pycom05g13200

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0012778
Physical Location & Seq
Reverse (-)
16757086 .. 16757892
807 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g13200.1

Sequence Viewer

Length: 807 bp
ATGCCGCTCTCTAATCTCGCCTCCCTCCTCCTCCGCCTCCTCCTGCTCACGACCGCCACAATCTTCTCCCGCGCCAATGCCGCAGCCACTCCCTCTGTCCAAACCCTAAACACCCACGAGCTCTTCAACCCCAAGCTCCCTCCCCGCACCCTCTCTTCCAATAAGAAATTCGAGGGCTCCTCCAACCTCGTCGACCTCCGCTACCACATGGGCCCCGTCCTTTCCTCCTCCCCCATCAACATCTACCTCATCTGGTACGGCAAGTGGGCCCCGCCCCAAAAGCTCCTCATCACCGACTTCATCCACTCCATCTCCGCCGCTCCCTCCGCATCCCCCTCCGTCGCCGAGTGGTGGCGCACTGTCTCCCTGTACACCGACCAGACCGGCGCCAACGTCTCACGCTCCGTCGTCGTCGCCGGCCAGTACTCCGACATGAAGTACTCCCACGGGAATCACCTTACCCGCCTCTCCGTCCAGCAGGTCATCGCCTCCGCCGTCCGATCCGCCCCCTTCCCAGTCGATCACAAGCACGGTGTCTACCTAATCCTCACTTCCGAGGACGTCACCGTTCAGGACTTCTGTCGAGCCGTTTGTGGGTTCCATTATTTCACCTTCCCCTCCATGGTGGGCCACACTCTGCCATACGCCTGGATCGGAAACTCTGGCAAGCAGTGCCCGGAAGTCTGCGCCTACCCGTTCGCTATCCCCGGGTACATGGGTGGCGGCGGGCCCGGGGCCCTGTCCCCACCCAACAGGGACGTGGGCGTGGACGGGATGATCGAGCGTGATGGGGCACGAGCTCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phi_1

Protein Analysis

269

Amino Acids

29.16

Weight (kDa)

