FvH4_6g47290

Phosphate-induced protein 1 conserved region

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
35898069 .. 35899094
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g47290.t1

Sequence Viewer

Length: 1026 bp
ATGTCGTCCTCCCTCCTCCTCCTCCTCCTCCCCTTCTTCCTCCTCCTCTCTTCCATTGCCGCCGCACCATCTTCCGTTCAGACCCTCAACACCCTCTTCAACCCCAAGCTCCCCCCACGCAGCCTCTCCTCCTCCAAGAAGTTCGAAGGCTCCTCAGATCTAGTCCACCTCCGCTACCACATGGGCCCCGTCCTCTCCTCCCACCCCATCAACATCTACCTCATCTGGTACGGCCGTTGGTCCCTCCCCCAGAAGCTCCTCATCAAGGACTTCCTCCTCTCCATCTCCACCACCGCCGCCCCTTCCCCCTCCGTCGCCGAGTGGTGGCGCACTGTCTCCCTCTACACCGACCAGACCGGCGCCAATGTCTCACGCTCCGTTGTCGTCGCCGGGGAACACGCTGACGTTAAATACTCCCAGGGGAAGGCCCTCACGCGCCTCTCCGTGCAGCAGGTGATAGGTAACGCCGTCAGATCTGCGCCGTTTCCGGCCGACCACAAGCACGGGATCTACCTCGTACTCACCTCCGACGACGTCACCATGCAGGACTTCTGCCGCGCCGTCTGCGGCTTCCATTATTTCACATTCCCTTCCATGGTGGGTTATACTCTCCCTTACGCTTGGATCGGTAACTCCGCCAAGCAGTGCCCGGAGGTCTGCGCCTACCCGTTTGCGCTTCCTGCCTACATGGGCGGAGGAGGCCCCGGAGCTCTGTCGCCGCCGAATAAAGATGTCGGCGTCGACGGGATGATCAGTGTCATCGGGCACGAGCTGGCCGAGCTGTCGTCGAACCCTCTTGTGAATGCTTGGTACGCCGGGGAGGACCCGACGGCGCCGACGGAGATCGGGGACTTGTGCGAGGGGCTGTACGGGACGGGAGGCGGAGGAGGGTACATTGGGCAGGTGATGAAGGATAGAGGAGGGAGGACGTTCAATGTGAATGGGAGGAAAGGGAGGAAGTTCTTGCTGCAGTGGATTTGGAGCCCTGAGCTCAAGGCCTGTGCTGGGCCTAATGCTTTGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

342

Amino Acids

36.8

Weight (kDa)

8.15

Isoelectric Point (pI)

