Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0012778

Physical Location & Seq

Genomic Coordinates Forward (+)

19224107 .. 19224421

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0135800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGCCAGACCATGAGGATGATTTCAAGCCAGTCAGATATTTTGGGGAGTCTCGAGGCCATCTACATGTGATAATGTTCGAAAAGAACGCTGTTCAGTTTGATGTGTTGGAGATGGAGGAAGATTACACTGTATGGTACGTGAGGTACCATGTGAATCTTGAGTCCATTAGAGCTGCCTTCAGGGATGTGGCAGCTAATATCAACCACAGGTTTCTGGCTTCGGTCTTGAGTTTGGTTCGAGAAGAGAAGGAAGAGGACTCAAAAATAGTCCTCAACGTCTTCAGTATGGTTGTGGCCGGCCTACAACTTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

104

Amino Acids

12.23

Weight (kDa)

5.1

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17230
fragaria_vesca	FvH4_2g16740 FvH4_2g16740 FvH4_6g47290
prunus_persica	Prupe.8G179300_v2.0.a1
pyrus_communis	pycom05g13200 pycom10g11930
rosa_chinensis	RchiOBHm_Chr6g0280861
rosa_laevigata	RLG00000013025
rosa_multiflora	Rmu_sc0023262.1_g000001 Rmu_ssc0000024.1_g000004
rosa_roxburghii	Rroxscaffold_7G00187550
rosa_rugosa	Rorug06G0135800
rosa_samantha	Rh6AG248600 Rh6BG250300 Rh6CG251300 Rh6DG242900
rosa_wichuraiana	Rw6G021490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	144
AccB1I	GGYRCC	1 cut(s)	144
AcoI	YGGCCR	1 cut(s)	294
AcuI	CTGAAG	3 cut(s)	163, 265, 293
AfaI	GTAC	2 cut(s)	137, 146
AflIII	ACRYGT	1 cut(s)	64
AgsI	TTSAA	1 cut(s)	25
AluBI	AGCT	2 cut(s)	173, 194
AluI	AGCT	2 cut(s)	173, 194
Alw26I	GTCTC	1 cut(s)	54
Ama87I	CYCGRG	1 cut(s)	51
AoxI	GGCC	3 cut(s)	55, 294, 298
ApeKI	GCWGC	2 cut(s)	173, 191
Asp718I	GGTACC	1 cut(s)	144
AsuII	TTCGAA	1 cut(s)	78
AvaI	CYCGRG	1 cut(s)	51
BanI	GGYRCC	1 cut(s)	144
BbsI	GAAGAC	1 cut(s)	271
BbvI	GCAGC	2 cut(s)	160, 203
BccI	CCATC	2 cut(s)	66, 106
BcoDI	GTCTC	1 cut(s)	54
BisI	GCNGC	2 cut(s)	174, 192
BlsI	GCNGC	2 cut(s)	175, 193
BmeT110I	CYCGRG	1 cut(s)	51
BmiI	GGNNCC	1 cut(s)	146
BpiI	GAAGAC	1 cut(s)	271
Bpu14I	TTCGAA	1 cut(s)	78
BpuEI	CTTGAG	2 cut(s)	179, 247
BsaAI	YACGTR	1 cut(s)	139
Bse118I	RCCGGY	1 cut(s)	296
Bse1I	ACTGG	1 cut(s)	29
BseGI	GGATG	2 cut(s)	22, 190
BseNI	ACTGG	1 cut(s)	29
BseXI	GCAGC	2 cut(s)	160, 203
BshFI	GGCC	3 cut(s)	57, 296, 300
BshNI	GGYRCC	1 cut(s)	144
BsiHKCI	CYCGRG	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	297
BsmAI	GTCTC	1 cut(s)	54
BsnI	GGCC	3 cut(s)	57, 296, 300
BsoBI	CYCGRG	1 cut(s)	51
Bsp119I	TTCGAA	1 cut(s)	78
BspANI	GGCC	3 cut(s)	57, 296, 300
BspLI	GGNNCC	1 cut(s)	146
BspT104I	TTCGAA	1 cut(s)	78
BspT107I	GGYRCC	1 cut(s)	144
BsrFI	RCCGGY	1 cut(s)	296
BsrI	ACTGG	1 cut(s)	29
BssAI	RCCGGY	1 cut(s)	296
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	2 cut(s)	237, 246
BstBAI	YACGTR	1 cut(s)	139
BstBI	TTCGAA	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	298
BstF5I	GGATG	2 cut(s)	22, 190
BstMAI	GTCTC	1 cut(s)	54
BstNSI	RCATGY	1 cut(s)	68
BstV1I	GCAGC	2 cut(s)	160, 203
