Rh6DG242900

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0012778
Physical Location & Seq
Reverse (-)
43009645 .. 43010499
855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG242900.1

Sequence Viewer

Length: 855 bp
ATGGGTCCCGTCCTCTCCTCCACCCCTATTAACATCTACCTCATCTGGTACGGCCGTTGGGCCTTACCCCAGAAGCTCCTCATCAAGGACTTCCTCCACTCCATCTCCACCACCGACCTCCGCGCCGCTCCGTCGCCCTCCGTCGCCGAGTGGTGGCGCACTGTCTCGCTCTACACCGACCAGACCGGCGCCAACGTCTCCCGCTCCGTCGTCGTGGCGGGGGAGCACGCTGACCTCAAGTACTCCCACGGCAAGCAACTCACCCGCCTCTCCGTCCAGCAGGTCATCGCCAACGCCGTCAGATCTGCTCCGTTCCCGGTCGACCACAAGAACGGGATCTACCTCATCCTGACCTCCGAGGACGTCGCCATGCAGGACTTCTGCCGCGCCGTCTGCGGCTTCCACTACTTCACATTCCCCTCCATGGTGGGCTACACGCTCCCCTACGCTTGGATCGGAAACTCCGGCAAGCAGTGCCCGGAGGTCTGCGCCTACCCGTTTGCTCTTCCCGGCTACATGGCCGGAGGCGGTCCCGGAGCTCTGTCGCCTCCGAACAAGGACGTCGGCGTCGACGGTATGATCAGTGTGATCGGCCACGAGCTGGCCGAGCTGTCGTCGAACCCTCTTGTCAATGCCTGGTACGCCGGCGAGGACCCGACGGCGCCGACTGAGATCGGGGATTTGTGCGAGGGGTTGTACGGAACAGGAGGCGGCGGTGGGTACATTGGGCAGGTGATGAGGGACAGAGAAGGGAGGACGTTCAATGTGAATGGGAGGAAGGGGAGGAAGTTCTTGGTGCAGTGGCTTTGGAGCCCTGAACTGAAGGCCTGTGCTGGGCCTAATGCTATGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phi_1

Protein Analysis

284

Amino Acids

30.79

Weight (kDa)