9.05

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 66 - 260 2.7e-67 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012778)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17230
fragaria_vesca FvH4_2g16740 FvH4_2g16740 FvH4_6g47290
prunus_persica Prupe.8G179300_v2.0.a1
pyrus_communis pycom05g13200 pycom10g11930
rosa_chinensis RchiOBHm_Chr6g0280861
rosa_laevigata RLG00000013025
rosa_multiflora Rmu_sc0023262.1_g000001 Rmu_ssc0000024.1_g000004
rosa_roxburghii Rroxscaffold_7G00187550
rosa_rugosa Rorug06G0135800
rosa_samantha Rh6AG248600 Rh6BG250300 Rh6CG251300 Rh6DG242900
rosa_wichuraiana Rw6G021490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 564
Acc36I ACCTGC 1 cut(s) 469
AccB1I GGYRCC 1 cut(s) 386
AccBSI CCGCTC 2 cut(s) 7, 320
AccI GTMKAC 2 cut(s) 192, 537
AccII CGCG 1 cut(s) 72
AclWI GGATC 2 cut(s) 495, 659
AcoI YGGCCR 1 cut(s) 418
AcsI RAATTY 1 cut(s) 167
AcyI GRCGYC 2 cut(s) 387, 561
AfaI GTAC 5 cut(s) 257, 371, 425, 440, 713
AfiI CCNNNNNNNGG 3 cut(s) 351, 594, 622
AgsI TTSAA 1 cut(s) 127
AjiI CACGTC 1 cut(s) 760
AjnI CCWGG 1 cut(s) 647
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AluBI AGCT 4 cut(s) 121, 136, 283, 800
AluI AGCT 4 cut(s) 121, 136, 283, 800
Alw21I GWGCWC 2 cut(s) 123, 802
Alw26I GTCTC 2 cut(s) 367, 400
AlwI GGATC 2 cut(s) 495, 659
Ama87I CYCGRG 2 cut(s) 707, 731
AoxI GGCC 6 cut(s) 211, 267, 418, 628, 728, 735
ApaI GGGCCC 4 cut(s) 215, 271, 732, 739
ApeKI GCWGC 1 cut(s) 83
ApoI RAATTY 1 cut(s) 167
AspLEI GCGC 4 cut(s) 74, 357, 389, 689
AspS9I GGNCC 9 cut(s) 211, 212, 267, 268, 628, 728, 729, 735, 736
AsuC2I CCSGG 5 cut(s) 677, 708, 709, 732, 733
AsuHPI GGTGA 4 cut(s) 283, 446, 556, 601
AvaI CYCGRG 2 cut(s) 707, 731
BaeGI GKGCMC 6 cut(s) 215, 271, 677, 732, 739, 796
BaeI ACNNNNGTAYC 2 cut(s) 703, 736
BanI GGYRCC 1 cut(s) 386
BanII GRGCYC 7 cut(s) 123, 179, 215, 271, 732, 739, 802
BauI CACGAG 2 cut(s) 116, 795
Bbv12I GWGCWC 2 cut(s) 123, 802
BbvI GCAGC 1 cut(s) 95
BccI CCATC 3 cut(s) 242, 317, 782
BceAI ACGGC 3 cut(s) 274, 479, 572
BciT130I CCWGG 1 cut(s) 649
BcnI CCSGG 5 cut(s) 677, 708, 709, 732, 733
BcoDI GTCTC 2 cut(s) 367, 400
BfoI RGCGCY 1 cut(s) 390
BfuAI ACCTGC 1 cut(s) 469
BisI GCNGC 5 cut(s) 5, 81, 84, 318, 724
BlsI GCNGC 5 cut(s) 6, 82, 85, 319, 725
BmcAI AGTACT 2 cut(s) 425, 440
Bme1390I CCNGG 6 cut(s) 649, 677, 708, 709, 732, 733
BmeT110I CYCGRG 2 cut(s) 707, 731
BmgBI CACGTC 1 cut(s) 760
BmgT120I GGNCC 9 cut(s) 211, 212, 267, 268, 628, 728, 729, 735, 736
BmrFI CCNGG 6 cut(s) 649, 677, 708, 709, 732, 733
BmrI ACTGGG 1 cut(s) 509
BmsI GCATC 1 cut(s) 338
BmuI ACTGGG 1 cut(s) 509
BoxI GACNNNNGTC 1 cut(s) 579
BplI GAGNNNNNCTC 2 cut(s) 164, 196
BpuMI CCSGG 5 cut(s) 677, 708, 709, 732, 733
BsaHI GRCGYC 2 cut(s) 387, 561