48.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 57 - 336 9.2e-101 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012778)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 442, 892
AatII GACGTC 1 cut(s) 537
Acc36I ACCTGC 2 cut(s) 442, 892
AccB1I GGYRCC 2 cut(s) 359, 832
AccI GTMKAC 1 cut(s) 741
AccII CGCG 2 cut(s) 436, 558
AclWI GGATC 2 cut(s) 515, 632
AcoI YGGCCR 3 cut(s) 232, 489, 774
AcyI GRCGYC 4 cut(s) 360, 534, 738, 833
AfaI GTAC 5 cut(s) 230, 519, 812, 869, 893
AfiI CCNNNNNNNGG 5 cut(s) 265, 324, 424, 595, 1005
AgsI TTSAA 2 cut(s) 100, 934
AjnI CCWGG 1 cut(s) 417
AluBI AGCT 6 cut(s) 109, 256, 710, 772, 781, 991
AluI AGCT 6 cut(s) 109, 256, 710, 772, 781, 991
Alw21I GWGCWC 2 cut(s) 712, 993
Alw26I GTCTC 2 cut(s) 340, 373
AlwI GGATC 2 cut(s) 515, 632
AoxI GGCC 8 cut(s) 184, 232, 426, 489, 700, 774, 996, 1007
ApaI GGGCCC 1 cut(s) 188
ApeKI GCWGC 3 cut(s) 120, 448, 967
AspLEI GCGC 8 cut(s) 330, 362, 438, 481, 560, 662, 676, 835
AspS9I GGNCC 7 cut(s) 184, 185, 240, 427, 701, 823, 1007
AsuC2I CCSGG 4 cut(s) 391, 650, 705, 817
AsuHPI GGTGA 4 cut(s) 466, 514, 529, 916
AsuII TTCGAA 1 cut(s) 144
AvaII GGWCC 2 cut(s) 240, 823
BaeGI GKGCMC 3 cut(s) 188, 650, 768
BaeI ACNNNNGTAYC 2 cut(s) 220, 253
BanI GGYRCC 2 cut(s) 359, 832
BanII GRGCYC 4 cut(s) 188, 712, 986, 993
BauI CACGAG 1 cut(s) 767
Bbv12I GWGCWC 2 cut(s) 712, 993
BbvI GCAGC 3 cut(s) 132, 460, 954
BccI CCATC 3 cut(s) 76, 215, 290
BceAI ACGGC 6 cut(s) 219, 247, 452, 466, 545, 846
BciT130I CCWGG 1 cut(s) 419
BclI TGATCA 1 cut(s) 750
BcnI CCSGG 4 cut(s) 391, 650, 705, 817
BcoDI GTCTC 2 cut(s) 340, 373
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 968
BfoI RGCGCY 2 cut(s) 363, 836
BfuAI ACCTGC 2 cut(s) 442, 892
BglII AGATCT 2 cut(s) 157, 473
BisI GCNGC 9 cut(s) 60, 63, 121, 297, 449, 556, 568, 719, 968
BlsI GCNGC 9 cut(s) 61, 64, 122, 298, 450, 557, 569, 720, 969
Bme1390I CCNGG 5 cut(s) 391, 419, 650, 705, 817
Bme18I GGWCC 2 cut(s) 240, 823
BmgT120I GGNCC 7 cut(s) 184, 185, 240, 427, 701, 823, 1007
BmiI GGNNCC 9 cut(s) 151, 186, 187, 242, 361, 703, 825, 834, 983
BmrFI CCNGG 5 cut(s) 391, 419, 650, 705, 817
Bpu10I CCTNAGC 1 cut(s) 987
Bpu14I TTCGAA 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 977
BpuMI CCSGG 4 cut(s) 391, 650, 705, 817
BsaHI GRCGYC 4 cut(s) 360, 534, 738, 833
