC 2 cut(s) 548, 665
AoxI GGCC 9 cut(s) 208, 256, 459, 522, 714, 733, 807, 1029, 1040
ApaI GGGCCC 1 cut(s) 212
ApeKI GCWGC 3 cut(s) 144, 329, 1000
AspLEI GCGC 9 cut(s) 329, 363, 395, 471, 514, 593, 695, 709, 868
AspS9I GGNCC 7 cut(s) 208, 209, 264, 460, 734, 856, 1040
AsuC2I CCSGG 4 cut(s) 424, 683, 738, 850
AsuHPI GGTGA 4 cut(s) 499, 547, 562, 949
AsuII TTCGAA 1 cut(s) 168
AvaII GGWCC 2 cut(s) 264, 856
BaeGI GKGCMC 3 cut(s) 212, 683, 801
BaeI ACNNNNGTAYC 2 cut(s) 244, 277
BanI GGYRCC 2 cut(s) 392, 865
BanII GRGCYC 4 cut(s) 212, 745, 1019, 1026
BauI CACGAG 1 cut(s) 800
Bbv12I GWGCWC 2 cut(s) 745, 1026
BbvI GCAGC 3 cut(s) 156, 316, 987
BccI CCATC 2 cut(s) 239, 314
BceAI ACGGC 6 cut(s) 243, 271, 485, 499, 578, 879
BclI TGATCA 1 cut(s) 783
BcnI CCSGG 4 cut(s) 424, 683, 738, 850
BcoDI GTCTC 2 cut(s) 373, 406
BfaI CTAG 1 cut(s) 185
BfmI CTRYAG 1 cut(s) 1001
BfoI RGCGCY 2 cut(s) 396, 869
BfuAI ACCTGC 1 cut(s) 925
BglII AGATCT 1 cut(s) 181
BisI GCNGC 8 cut(s) 72, 75, 145, 330, 589, 601, 752, 1001
BlsI GCNGC 8 cut(s) 73, 76, 146, 331, 590, 602, 753, 1002
Bme1390I CCNGG 4 cut(s) 424, 683, 738, 850
Bme18I GGWCC 2 cut(s) 264, 856
BmgT120I GGNCC 7 cut(s) 208, 209, 264, 460, 734, 856, 1040
BmiI GGNNCC 9 cut(s) 175, 210, 211, 266, 394, 736, 858, 867, 1016
BmrFI CCNGG 4 cut(s) 424, 683, 738, 850
Bpu10I CCTNAGC 1 cut(s) 1020
Bpu14I TTCGAA 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 1010
BpuMI CCSGG 4 cut(s) 424, 683, 738, 850
BsaHI GRCGYC 4 cut(s) 393, 567, 771, 866
BsaJI CCNNGG 5 cut(s) 423, 451, 627, 736, 849
Bsc4I CCNNNNNNNGG 6 cut(s) 289, 357, 457, 628, 654, 1038
Bse118I RCCGGY 1 cut(s) 389
Bse3DI GCAATG 1 cut(s) 66
BseDI CCNNGG 5 cut(s) 423, 451, 627, 736, 849
BseGI GGATG 1 cut(s) 786
BseLI CCNNNNNNNGG 6 cut(s) 289, 357, 457, 628, 654, 1038
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 2 cut(s) 192, 1011
BseSI GKGCMC 3 cut(s) 212, 683, 801
BseX3I CGGCCG 2 cut(s) 256, 522
BseXI GCAGC 3 cut(s) 156, 316, 987
BseYI CCCAGC 1 cut(s) 1037
Bsh1236I CGCG 3 cut(s) 327, 469, 591
Bsh1285I CGRYCG 2 cut(s) 259, 525
BshFI GGCC 9 cut(s) 210, 258, 461, 524, 716, 735, 809, 1031, 1042
BshNI GGYRCC 2 cut(s) 392, 865