BsaJI CCNNGG 7 cut(s) 445, 555, 621, 706, 707, 731, 732
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 3 cut(s) 351, 594, 622
Bse118I RCCGGY 2 cut(s) 383, 416
Bse1I ACTGG 2 cut(s) 421, 515
BseBI CCWGG 1 cut(s) 649
BseDI CCNNGG 7 cut(s) 445, 555, 621, 706, 707, 731, 732
BseGI GGATG 3 cut(s) 300, 329, 780
BseLI CCNNNNNNNGG 3 cut(s) 351, 594, 622
BseNI ACTGG 2 cut(s) 421, 515
BseRI GAGGAG 6 cut(s) 17, 20, 29, 169, 217, 275
BseSI GKGCMC 6 cut(s) 215, 271, 677, 732, 739, 796
BseXI GCAGC 1 cut(s) 95
Bsh1236I CGCG 1 cut(s) 72
Bsh1285I CGRYCG 1 cut(s) 54
BshFI GGCC 6 cut(s) 213, 269, 420, 630, 730, 737
BshNI GGYRCC 1 cut(s) 386
BsiEI CGRYCG 1 cut(s) 54
BsiHKAI GWGCWC 2 cut(s) 123, 802
BsiHKCI CYCGRG 2 cut(s) 707, 731
BsiSI CCGG 5 cut(s) 384, 417, 677, 708, 732
BslFI GGGAC 2 cut(s) 727, 770
BslI CCNNNNNNNGG 3 cut(s) 351, 594, 622
BsmAI GTCTC 2 cut(s) 367, 400
BsmBI CGTCTC 1 cut(s) 400
BsmFI GGGAC 2 cut(s) 727, 770
BsnI GGCC 6 cut(s) 213, 269, 420, 630, 730, 737
BsoBI CYCGRG 2 cut(s) 707, 731
Bsp120I GGGCCC 4 cut(s) 211, 267, 728, 735
Bsp1286I GDGCHC 9 cut(s) 123, 179, 215, 271, 677, 732, 739, 796, 802
Bsp1407I TGTACA 1 cut(s) 369
Bsp143I GATC 4 cut(s) 500, 520, 651, 777
Bsp19I CCATGG 1 cut(s) 621
BspANI GGCC 6 cut(s) 213, 269, 420, 630, 730, 737
BspFNI CGCG 1 cut(s) 72
BspMI ACCTGC 1 cut(s) 469
BspPI GGATC 2 cut(s) 495, 659
BspQI GCTCTTC 1 cut(s) 128
BspT107I GGYRCC 1 cut(s) 386
BsrBI CCGCTC 2 cut(s) 7, 320
BsrFI RCCGGY 2 cut(s) 383, 416
BsrGI TGTACA 1 cut(s) 369
BsrI ACTGG 2 cut(s) 421, 515
BssAI RCCGGY 2 cut(s) 383, 416
BssECI CCNNGG 7 cut(s) 445, 555, 621, 706, 707, 731, 732
BssMI GATC 4 cut(s) 500, 520, 651, 777
BssNI GRCGYC 2 cut(s) 387, 561
BssSI CACGAG 2 cut(s) 116, 795
BssT1I CCWWGG 1 cut(s) 621
Bst2BI CACGAG 2 cut(s) 116, 795
Bst2UI CCWGG 1 cut(s) 649
Bst4CI ACNGT 3 cut(s) 361, 533, 568
Bst6I CTCTTC 2 cut(s) 128, 160
BstACI GRCGYC 2 cut(s) 387, 561
BstAPI GCANNNNNTGC 1 cut(s) 672
BstAUI TGTACA 1 cut(s) 369
BstC8I GCNNGC 4 cut(s) 418, 668, 728, 802
BstDSI CCRYGG 2 cut(s) 445, 621
BstF5I GGATG 3 cut(s) 300, 329, 780
BstFNI CGCG 1 cut(s) 72
BstH2I RGCGCY 1 cut(s) 390
BstHHI GCGC 4 cut(s) 74, 357, 389, 689
BstKTI GATC 4 cut(s) 503, 523, 654, 780
BstMAI GTCTC 2 cut(s) 367, 400
BstMBI GATC 4 cut(s) 500, 520, 651, 777
BstMCI CGRYCG 1 cut(s) 54
BstMWI GCNNNNNNNGC 4 cut(s) 80, 280, 326, 672
BstNI CCWGG 1 cut(s) 649
BstPAI GACNNNNGTC 1 cut(s) 579
BstSCI CCNGG 6 cut(s) 647, 675, 706, 707, 730, 731
BstSLI GKGCMC 6 cut(s) 215, 271, 677, 732, 739, 796
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 95
BstXI CCANNNNNNTGG 1 cut(s) 648
BsuRI GGCC 6 cut(s) 213, 269, 420, 630, 730, 737
BtgI CCRYGG 2 cut(s) 445, 621
BtgZI GCGATG 1 cut(s) 469
BtrI CACGTC 1 cut(s) 760
BtsCI GGATG 3 cut(s) 300, 329, 780