BsaJI CCNNGG 6 cut(s) 390, 417, 418, 594, 703, 816
Bsc4I CCNNNNNNNGG 5 cut(s) 265, 324, 424, 595, 1005
Bse118I RCCGGY 1 cut(s) 356
Bse3DI GCAATG 1 cut(s) 54
BseBI CCWGG 1 cut(s) 419
BseDI CCNNGG 6 cut(s) 390, 417, 418, 594, 703, 816
BseGI GGATG 1 cut(s) 753
BseLI CCNNNNNNNGG 5 cut(s) 265, 324, 424, 595, 1005
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 2 cut(s) 168, 978
BseSI GKGCMC 3 cut(s) 188, 650, 768
BseX3I CGGCCG 2 cut(s) 232, 489
BseXI GCAGC 3 cut(s) 132, 460, 954
BseYI CCCAGC 1 cut(s) 1004
BsgI GTGCAG 1 cut(s) 467
Bsh1236I CGCG 2 cut(s) 436, 558
Bsh1285I CGRYCG 2 cut(s) 235, 492
BshFI GGCC 8 cut(s) 186, 234, 428, 491, 702, 776, 998, 1009
BshNI GGYRCC 2 cut(s) 359, 832
BsiEI CGRYCG 2 cut(s) 235, 492
BsiHKAI GWGCWC 2 cut(s) 712, 993
BsiSI CCGG 6 cut(s) 357, 390, 488, 650, 705, 816
BslFI GGGAC 3 cut(s) 226, 863, 886
BslI CCNNNNNNNGG 5 cut(s) 265, 324, 424, 595, 1005
BsmAI GTCTC 2 cut(s) 340, 373
BsmFI GGGAC 3 cut(s) 226, 863, 886
BsmI GAATGC 1 cut(s) 808
BsnI GGCC 8 cut(s) 186, 234, 428, 491, 702, 776, 998, 1009
Bsp119I TTCGAA 1 cut(s) 144
Bsp120I GGGCCC 1 cut(s) 184
Bsp1286I GDGCHC 6 cut(s) 188, 650, 712, 768, 986, 993
Bsp143I GATC 6 cut(s) 157, 473, 507, 624, 750, 843
Bsp19I CCATGG 1 cut(s) 594
BspANI GGCC 8 cut(s) 186, 234, 428, 491, 702, 776, 998, 1009
BspCNI CTCAG 2 cut(s) 167, 979
BspFNI CGCG 2 cut(s) 436, 558
BspLI GGNNCC 9 cut(s) 151, 186, 187, 242, 361, 703, 825, 834, 983
BspMAI CTGCAG 1 cut(s) 972
BspMI ACCTGC 2 cut(s) 442, 892
BspPI GGATC 2 cut(s) 515, 632
BspT104I TTCGAA 1 cut(s) 144
BspT107I GGYRCC 2 cut(s) 359, 832
BsrDI GCAATG 1 cut(s) 54
BsrFI RCCGGY 1 cut(s) 356
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 6 cut(s) 390, 417, 418, 594, 703, 816
BssMI GATC 6 cut(s) 157, 473, 507, 624, 750, 843
BssNI GRCGYC 4 cut(s) 360, 534, 738, 833
BssSI CACGAG 1 cut(s) 767
BssT1I CCWWGG 1 cut(s) 594
Bst2BI CACGAG 1 cut(s) 767
Bst2UI CCWGG 1 cut(s) 419
Bst4CI ACNGT 1 cut(s) 334
Bst6I CTCTTC 2 cut(s) 55, 101
BstACI GRCGYC 4 cut(s) 360, 534, 738, 833
BstBI TTCGAA 1 cut(s) 144
BstC8I GCNNGC 1 cut(s) 774
BstDEI CTNAG 2 cut(s) 154, 987
BstDSI CCRYGG 1 cut(s) 594
BstENI CCTNNNNNAGG 1 cut(s) 263
BstF5I GGATG 1 cut(s) 753
BstFNI CGCG 2 cut(s) 436, 558
BstH2I RGCGCY 2 cut(s) 363, 836
BstHHI GCGC 8 cut(s) 330, 362, 438, 481, 560, 662, 676, 835