6.3

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 1 - 279 2.4e-99 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012778)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17230
fragaria_vesca FvH4_2g16740 FvH4_2g16740 FvH4_6g47290
prunus_persica Prupe.8G179300_v2.0.a1
pyrus_communis pycom05g13200 pycom10g11930
rosa_chinensis RchiOBHm_Chr6g0280861
rosa_laevigata RLG00000013025
rosa_multiflora Rmu_sc0023262.1_g000001 Rmu_ssc0000024.1_g000004
rosa_roxburghii Rroxscaffold_7G00187550
rosa_rugosa Rorug06G0135800
rosa_samantha Rh6AG248600 Rh6BG250300 Rh6CG251300 Rh6DG242900
rosa_wichuraiana Rw6G021490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 721
AasI GACNNNNNNGTC 1 cut(s) 566
AatII GACGTC 2 cut(s) 366, 564
Acc36I ACCTGC 2 cut(s) 271, 721
AccB1I GGYRCC 2 cut(s) 188, 661
AccB7I CCANNNNNTGG 1 cut(s) 601
AccBSI CCGCTC 2 cut(s) 128, 204
AccI GTMKAC 2 cut(s) 321, 570
AccII CGCG 2 cut(s) 123, 387
AclWI GGATC 2 cut(s) 344, 461
AcoI YGGCCR 4 cut(s) 52, 519, 592, 603
AcuI CTGAAG 1 cut(s) 842
AcyI GRCGYC 5 cut(s) 189, 363, 561, 567, 662
AfaI GTAC 5 cut(s) 50, 242, 641, 698, 722
AfiI CCNNNNNNNGG 6 cut(s) 85, 153, 424, 450, 601, 834
AgsI TTSAA 1 cut(s) 763
AjnI CCWGG 1 cut(s) 635
AluBI AGCT 4 cut(s) 76, 539, 601, 610
AluI AGCT 4 cut(s) 76, 539, 601, 610
Alw21I GWGCWC 2 cut(s) 228, 541
Alw26I GTCTC 2 cut(s) 169, 202
AlwI GGATC 2 cut(s) 344, 461
AoxI GGCC 7 cut(s) 52, 60, 519, 592, 603, 825, 836
AspLEI GCGC 6 cut(s) 125, 159, 191, 389, 491, 664
AspS9I GGNCC 5 cut(s) 5, 60, 530, 652, 836
AsuC2I CCSGG 4 cut(s) 317, 479, 510, 534
AsuHPI GGTGA 2 cut(s) 253, 745
AvaII GGWCC 3 cut(s) 5, 530, 652
BaeGI GKGCMC 1 cut(s) 479
BaeI ACNNNNGTAYC 2 cut(s) 40, 73
BanI GGYRCC 2 cut(s) 188, 661
BanII GRGCYC 2 cut(s) 541, 815
BauI CACGAG 1 cut(s) 596
Bbv12I GWGCWC 2 cut(s) 228, 541
BccI CCATC 1 cut(s) 110
BceAI ACGGC 6 cut(s) 39, 67, 265, 281, 374, 675
BciT130I CCWGG 1 cut(s) 637
BclI TGATCA 1 cut(s) 579
BcnI CCSGG 4 cut(s) 317, 479, 510, 534
BcoDI GTCTC 2 cut(s) 169, 202
BfoI RGCGCY 2 cut(s) 192, 665
BfuAI ACCTGC 2 cut(s) 271, 721
BglII AGATCT 1 cut(s) 302
BisI GCNGC 4 cut(s) 126, 385, 397, 712
BlsI GCNGC 4 cut(s) 127, 386, 398, 713
BmcAI AGTACT 1 cut(s) 242
Bme1390I CCNGG 5 cut(s) 317, 479, 510, 534, 637
Bme18I GGWCC 3 cut(s) 5, 530, 652
BmgT120I GGNCC 5 cut(s) 5, 60, 530, 652, 836
BmiI GGNNCC 7 cut(s) 6, 7, 190, 532, 654, 663, 812
BmrFI CCNGG 5 cut(s) 317, 479, 510, 534, 637
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 4 cut(s) 317, 479, 510, 534
BsaHI GRCGYC 5 cut(s) 189, 363, 561, 567, 662
BsaJI CCNNGG 3 cut(s) 247, 357, 423
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 6 cut(s) 85, 153, 424, 450, 601, 834
Bse118I RCCGGY 2 cut(s) 185, 644
BseBI CCWGG 1 cut(s) 637
BseDI CCNNGG 3 cut(s) 247, 357, 423
BseGI GGATG 1 cut(s) 345