BtsI GCAGTG 1 cut(s) 677
BtsIMutI CAGTG 2 cut(s) 357, 677
BveI ACCTGC 1 cut(s) 469
Cac8I GCNNGC 4 cut(s) 418, 668, 728, 802
CfoI GCGC 4 cut(s) 74, 357, 389, 689
Cfr10I RCCGGY 2 cut(s) 383, 416
Cfr13I GGNCC 9 cut(s) 211, 212, 267, 268, 628, 728, 729, 735, 736
Cfr9I CCCGGG 2 cut(s) 707, 731
Csp6I GTAC 5 cut(s) 256, 370, 424, 439, 712
CviAII CATG 4 cut(s) 208, 433, 622, 715
CviQI GTAC 5 cut(s) 256, 370, 424, 439, 712
DinI GGCGCC 1 cut(s) 388
DpnI GATC 4 cut(s) 502, 522, 653, 779
DpnII GATC 4 cut(s) 500, 520, 651, 777
EaeI YGGCCR 1 cut(s) 418
Eam1104I CTCTTC 2 cut(s) 128, 160
EarI CTCTTC 2 cut(s) 128, 160
EciI GGCGGA 4 cut(s) 23, 304, 481, 493
Ecl136II GAGCTC 2 cut(s) 121, 800
Eco130I CCWWGG 1 cut(s) 621
Eco24I GRGCYC 7 cut(s) 123, 179, 215, 271, 732, 739, 802
Eco53kI GAGCTC 2 cut(s) 121, 800
Eco88I CYCGRG 2 cut(s) 707, 731
EcoICRI GAGCTC 2 cut(s) 121, 800
EcoO109I RGGNCCY 4 cut(s) 212, 268, 735, 736
EcoRII CCWGG 1 cut(s) 647
EcoT14I CCWWGG 1 cut(s) 621
EcoT38I GRGCYC 7 cut(s) 123, 179, 215, 271, 732, 739, 802
EgeI GGCGCC 1 cut(s) 388
EheI GGCGCC 1 cut(s) 388
ErhI CCWWGG 1 cut(s) 621
Esp3I CGTCTC 1 cut(s) 400
FaeI CATG 4 cut(s) 211, 436, 625, 718
FaiI YATR 5 cut(s) 209, 434, 623, 643, 716
FaqI GGGAC 2 cut(s) 727, 770
FatI CATG 4 cut(s) 207, 432, 621, 714
FauI CCCGC 5 cut(s) 77, 152, 279, 470, 719
FblI GTMKAC 2 cut(s) 192, 537
Fnu4HI GCNGC 5 cut(s) 5, 81, 84, 318, 724
FokI GGATG 3 cut(s) 287, 316, 787
FriOI GRGCYC 7 cut(s) 123, 179, 215, 271, 732, 739, 802
Fsp4HI GCNGC 5 cut(s) 5, 81, 84, 318, 724
GlaI GCGC 4 cut(s) 73, 356, 388, 688
GluI GCNGC 5 cut(s) 5, 81, 84, 318, 724
HaeII RGCGCY 1 cut(s) 390
HaeIII GGCC 6 cut(s) 213, 269, 420, 630, 730, 737
HapII CCGG 5 cut(s) 384, 417, 677, 708, 732
HhaI GCGC 4 cut(s) 74, 357, 389, 689
Hin1I GRCGYC 2 cut(s) 387, 561
Hin1II CATG 4 cut(s) 211, 436, 625, 718
Hin6I GCGC 4 cut(s) 72, 355, 387, 687
HinP1I GCGC 4 cut(s) 72, 355, 387, 687
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 1 cut(s) 451
HpaII CCGG 5 cut(s) 384, 417, 677, 708, 732
HphI GGTGA 4 cut(s) 283, 446, 556, 601
Hpy166II GTNNAC 4 cut(s) 193, 372, 538, 769
Hpy188I TCNGA 4 cut(s) 430, 500, 556, 656
Hpy188III TCNNGA 2 cut(s) 49, 572
Hpy8I GTNNAC 4 cut(s) 193, 372, 538, 769
Hpy99I CGWCG 5 cut(s) 194, 344, 410, 413, 416
HpyAV CCTTC 2 cut(s) 520, 622
HpyCH4III ACNGT 3 cut(s) 361, 533, 568
HpyCH4IV ACGT 3 cut(s) 393, 561, 759
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 280, 326, 672
HpySE526I ACGT 3 cut(s) 393, 561, 759
Hsp92I GRCGYC 2 cut(s) 387, 561
Hsp92II CATG 4 cut(s) 211, 436, 625, 718
HspAI GCGC 4 cut(s) 72, 355, 387, 687
KasI GGCGCC 1 cut(s) 386
KroI GCCGGC 1 cut(s) 416
KroNI GCCGGC 1 cut(s) 418
Kzo9I GATC 4 cut(s) 500, 520, 651, 777
LguI GCTCTTC 1 cut(s) 128