BstKTI GATC 6 cut(s) 160, 476, 510, 627, 753, 846
BstMAI GTCTC 2 cut(s) 340, 373
BstMBI GATC 6 cut(s) 157, 473, 507, 624, 750, 843
BstMCI CGRYCG 2 cut(s) 235, 492
BstMWI GCNNNNNNNGC 5 cut(s) 564, 680, 699, 778, 812
BstNI CCWGG 1 cut(s) 419
BstSCI CCNGG 5 cut(s) 389, 417, 648, 703, 815
BstSFI CTRYAG 1 cut(s) 968
BstSLI GKGCMC 3 cut(s) 188, 650, 768
BstUI CGCG 2 cut(s) 436, 558
BstV1I GCAGC 3 cut(s) 132, 460, 954
BstX2I RGATCY 3 cut(s) 157, 473, 507
BstYI RGATCY 3 cut(s) 157, 473, 507
BstZI CGGCCG 2 cut(s) 232, 489
BsuRI GGCC 8 cut(s) 186, 234, 428, 491, 702, 776, 998, 1009
BtgI CCRYGG 1 cut(s) 594
BtsCI GGATG 1 cut(s) 753
BtsI GCAGTG 2 cut(s) 650, 977
BtsIMutI CAGTG 4 cut(s) 330, 650, 760, 977
BveI ACCTGC 2 cut(s) 442, 892
Cac8I GCNNGC 1 cut(s) 774
CfoI GCGC 8 cut(s) 330, 362, 438, 481, 560, 662, 676, 835
Cfr10I RCCGGY 1 cut(s) 356
Cfr13I GGNCC 7 cut(s) 184, 185, 240, 427, 701, 823, 1007
CseI GACGC 1 cut(s) 727
Csp6I GTAC 5 cut(s) 229, 518, 811, 868, 892
CviAII CATG 4 cut(s) 181, 541, 595, 688
CviQI GTAC 5 cut(s) 229, 518, 811, 868, 892
DdeI CTNAG 2 cut(s) 154, 987
DinI GGCGCC 2 cut(s) 361, 834
DpnI GATC 6 cut(s) 159, 475, 509, 626, 752, 845
DpnII GATC 6 cut(s) 157, 473, 507, 624, 750, 843
EaeI YGGCCR 3 cut(s) 232, 489, 774
EagI CGGCCG 2 cut(s) 232, 489
Eam1104I CTCTTC 2 cut(s) 55, 101
EarI CTCTTC 2 cut(s) 55, 101
EciI GGCGGA 3 cut(s) 625, 708, 897
Ecl136II GAGCTC 2 cut(s) 710, 991
EclXI CGGCCG 2 cut(s) 232, 489
Eco130I CCWWGG 1 cut(s) 594
Eco147I AGGCCT 1 cut(s) 998
Eco24I GRGCYC 4 cut(s) 188, 712, 986, 993
Eco47I GGWCC 2 cut(s) 240, 823
Eco52I CGGCCG 2 cut(s) 232, 489
Eco53kI GAGCTC 2 cut(s) 710, 991
EcoICRI GAGCTC 2 cut(s) 710, 991
EcoNI CCTNNNNNAGG 1 cut(s) 263
EcoO109I RGGNCCY 4 cut(s) 185, 427, 701, 823
EcoRII CCWGG 1 cut(s) 417
EcoT14I CCWWGG 1 cut(s) 594
EcoT38I GRGCYC 4 cut(s) 188, 712, 986, 993
EgeI GGCGCC 2 cut(s) 361, 834
EheI GGCGCC 2 cut(s) 361, 834
ErhI CCWWGG 1 cut(s) 594
FaeI CATG 4 cut(s) 184, 544, 598, 691
FaiI YATR 5 cut(s) 182, 542, 596, 606, 689
FaqI GGGAC 3 cut(s) 226, 863, 886
FatI CATG 4 cut(s) 180, 540, 594, 687
FbaI TGATCA 1 cut(s) 750
FblI GTMKAC 1 cut(s) 741
Fnu4HI GCNGC 9 cut(s) 60, 63, 121, 297, 449, 556, 568, 719, 968
FokI GGATG 1 cut(s) 760
FriOI GRGCYC 4 cut(s) 188, 712, 986, 993
Fsp4HI GCNGC 9 cut(s) 60, 63, 121, 297, 449, 556, 568, 719, 968
FspBI CTAG 1 cut(s) 161