BseLI CCNNNNNNNGG 6 cut(s) 85, 153, 424, 450, 601, 834
BseMII CTCAG 1 cut(s) 660
BseRI GAGGAG 2 cut(s) 7, 68
BseSI GKGCMC 1 cut(s) 479
BseX3I CGGCCG 1 cut(s) 52
BseYI CCCAGC 1 cut(s) 833
BsgI GTGCAG 1 cut(s) 818
Bsh1236I CGCG 2 cut(s) 123, 387
Bsh1285I CGRYCG 2 cut(s) 55, 321
BshFI GGCC 7 cut(s) 54, 62, 521, 594, 605, 827, 838
BshNI GGYRCC 2 cut(s) 188, 661
BsiEI CGRYCG 2 cut(s) 55, 321
BsiHKAI GWGCWC 2 cut(s) 228, 541
BsiSI CCGG 8 cut(s) 186, 317, 465, 479, 510, 522, 534, 645
BslFI GGGAC 2 cut(s) 516, 755
BslI CCNNNNNNNGG 6 cut(s) 85, 153, 424, 450, 601, 834
BsmAI GTCTC 2 cut(s) 169, 202
BsmBI CGTCTC 1 cut(s) 202
BsmFI GGGAC 2 cut(s) 516, 755
BsnI GGCC 7 cut(s) 54, 62, 521, 594, 605, 827, 838
Bsp1286I GDGCHC 4 cut(s) 228, 479, 541, 815
Bsp143I GATC 6 cut(s) 302, 336, 453, 579, 588, 672
Bsp19I CCATGG 1 cut(s) 423
BspANI GGCC 7 cut(s) 54, 62, 521, 594, 605, 827, 838
BspCNI CTCAG 1 cut(s) 661
BspFNI CGCG 2 cut(s) 123, 387
BspLI GGNNCC 7 cut(s) 6, 7, 190, 532, 654, 663, 812
BspMI ACCTGC 2 cut(s) 271, 721
BspPI GGATC 2 cut(s) 344, 461
BspQI GCTCTTC 1 cut(s) 510
BspT107I GGYRCC 2 cut(s) 188, 661
BsrBI CCGCTC 2 cut(s) 128, 204
BsrFI RCCGGY 2 cut(s) 185, 644
BssAI RCCGGY 2 cut(s) 185, 644
BssECI CCNNGG 3 cut(s) 247, 357, 423
BssMI GATC 6 cut(s) 302, 336, 453, 579, 588, 672
BssNI GRCGYC 5 cut(s) 189, 363, 561, 567, 662
BssSI CACGAG 1 cut(s) 596
BssT1I CCWWGG 1 cut(s) 423
Bst2BI CACGAG 1 cut(s) 596
Bst2UI CCWGG 1 cut(s) 637
Bst4CI ACNGT 2 cut(s) 163, 575
Bst6I CTCTTC 1 cut(s) 510
BstACI GRCGYC 5 cut(s) 189, 363, 561, 567, 662
BstAPI GCANNNNNTGC 1 cut(s) 474
BstC8I GCNNGC 5 cut(s) 228, 254, 470, 603, 646
BstDEI CTNAG 1 cut(s) 669
BstDSI CCRYGG 2 cut(s) 247, 423
BstENI CCTNNNNNAGG 1 cut(s) 83
BstF5I GGATG 1 cut(s) 345
BstFNI CGCG 2 cut(s) 123, 387
BstH2I RGCGCY 2 cut(s) 192, 665
BstHHI GCGC 6 cut(s) 125, 159, 191, 389, 491, 664
BstKTI GATC 6 cut(s) 305, 339, 456, 582, 591, 675
BstMAI GTCTC 2 cut(s) 169, 202
BstMBI GATC 6 cut(s) 302, 336, 453, 579, 588, 672
BstMCI CGRYCG 2 cut(s) 55, 321
BstMWI GCNNNNNNNGC 4 cut(s) 393, 474, 607, 641
BstNI CCWGG 1 cut(s) 637
BstSCI CCNGG 5 cut(s) 315, 477, 508, 532, 635
BstSLI GKGCMC 1 cut(s) 479
BstUI CGCG 2 cut(s) 123, 387
BstX2I RGATCY 2 cut(s) 302, 336
BstYI RGATCY 2 cut(s) 302, 336
BstZI CGGCCG 1 cut(s) 52
BsuRI GGCC 7 cut(s) 54, 62, 521, 594, 605, 827, 838
BtgI CCRYGG 2 cut(s) 247, 423
BtgZI GCGATG 1 cut(s) 271
BtsCI GGATG 1 cut(s) 345
BtsI GCAGTG 2 cut(s) 479, 806
BtsIMutI CAGTG 4 cut(s) 159, 479, 589, 806
BveI ACCTGC 2 cut(s) 271, 721
Cac8I GCNNGC 5 cut(s) 228, 254, 470, 603, 646
CfoI GCGC 6 cut(s) 125, 159, 191, 389, 491, 664
Cfr10I RCCGGY 2 cut(s) 185, 644
Cfr13I GGNCC 5 cut(s) 5, 60, 530, 652, 836
CseI GACGC 1 cut(s) 556
Csp6I GTAC 5 cut(s) 49, 241, 640, 697, 721
CviAII CATG 3 cut(s) 370, 424, 517
CviQI GTAC 5 cut(s) 49, 241, 640, 697, 721