LmnI GCTCC 5 cut(s) 141, 182, 288, 325, 407
Lsp1109I GCAGC 1 cut(s) 95
LweI GCATC 1 cut(s) 338
MaeII ACGT 3 cut(s) 393, 561, 759
MaeIII GTNAC 1 cut(s) 562
MalI GATC 4 cut(s) 502, 522, 653, 779
MbiI CCGCTC 2 cut(s) 7, 320
MboI GATC 4 cut(s) 500, 520, 651, 777
MboII GAAGA 3 cut(s) 55, 115, 147
MhlI GDGCHC 9 cut(s) 123, 179, 215, 271, 677, 732, 739, 796, 802
MluCI AATT 1 cut(s) 167
Mly113I GGCGCC 1 cut(s) 387
MmeI TCCRAC 2 cut(s) 207, 453
MroNI GCCGGC 1 cut(s) 416
MspI CCGG 5 cut(s) 384, 417, 677, 708, 732
MspR9I CCNGG 6 cut(s) 649, 677, 708, 709, 732, 733
MvaI CCWGG 1 cut(s) 649
MvnI CGCG 1 cut(s) 72
MwoI GCNNNNNNNGC 4 cut(s) 80, 280, 326, 672
NaeI GCCGGC 1 cut(s) 418
NarI GGCGCC 1 cut(s) 387
NciI CCSGG 5 cut(s) 677, 708, 709, 732, 733
NcoI CCATGG 1 cut(s) 621
NdeII GATC 4 cut(s) 500, 520, 651, 777
NgoMIV GCCGGC 1 cut(s) 416
NlaIII CATG 4 cut(s) 211, 436, 625, 718
NmeAIII GCCGAG 1 cut(s) 370
NmuCI GTSAC 1 cut(s) 562
PciSI GCTCTTC 1 cut(s) 128
PcsI WCGNNNNNNNCGW 2 cut(s) 492, 777
PdiI GCCGGC 1 cut(s) 418
PfeI GAWTC 1 cut(s) 451
PkrI GCNGC 5 cut(s) 6, 82, 85, 319, 725
PluTI GGCGCC 1 cut(s) 390
PshAI GACNNNNGTC 1 cut(s) 579
Psp124BI GAGCTC 2 cut(s) 123, 802
Psp6I CCWGG 1 cut(s) 647
PspGI CCWGG 1 cut(s) 647
PspOMI GGGCCC 4 cut(s) 211, 267, 728, 735
PspPI GGNCC 9 cut(s) 211, 212, 267, 268, 628, 728, 729, 735, 736
RsaI GTAC 5 cut(s) 257, 371, 425, 440, 713
RsaNI GTAC 5 cut(s) 256, 370, 424, 439, 712
SacI GAGCTC 2 cut(s) 123, 802
SalI GTCGAC 1 cut(s) 191
SapI GCTCTTC 1 cut(s) 128
SatI GCNGC 5 cut(s) 5, 81, 84, 318, 724
Sau3AI GATC 4 cut(s) 500, 520, 651, 777
Sau96I GGNCC 9 cut(s) 211, 212, 267, 268, 628, 728, 729, 735, 736
ScaI AGTACT 2 cut(s) 425, 440
ScrFI CCNGG 6 cut(s) 649, 677, 708, 709, 732, 733
SduI GDGCHC 9 cut(s) 123, 179, 215, 271, 677, 732, 739, 796, 802
SfaNI GCATC 1 cut(s) 338
SfoI GGCGCC 1 cut(s) 388
SmaI CCCGGG 2 cut(s) 709, 733
Sse9I AATT 1 cut(s) 167
SspDI GGCGCC 1 cut(s) 386
SstI GAGCTC 2 cut(s) 123, 802
StyD4I CCNGG 6 cut(s) 647, 675, 706, 707, 730, 731
StyI CCWWGG 1 cut(s) 621
TaaI ACNGT 3 cut(s) 361, 533, 568
TaiI ACGT 3 cut(s) 396, 564, 762
TaqI TCGA 5 cut(s) 171, 192, 519, 583, 780
TasI AATT 1 cut(s) 167
TatI WGTACW 3 cut(s) 369, 423, 438
TauI GCSGC 4 cut(s) 7, 83, 320, 726
TfiI GAWTC 1 cut(s) 451
TscAI CASTG 2 cut(s) 364, 677
TseFI GTSAC 1 cut(s) 562
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 562
TspDTI ATGAA 2 cut(s) 289, 449
TspGWI ACGGA 3 cut(s) 328, 394, 460
TspMI CCCGGG 2 cut(s) 707, 731
TspRI CASTG 2 cut(s) 364, 677
XapI RAATTY 1 cut(s) 167
XcmI CCANNNNNNNNNTGG 1 cut(s) 757
XmaI CCCGGG 2 cut(s) 707, 731
XmiI GTMKAC 2 cut(s) 192, 537
ZraI GACGTC 1 cut(s) 562
ZrmI AGTACT 2 cut(s) 425, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.