GlaI GCGC 8 cut(s) 329, 361, 437, 480, 559, 661, 675, 834
GluI GCNGC 9 cut(s) 60, 63, 121, 297, 449, 556, 568, 719, 968
GsaI CCCAGC 1 cut(s) 1008
HaeII RGCGCY 2 cut(s) 363, 836
HaeIII GGCC 8 cut(s) 186, 234, 428, 491, 702, 776, 998, 1009
HapII CCGG 6 cut(s) 357, 390, 488, 650, 705, 816
HgaI GACGC 1 cut(s) 727
HhaI GCGC 8 cut(s) 330, 362, 438, 481, 560, 662, 676, 835
Hin1I GRCGYC 4 cut(s) 360, 534, 738, 833
Hin1II CATG 4 cut(s) 184, 544, 598, 691
Hin6I GCGC 8 cut(s) 328, 360, 436, 479, 558, 660, 674, 833
HinP1I GCGC 8 cut(s) 328, 360, 436, 479, 558, 660, 674, 833
HincII GTYRAC 1 cut(s) 742
HindII GTYRAC 1 cut(s) 742
HpaII CCGG 6 cut(s) 357, 390, 488, 650, 705, 816
HphI GGTGA 4 cut(s) 466, 514, 529, 916
Hpy166II GTNNAC 2 cut(s) 166, 742
Hpy188I TCNGA 4 cut(s) 81, 157, 473, 529
Hpy8I GTNNAC 2 cut(s) 166, 742
Hpy99I CGWCG 9 cut(s) 317, 389, 533, 536, 743, 746, 790, 832, 841
HpyAV CCTTC 6 cut(s) 43, 140, 312, 418, 600, 904
HpyCH4III ACNGT 1 cut(s) 334
HpyCH4IV ACGT 3 cut(s) 405, 534, 929
HpyCH4V TGCA 3 cut(s) 448, 544, 970
HpyF10VI GCNNNNNNNGC 5 cut(s) 564, 680, 699, 778, 812
HpyF3I CTNAG 2 cut(s) 154, 987
HpySE526I ACGT 3 cut(s) 405, 534, 929
Hsp92I GRCGYC 4 cut(s) 360, 534, 738, 833
Hsp92II CATG 4 cut(s) 184, 544, 598, 691
HspAI GCGC 8 cut(s) 328, 360, 436, 479, 558, 660, 674, 833
KasI GGCGCC 2 cut(s) 359, 832
Ksp22I TGATCA 1 cut(s) 750
Kzo9I GATC 6 cut(s) 157, 473, 507, 624, 750, 843
LmnI GCTCC 6 cut(s) 114, 155, 261, 380, 707, 981
Lsp1109I GCAGC 3 cut(s) 132, 460, 954
MaeI CTAG 1 cut(s) 161
MaeII ACGT 3 cut(s) 405, 534, 929
MaeIII GTNAC 3 cut(s) 461, 535, 629
MalI GATC 6 cut(s) 159, 475, 509, 626, 752, 845
MboI GATC 6 cut(s) 157, 473, 507, 624, 750, 843
MboII GAAGA 4 cut(s) 28, 42, 63, 88
MflI RGATCY 3 cut(s) 157, 473, 507
MhlI GDGCHC 6 cut(s) 188, 650, 712, 768, 986, 993
Mly113I GGCGCC 2 cut(s) 360, 833
MmeI TCCRAC 1 cut(s) 552
MseI TTAA 1 cut(s) 408
MspI CCGG 6 cut(s) 357, 390, 488, 650, 705, 816
MspR9I CCNGG 5 cut(s) 391, 419, 650, 705, 817
Mva1269I GAATGC 1 cut(s) 808
MvaI CCWGG 1 cut(s) 419
MvnI CGCG 2 cut(s) 436, 558
MwoI GCNNNNNNNGC 5 cut(s) 564, 680, 699, 778, 812
NarI GGCGCC 2 cut(s) 360, 833
NciI CCSGG 4 cut(s) 391, 650, 705, 817
NcoI CCATGG 1 cut(s) 594
NdeII GATC 6 cut(s) 157, 473, 507, 624, 750, 843
NlaIII CATG 4 cut(s) 184, 544, 598, 691