BsiEI CGRYCG 2 cut(s) 259, 525
BsiHKAI GWGCWC 2 cut(s) 745, 1026
BsiSI CCGG 7 cut(s) 390, 423, 521, 683, 713, 738, 849
BslFI GGGAC 3 cut(s) 250, 896, 919
BslI CCNNNNNNNGG 6 cut(s) 289, 357, 457, 628, 654, 1038
BsmAI GTCTC 2 cut(s) 373, 406
BsmFI GGGAC 3 cut(s) 250, 896, 919
BsmI GAATGC 1 cut(s) 841
BsnI GGCC 9 cut(s) 210, 258, 461, 524, 716, 735, 809, 1031, 1042
Bsp119I TTCGAA 1 cut(s) 168
Bsp120I GGGCCC 1 cut(s) 208
Bsp1286I GDGCHC 6 cut(s) 212, 683, 745, 801, 1019, 1026
Bsp143I GATC 5 cut(s) 181, 540, 657, 783, 876
Bsp19I CCATGG 1 cut(s) 627
BspANI GGCC 9 cut(s) 210, 258, 461, 524, 716, 735, 809, 1031, 1042
BspCNI CTCAG 2 cut(s) 191, 1012
BspFNI CGCG 3 cut(s) 327, 469, 591
BspLI GGNNCC 9 cut(s) 175, 210, 211, 266, 394, 736, 858, 867, 1016
BspMAI CTGCAG 1 cut(s) 1005
BspMI ACCTGC 1 cut(s) 925
BspPI GGATC 2 cut(s) 548, 665
BspT104I TTCGAA 1 cut(s) 168
BspT107I GGYRCC 2 cut(s) 392, 865
BsrDI GCAATG 1 cut(s) 66
BsrFI RCCGGY 1 cut(s) 389
BssAI RCCGGY 1 cut(s) 389
BssECI CCNNGG 5 cut(s) 423, 451, 627, 736, 849
BssMI GATC 5 cut(s) 181, 540, 657, 783, 876
BssNI GRCGYC 4 cut(s) 393, 567, 771, 866
BssSI CACGAG 1 cut(s) 800
BssT1I CCWWGG 2 cut(s) 451, 627
Bst2BI CACGAG 1 cut(s) 800
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 3 cut(s) 67, 88, 125
BstACI GRCGYC 4 cut(s) 393, 567, 771, 866
BstBI TTCGAA 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 807
BstDEI CTNAG 2 cut(s) 178, 1020
BstDSI CCRYGG 1 cut(s) 627
BstENI CCTNNNNNAGG 1 cut(s) 287
BstF5I GGATG 1 cut(s) 786
BstFNI CGCG 3 cut(s) 327, 469, 591
BstH2I RGCGCY 2 cut(s) 396, 869
BstHHI GCGC 9 cut(s) 329, 363, 395, 471, 514, 593, 695, 709, 868
BstKTI GATC 5 cut(s) 184, 543, 660, 786, 879
BstMAI GTCTC 2 cut(s) 373, 406
BstMBI GATC 5 cut(s) 181, 540, 657, 783, 876
BstMCI CGRYCG 2 cut(s) 259, 525
BstMWI GCNNNNNNNGC 5 cut(s) 597, 713, 732, 811, 845
BstSCI CCNGG 4 cut(s) 422, 681, 736, 848
BstSFI CTRYAG 1 cut(s) 1001
BstSLI GKGCMC 3 cut(s) 212, 683, 801
BstUI CGCG 3 cut(s) 327, 469, 591
BstV1I GCAGC 3 cut(s) 156, 316, 987
BstX2I RGATCY 2 cut(s) 181, 540
BstYI RGATCY 2 cut(s) 181, 540
BstZI CGGCCG 2 cut(s) 256, 522