DdeI CTNAG 1 cut(s) 669
DinI GGCGCC 2 cut(s) 190, 663
DpnI GATC 6 cut(s) 304, 338, 455, 581, 590, 674
DpnII GATC 6 cut(s) 302, 336, 453, 579, 588, 672
DrdI GACNNNNNNGTC 1 cut(s) 566
DseDI GACNNNNNNGTC 1 cut(s) 566
EaeI YGGCCR 4 cut(s) 52, 519, 592, 603
EagI CGGCCG 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 510
EarI CTCTTC 1 cut(s) 510
Ecl136II GAGCTC 1 cut(s) 539
EclXI CGGCCG 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 423
Eco147I AGGCCT 1 cut(s) 827
Eco24I GRGCYC 2 cut(s) 541, 815
Eco47I GGWCC 3 cut(s) 5, 530, 652
Eco52I CGGCCG 1 cut(s) 52
Eco53kI GAGCTC 1 cut(s) 539
Eco57I CTGAAG 1 cut(s) 842
EcoICRI GAGCTC 1 cut(s) 539
EcoNI CCTNNNNNAGG 1 cut(s) 83
EcoO109I RGGNCCY 2 cut(s) 5, 652
EcoRII CCWGG 1 cut(s) 635
EcoT14I CCWWGG 1 cut(s) 423
EcoT38I GRGCYC 2 cut(s) 541, 815
EgeI GGCGCC 2 cut(s) 190, 663
EheI GGCGCC 2 cut(s) 190, 663
ErhI CCWWGG 1 cut(s) 423
Esp3I CGTCTC 1 cut(s) 202
FaeI CATG 3 cut(s) 373, 427, 520
FaiI YATR 5 cut(s) 371, 425, 518, 578, 848
FaqI GGGAC 2 cut(s) 516, 755
FatI CATG 3 cut(s) 369, 423, 516
FauI CCCGC 3 cut(s) 209, 211, 272
FbaI TGATCA 1 cut(s) 579
FblI GTMKAC 2 cut(s) 321, 570
Fnu4HI GCNGC 4 cut(s) 126, 385, 397, 712
FokI GGATG 1 cut(s) 332
FriOI GRGCYC 2 cut(s) 541, 815
Fsp4HI GCNGC 4 cut(s) 126, 385, 397, 712
GlaI GCGC 6 cut(s) 124, 158, 190, 388, 490, 663
GluI GCNGC 4 cut(s) 126, 385, 397, 712
GsaI CCCAGC 1 cut(s) 837
HaeII RGCGCY 2 cut(s) 192, 665
HaeIII GGCC 7 cut(s) 54, 62, 521, 594, 605, 827, 838
HapII CCGG 8 cut(s) 186, 317, 465, 479, 510, 522, 534, 645
HgaI GACGC 1 cut(s) 556
HhaI GCGC 6 cut(s) 125, 159, 191, 389, 491, 664
Hin1I GRCGYC 5 cut(s) 189, 363, 561, 567, 662
Hin1II CATG 3 cut(s) 373, 427, 520
Hin6I GCGC 6 cut(s) 123, 157, 189, 387, 489, 662
HinP1I GCGC 6 cut(s) 123, 157, 189, 387, 489, 662
HincII GTYRAC 2 cut(s) 322, 571
HindII GTYRAC 2 cut(s) 322, 571
HpaII CCGG 8 cut(s) 186, 317, 465, 479, 510, 522, 534, 645
HphI GGTGA 2 cut(s) 253, 745
Hpy166II GTNNAC 2 cut(s) 322, 571
Hpy188I TCNGA 4 cut(s) 302, 358, 458, 552
Hpy188III TCNNGA 1 cut(s) 349
Hpy8I GTNNAC 2 cut(s) 322, 571
HpyAV CCTTC 3 cut(s) 743, 772, 817
HpyCH4III ACNGT 2 cut(s) 163, 575
HpyCH4IV ACGT 4 cut(s) 195, 363, 561, 758
HpyCH4V TGCA 2 cut(s) 373, 799
HpyF10VI GCNNNNNNNGC 4 cut(s) 393, 474, 607, 641
HpyF3I CTNAG 1 cut(s) 669
HpySE526I ACGT 4 cut(s) 195, 363, 561, 758
Hsp92I GRCGYC 5 cut(s) 189, 363, 561, 567, 662
Hsp92II CATG 3 cut(s) 373, 427, 520
HspAI GCGC 6 cut(s) 123, 157, 189, 387, 489, 662
KasI GGCGCC 2 cut(s) 188, 661
KflI GGGWCCC 1 cut(s) 5
KroI GCCGGC 1 cut(s) 644
KroNI GCCGGC 1 cut(s) 646
Ksp22I TGATCA 1 cut(s) 579
Kzo9I GATC 6 cut(s) 302, 336, 453, 579, 588, 672
LguI GCTCTTC 1 cut(s) 510
LmnI GCTCC 8 cut(s) 81, 133, 209, 223, 313, 444, 536, 810
MaeII ACGT 4 cut(s) 195, 363, 561, 758
MalI GATC 6 cut(s) 304, 338, 455, 581, 590, 674