BstV2I	GAAGAC	1 cut(s)	271
BsuRI	GGCC	3 cut(s)	57, 296, 300
BtsCI	GGATG	2 cut(s)	22, 190
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	298
Cfr10I	RCCGGY	1 cut(s)	296
Csp6I	GTAC	2 cut(s)	136, 145
CviAII	CATG	3 cut(s)	11, 65, 149
CviJI	RGCY	7 cut(s)	28, 57, 173, 194, 218, 296, 300
CviKI_1	RGCY	7 cut(s)	28, 57, 173, 194, 218, 296, 300
CviQI	GTAC	2 cut(s)	136, 145
EaeI	YGGCCR	1 cut(s)	294
Eam1104I	CTCTTC	2 cut(s)	237, 246
EarI	CTCTTC	2 cut(s)	237, 246
Eco57I	CTGAAG	3 cut(s)	163, 265, 293
Eco88I	CYCGRG	1 cut(s)	51
FaeI	CATG	3 cut(s)	14, 68, 152
FaiI	YATR	5 cut(s)	12, 66, 133, 150, 287
FatI	CATG	3 cut(s)	10, 64, 148
Fnu4HI	GCNGC	2 cut(s)	174, 192
FokI	GGATG	2 cut(s)	29, 197
FseI	GGCCGGCC	1 cut(s)	300
Fsp4HI	GCNGC	2 cut(s)	174, 192
GluI	GCNGC	2 cut(s)	174, 192
HaeIII	GGCC	3 cut(s)	57, 296, 300
HapII	CCGG	1 cut(s)	297
Hin1II	CATG	3 cut(s)	14, 68, 152
HinfI	GANTC	4 cut(s)	47, 154, 161, 257
HpaII	CCGG	1 cut(s)	297
Hpy188I	TCNGA	1 cut(s)	35
Hpy188III	TCNNGA	4 cut(s)	51, 158, 226, 239
HpyAV	CCTTC	2 cut(s)	187, 241
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	2 cut(s)	138, 276
HpySE526I	ACGT	2 cut(s)	138, 276
Hsp92II	CATG	3 cut(s)	14, 68, 152
KpnI	GGTACC	1 cut(s)	148
KroI	GCCGGC	1 cut(s)	296
KroNI	GCCGGC	1 cut(s)	298
LpnPI	CCDG	6 cut(s)	18, 42, 166, 193, 200, 310
Lsp1109I	GCAGC	2 cut(s)	160, 203
MaeII	ACGT	2 cut(s)	138, 276
MboII	GAAGA	4 cut(s)	131, 254, 263, 271
MlyI	GAGTC	3 cut(s)	56, 170, 251
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	6 cut(s)	7, 47, 109, 135, 247, 281
MroNI	GCCGGC	1 cut(s)	296
MslI	CAYNNNNRTG	2 cut(s)	15, 63
MspI	CCGG	1 cut(s)	297
NaeI	GCCGGC	1 cut(s)	298
NgoMIV	GCCGGC	1 cut(s)	296
NlaIII	CATG	3 cut(s)	14, 68, 152
NlaIV	GGNNCC	1 cut(s)	146
NspI	RCATGY	1 cut(s)	68
NspV	TTCGAA	1 cut(s)	78
PaeR7I	CTCGAG	1 cut(s)	51
PciI	ACATGT	1 cut(s)	64
PdiI	GCCGGC	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	154
PkrI	GCNGC	2 cut(s)	175, 193
PleI	GAGTC	3 cut(s)	55, 169, 251
PpsI	GAGTC	3 cut(s)	55, 169, 251
Ppu21I	YACGTR	1 cut(s)	139
PscI	ACATGT	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	146
RigI	GGCCGGCC	1 cut(s)	300
RsaI	GTAC	2 cut(s)	137, 146
RsaNI	GTAC	2 cut(s)	136, 145
RseI	CAYNNNNRTG	2 cut(s)	15, 63
SatI	GCNGC	2 cut(s)	174, 192
SchI	GAGTC	3 cut(s)	56, 170, 251
SetI	ASST	6 cut(s)	141, 146, 175, 196, 212, 279
Sfr274I	CTCGAG	1 cut(s)	51
SfuI	TTCGAA	1 cut(s)	78
SlaI	CTCGAG	1 cut(s)	51
SmiMI	CAYNNNNRTG	2 cut(s)	15, 63
SmlI	CTYRAG	3 cut(s)	51, 158, 226
SmoI	CTYRAG	3 cut(s)	51, 158, 226
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	2 cut(s)	141, 279
TaqI	TCGA	3 cut(s)	52, 78, 238
TaqII	GACCGA	1 cut(s)	211
TfiI	GAWTC	1 cut(s)	154
TscAI	CASTG	1 cut(s)	133
TseI	GCWGC	2 cut(s)	173, 191
TspRI	CASTG	1 cut(s)	133
XceI	RCATGY	1 cut(s)	68
XhoI	CTCGAG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.