BsuRI GGCC 9 cut(s) 210, 258, 461, 524, 716, 735, 809, 1031, 1042
BtgI CCRYGG 1 cut(s) 627
BtsCI GGATG 1 cut(s) 786
BtsI GCAGTG 2 cut(s) 683, 1010
BtsIMutI CAGTG 4 cut(s) 363, 683, 793, 1010
BveI ACCTGC 1 cut(s) 925
Cac8I GCNNGC 1 cut(s) 807
CfoI GCGC 9 cut(s) 329, 363, 395, 471, 514, 593, 695, 709, 868
Cfr10I RCCGGY 1 cut(s) 389
Cfr13I GGNCC 7 cut(s) 208, 209, 264, 460, 734, 856, 1040
CseI GACGC 1 cut(s) 760
Csp6I GTAC 4 cut(s) 253, 844, 901, 925
CviAII CATG 4 cut(s) 205, 574, 628, 721
CviQI GTAC 4 cut(s) 253, 844, 901, 925
DdeI CTNAG 2 cut(s) 178, 1020
DinI GGCGCC 2 cut(s) 394, 867
DpnI GATC 5 cut(s) 183, 542, 659, 785, 878
DpnII GATC 5 cut(s) 181, 540, 657, 783, 876
EaeI YGGCCR 3 cut(s) 256, 522, 807
EagI CGGCCG 2 cut(s) 256, 522
Eam1104I CTCTTC 3 cut(s) 67, 88, 125
EarI CTCTTC 3 cut(s) 67, 88, 125
EciI GGCGGA 3 cut(s) 658, 741, 930
Ecl136II GAGCTC 2 cut(s) 743, 1024
EclXI CGGCCG 2 cut(s) 256, 522
Eco130I CCWWGG 2 cut(s) 451, 627
Eco147I AGGCCT 1 cut(s) 1031
Eco24I GRGCYC 4 cut(s) 212, 745, 1019, 1026
Eco47I GGWCC 2 cut(s) 264, 856
Eco52I CGGCCG 2 cut(s) 256, 522
Eco53kI GAGCTC 2 cut(s) 743, 1024
EcoICRI GAGCTC 2 cut(s) 743, 1024
EcoNI CCTNNNNNAGG 1 cut(s) 287
EcoO109I RGGNCCY 4 cut(s) 209, 460, 734, 856
EcoT14I CCWWGG 2 cut(s) 451, 627
EcoT38I GRGCYC 4 cut(s) 212, 745, 1019, 1026
EgeI GGCGCC 2 cut(s) 394, 867
EheI GGCGCC 2 cut(s) 394, 867
ErhI CCWWGG 2 cut(s) 451, 627
FaeI CATG 4 cut(s) 208, 577, 631, 724
FaiI YATR 5 cut(s) 206, 575, 629, 639, 722
FaqI GGGAC 3 cut(s) 250, 896, 919
FatI CATG 4 cut(s) 204, 573, 627, 720
FbaI TGATCA 1 cut(s) 783
FblI GTMKAC 1 cut(s) 774
Fnu4HI GCNGC 8 cut(s) 72, 75, 145, 330, 589, 601, 752, 1001
FokI GGATG 1 cut(s) 793
FriOI GRGCYC 4 cut(s) 212, 745, 1019, 1026
Fsp4HI GCNGC 8 cut(s) 72, 75, 145, 330, 589, 601, 752, 1001
FspBI CTAG 1 cut(s) 185
GlaI GCGC 9 cut(s) 328, 362, 394, 470, 513, 592, 694, 708, 867
GluI GCNGC 8 cut(s) 72, 75, 145, 330, 589, 601, 752, 1001
GsaI CCCAGC 1 cut(s) 1041
HaeII RGCGCY 2 cut(s) 396, 869
HaeIII GGCC 9 cut(s) 210, 258, 461, 524, 716, 735, 809, 1031, 1042
HapII CCGG 7 cut(s) 390, 423, 521, 683, 713, 738, 849
HgaI GACGC 1 cut(s) 760