NlaIV GGNNCC 9 cut(s) 151, 186, 187, 242, 361, 703, 825, 834, 983
NmeAIII GCCGAG 2 cut(s) 343, 802
NmuCI GTSAC 1 cut(s) 535
NspV TTCGAA 1 cut(s) 144
PaqCI CACCTGC 2 cut(s) 442, 892
PasI CCCWGGG 1 cut(s) 418
PceI AGGCCT 1 cut(s) 998
PcsI WCGNNNNNNNCGW 1 cut(s) 774
PctI GAATGC 1 cut(s) 808
PflFI GACNNNGTC 1 cut(s) 533
PkrI GCNGC 9 cut(s) 61, 64, 122, 298, 450, 557, 569, 720, 969
PluTI GGCGCC 2 cut(s) 363, 836
PpuMI RGGWCCY 1 cut(s) 823
Psp124BI GAGCTC 2 cut(s) 712, 993
Psp5II RGGWCCY 1 cut(s) 823
Psp6I CCWGG 1 cut(s) 417
PspFI CCCAGC 1 cut(s) 1004
PspGI CCWGG 1 cut(s) 417
PspN4I GGNNCC 9 cut(s) 151, 186, 187, 242, 361, 703, 825, 834, 983
PspOMI GGGCCC 1 cut(s) 184
PspPI GGNCC 7 cut(s) 184, 185, 240, 427, 701, 823, 1007
PspPPI RGGWCCY 1 cut(s) 823
PstI CTGCAG 1 cut(s) 972
PsuI RGATCY 3 cut(s) 157, 473, 507
PsyI GACNNNGTC 1 cut(s) 533
RsaI GTAC 5 cut(s) 230, 519, 812, 869, 893
RsaNI GTAC 5 cut(s) 229, 518, 811, 868, 892
SacI GAGCTC 2 cut(s) 712, 993
SalI GTCGAC 1 cut(s) 740
SaqAI TTAA 1 cut(s) 408
SatI GCNGC 9 cut(s) 60, 63, 121, 297, 449, 556, 568, 719, 968
Sau3AI GATC 6 cut(s) 157, 473, 507, 624, 750, 843
Sau96I GGNCC 7 cut(s) 184, 185, 240, 427, 701, 823, 1007
ScrFI CCNGG 5 cut(s) 391, 419, 650, 705, 817
SduI GDGCHC 6 cut(s) 188, 650, 712, 768, 986, 993
SfcI CTRYAG 1 cut(s) 968
SfoI GGCGCC 2 cut(s) 361, 834
SfuI TTCGAA 1 cut(s) 144
SgrDI CGTCGACG 1 cut(s) 740
SinI GGWCC 2 cut(s) 240, 823
SmlI CTYRAG 1 cut(s) 992
SmoI CTYRAG 1 cut(s) 992
SseBI AGGCCT 1 cut(s) 998
SspDI GGCGCC 2 cut(s) 359, 832
SspMI CTAG 1 cut(s) 161
SstI GAGCTC 2 cut(s) 712, 993
StuI AGGCCT 1 cut(s) 998
StyD4I CCNGG 5 cut(s) 389, 417, 648, 703, 815
StyI CCWWGG 1 cut(s) 594
TaaI ACNGT 1 cut(s) 334
TaiI ACGT 3 cut(s) 408, 537, 932
TaqI TCGA 3 cut(s) 144, 741, 788
TauI GCSGC 6 cut(s) 62, 65, 299, 558, 570, 721
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TscAI CASTG 4 cut(s) 337, 650, 760, 977
TseFI GTSAC 1 cut(s) 535
TseI GCWGC 3 cut(s) 120, 448, 967
Tsp45I GTSAC 1 cut(s) 535
TspDTI ATGAA 1 cut(s) 923
TspGWI ACGGA 5 cut(s) 64, 301, 367, 433, 854
TspRI CASTG 4 cut(s) 337, 650, 760, 977
Tth111I GACNNNGTC 1 cut(s) 533
VpaK11BI GGWCC 2 cut(s) 240, 823
XagI CCTNNNNNAGG 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 741
XspI CTAG 1 cut(s) 161
ZraI GACGTC 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.