MbiI CCGCTC 2 cut(s) 128, 204
MboI GATC 6 cut(s) 302, 336, 453, 579, 588, 672
MboII GAAGA 1 cut(s) 497
MflI RGATCY 2 cut(s) 302, 336
MhlI GDGCHC 4 cut(s) 228, 479, 541, 815
Mly113I GGCGCC 2 cut(s) 189, 662
MreI CGCCGGCG 1 cut(s) 644
MroNI GCCGGC 1 cut(s) 644
MseI TTAA 2 cut(s) 30, 853
MspI CCGG 8 cut(s) 186, 317, 465, 479, 510, 522, 534, 645
MspR9I CCNGG 5 cut(s) 317, 479, 510, 534, 637
MvaI CCWGG 1 cut(s) 637
MvnI CGCG 2 cut(s) 123, 387
MwoI GCNNNNNNNGC 4 cut(s) 393, 474, 607, 641
NaeI GCCGGC 1 cut(s) 646
NarI GGCGCC 2 cut(s) 189, 662
NciI CCSGG 4 cut(s) 317, 479, 510, 534
NcoI CCATGG 1 cut(s) 423
NdeII GATC 6 cut(s) 302, 336, 453, 579, 588, 672
NgoMIV GCCGGC 1 cut(s) 644
NlaIII CATG 3 cut(s) 373, 427, 520
NlaIV GGNNCC 7 cut(s) 6, 7, 190, 532, 654, 663, 812
NmeAIII GCCGAG 2 cut(s) 172, 631
PaqCI CACCTGC 1 cut(s) 721
PceI AGGCCT 1 cut(s) 827
PciSI GCTCTTC 1 cut(s) 510
PcsI WCGNNNNNNNCGW 3 cut(s) 294, 567, 603
PdiI GCCGGC 1 cut(s) 646
PflMI CCANNNNNTGG 1 cut(s) 601
PfoI TCCNGGA 1 cut(s) 532
PkrI GCNGC 4 cut(s) 127, 386, 398, 713
PluTI GGCGCC 2 cut(s) 192, 665
PpuMI RGGWCCY 2 cut(s) 5, 652
Psp124BI GAGCTC 1 cut(s) 541
Psp5II RGGWCCY 2 cut(s) 5, 652
Psp6I CCWGG 1 cut(s) 635
PspFI CCCAGC 1 cut(s) 833
PspGI CCWGG 1 cut(s) 635
PspN4I GGNNCC 7 cut(s) 6, 7, 190, 532, 654, 663, 812
PspPI GGNCC 5 cut(s) 5, 60, 530, 652, 836
PspPPI RGGWCCY 2 cut(s) 5, 652
PsrI GAACNNNNNNTAC 2 cut(s) 323, 355
PsuI RGATCY 2 cut(s) 302, 336
RsaI GTAC 5 cut(s) 50, 242, 641, 698, 722
RsaNI GTAC 5 cut(s) 49, 241, 640, 697, 721
SacI GAGCTC 1 cut(s) 541
SalI GTCGAC 2 cut(s) 320, 569
SapI GCTCTTC 1 cut(s) 510
SaqAI TTAA 2 cut(s) 30, 853
SatI GCNGC 4 cut(s) 126, 385, 397, 712
Sau3AI GATC 6 cut(s) 302, 336, 453, 579, 588, 672
Sau96I GGNCC 5 cut(s) 5, 60, 530, 652, 836
ScaI AGTACT 1 cut(s) 242
ScrFI CCNGG 5 cut(s) 317, 479, 510, 534, 637
SduI GDGCHC 4 cut(s) 228, 479, 541, 815
SfoI GGCGCC 2 cut(s) 190, 663
SgrAI CRCCGGYG 1 cut(s) 644
SgrDI CGTCGACG 1 cut(s) 569
SinI GGWCC 3 cut(s) 5, 530, 652
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
SseBI AGGCCT 1 cut(s) 827
SspDI GGCGCC 2 cut(s) 188, 661
SstI GAGCTC 1 cut(s) 541
StuI AGGCCT 1 cut(s) 827
StyD4I CCNGG 5 cut(s) 315, 477, 508, 532, 635
StyI CCWWGG 1 cut(s) 423
TaaI ACNGT 2 cut(s) 163, 575
TaiI ACGT 4 cut(s) 198, 366, 564, 761
TaqI TCGA 3 cut(s) 321, 570, 617
TatI WGTACW 1 cut(s) 240
TauI GCSGC 4 cut(s) 128, 387, 399, 714
Tru1I TTAA 2 cut(s) 30, 853
Tru9I TTAA 2 cut(s) 30, 853
TscAI CASTG 4 cut(s) 166, 479, 589, 806
TspGWI ACGGA 6 cut(s) 120, 130, 196, 262, 300, 714
TspRI CASTG 4 cut(s) 166, 479, 589, 806
Van91I CCANNNNNTGG 1 cut(s) 601
VpaK11BI GGWCC 3 cut(s) 5, 530, 652
XagI CCTNNNNNAGG 1 cut(s) 83
XmiI GTMKAC 2 cut(s) 321, 570
ZraI GACGTC 2 cut(s) 364, 562
ZrmI AGTACT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.