HhaI GCGC 9 cut(s) 329, 363, 395, 471, 514, 593, 695, 709, 868
Hin1I GRCGYC 4 cut(s) 393, 567, 771, 866
Hin1II CATG 4 cut(s) 208, 577, 631, 724
Hin6I GCGC 9 cut(s) 327, 361, 393, 469, 512, 591, 693, 707, 866
HinP1I GCGC 9 cut(s) 327, 361, 393, 469, 512, 591, 693, 707, 866
HincII GTYRAC 1 cut(s) 775
HindII GTYRAC 1 cut(s) 775
HinfI GANTC 1 cut(s) 823
HpaII CCGG 7 cut(s) 390, 423, 521, 683, 713, 738, 849
HphI GGTGA 4 cut(s) 499, 547, 562, 949
Hpy166II GTNNAC 2 cut(s) 190, 775
Hpy188I TCNGA 5 cut(s) 93, 181, 319, 506, 562
Hpy8I GTNNAC 2 cut(s) 190, 775
Hpy99I CGWCG 9 cut(s) 350, 422, 566, 569, 776, 779, 823, 865, 874
HpyAV CCTTC 5 cut(s) 55, 164, 633, 937, 947
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4IV ACGT 3 cut(s) 438, 567, 962
HpyCH4V TGCA 3 cut(s) 481, 577, 1003
HpyF10VI GCNNNNNNNGC 5 cut(s) 597, 713, 732, 811, 845
HpyF3I CTNAG 2 cut(s) 178, 1020
HpySE526I ACGT 3 cut(s) 438, 567, 962
Hsp92I GRCGYC 4 cut(s) 393, 567, 771, 866
Hsp92II CATG 4 cut(s) 208, 577, 631, 724
HspAI GCGC 9 cut(s) 327, 361, 393, 469, 512, 591, 693, 707, 866
KasI GGCGCC 2 cut(s) 392, 865
Ksp22I TGATCA 1 cut(s) 783
Kzo9I GATC 5 cut(s) 181, 540, 657, 783, 876
LmnI GCTCC 6 cut(s) 138, 179, 285, 413, 740, 1014
Lsp1109I GCAGC 3 cut(s) 156, 316, 987
MaeI CTAG 1 cut(s) 185
MaeII ACGT 3 cut(s) 438, 567, 962
MaeIII GTNAC 2 cut(s) 494, 568
MalI GATC 5 cut(s) 183, 542, 659, 785, 878
MboI GATC 5 cut(s) 181, 540, 657, 783, 876
MboII GAAGA 4 cut(s) 40, 54, 75, 112
MflI RGATCY 2 cut(s) 181, 540
MhlI GDGCHC 6 cut(s) 212, 683, 745, 801, 1019, 1026
Mly113I GGCGCC 2 cut(s) 393, 866
MmeI TCCRAC 2 cut(s) 342, 585
MseI TTAA 1 cut(s) 441
MspI CCGG 7 cut(s) 390, 423, 521, 683, 713, 738, 849
MspR9I CCNGG 4 cut(s) 424, 683, 738, 850
Mva1269I GAATGC 1 cut(s) 841
MvnI CGCG 3 cut(s) 327, 469, 591
MwoI GCNNNNNNNGC 5 cut(s) 597, 713, 732, 811, 845
NarI GGCGCC 2 cut(s) 393, 866
NciI CCSGG 4 cut(s) 424, 683, 738, 850
NcoI CCATGG 1 cut(s) 627
NdeII GATC 5 cut(s) 181, 540, 657, 783, 876
NlaIII CATG 4 cut(s) 208, 577, 631, 724
NlaIV GGNNCC 9 cut(s) 175, 210, 211, 266, 394, 736, 858, 867, 1016
NmeAIII GCCGAG 2 cut(s) 376, 835
NmuCI GTSAC 1 cut(s) 568
NspV TTCGAA 1 cut(s) 168
PaqCI CACCTGC 1 cut(s) 925
PceI AGGCCT 1 cut(s) 1031
PcsI WCGNNNNNNNCGW 1 cut(s) 807
PctI GAATGC 1 cut(s) 841
PfeI GAWTC 1 cut(s) 823
PflFI GACNNNGTC 1 cut(s) 566
PkrI GCNGC 8 cut(s) 73, 76, 146, 331, 590, 602, 753, 1002
PluTI GGCGCC 2 cut(s) 396, 869
PpuMI RGGWCCY 1 cut(s) 856
Psp124BI GAGCTC 2 cut(s) 745, 1026
Psp5II RGGWCCY 1 cut(s) 856
PspFI CCCAGC 1 cut(s) 1037
PspN4I GGNNCC 9 cut(s) 175, 210, 211, 266, 394, 736, 858, 867, 1016
PspOMI GGGCCC 1 cut(s) 208
PspPI GGNCC 7 cut(s) 208, 209, 264, 460, 734, 856, 1040
PspPPI RGGWCCY 1 cut(s) 856
PstI CTGCAG 1 cut(s) 1005
PsuI RGATCY 2 cut(s) 181, 540
PsyI GACNNNGTC 1 cut(s) 566
RsaI GTAC 4 cut(s) 254, 845, 902, 926
RsaNI GTAC 4 cut(s) 253, 844, 901, 925
SacI GAGCTC 2 cut(s) 745, 1026
SalI GTCGAC 1 cut(s) 773
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 8 cut(s) 72, 75, 145, 330, 589, 601, 752, 1001
Sau3AI GATC 5 cut(s) 181, 540, 657, 783, 876
Sau96I GGNCC 7 cut(s) 208, 209, 264, 460, 734, 856, 1040
ScrFI CCNGG 4 cut(s) 424, 683, 738, 850
SduI GDGCHC 6 cut(s) 212, 683, 745, 801, 1019, 1026
SfcI CTRYAG 1 cut(s) 1001
SfoI GGCGCC 2 cut(s) 394, 867
SfuI TTCGAA 1 cut(s) 168
SgrDI CGTCGACG 1 cut(s) 773
SinI GGWCC 2 cut(s) 264, 856
SmlI CTYRAG 1 cut(s) 1025
SmoI CTYRAG 1 cut(s) 1025
SseBI AGGCCT 1 cut(s) 1031
SspDI GGCGCC 2 cut(s) 392, 865
SspMI CTAG 1 cut(s) 185
SstI GAGCTC 2 cut(s) 745, 1026
StuI AGGCCT 1 cut(s) 1031
StyD4I CCNGG 4 cut(s) 422, 681, 736, 848
StyI CCWWGG 2 cut(s) 451, 627
TaaI ACNGT 1 cut(s) 367
TaiI ACGT 3 cut(s) 441, 570, 965
TaqI TCGA 3 cut(s) 168, 774, 821
TauI GCSGC 5 cut(s) 74, 77, 591, 603, 754
TfiI GAWTC 1 cut(s) 823
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 4 cut(s) 370, 683, 793, 1010
TseFI GTSAC 1 cut(s) 568
TseI GCWGC 3 cut(s) 144, 329, 1000
Tsp45I GTSAC 1 cut(s) 568
TspDTI ATGAA 1 cut(s) 956
TspGWI ACGGA 5 cut(s) 76, 334, 400, 466, 887
TspRI CASTG 4 cut(s) 370, 683, 793, 1010
Tth111I GACNNNGTC 1 cut(s) 566
VpaK11BI GGWCC 2 cut(s) 264, 856
XagI CCTNNNNNAGG 1 cut(s) 287
XmiI GTMKAC 1 cut(s) 774
XspI CTAG 1 cut(s) 185
ZraI GACGTC 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.