RchiOBHm_Chr6g0280861

Phosphate-induced protein 1 conserved region

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
44268359 .. 44269949
1591 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25188

Sequence Viewer

Length: 1053 bp
ATGTCGTCACTCTCCCTCCTTCTCCTCCTCCTCCCCTTCTTCCTCATCCAGTCCTCCATAGCATCAACAACAACAACACCTTCAGTTCAAACCCTAAACACAAAGCCAACCATCTTTAACCCCAAGCTCCCTCCTCGAACCCTCTCCTCCTCCAAGAAGTTCGAGGGCTCCTCAGATCTGGTGCAGCTCCGCTACCACATGGGTCCCGTCCTCTCCTCCACCCCTATTAACATCTACCTCATCTGGTACGGCCGTTGGGCCTTACCCCAGAAGCTCCTCATCAAGGACTTCCTCCACTCCATCTCCACCACCGACCTCCGCGCCGCTCCGTCGCCCTCCGTCGCCGAGTGGTGGCGCACTGTCTCGCTCTACACCGACCAGACCGGCGCCAACGTCTCCCGCTCCGTCGTCGTGGCGGGGGAGCACGCTGACCTCAAGTACTCCCACGGCAAGCAACTCACCCGCCTCTCCGTCCAGCAGGTCATCGCCAACGCCGTCAGATCTGCTCCGTTCCCGGTCGACCACAAGAACGGGATCTACCTCATCCTGACCTCCGAGGACGTCGCCATGCAGGACTTCTGCCGCGCCGTCTGCGGCTTCCACTACTTCACATTCCCCTCCATGGTGGGCTACACGCTCCCCTACGCTTGGATCGGAAACTCCGGCAAGCAGTGCCCGGAGGTCTGCGCCTACCCGTTTGCTCTTCCCGGCTACATGGCCGGAGGCGGCCCCGGAGCTCTGTCGCCGCCGAACAAGGACGTCGGCGTCGACGGTATGATCAGTGTGATCGGCCACGAGCTGGCCGAGCTGTCGTCGAACCCTCTTGTCAATGCCTGGTACGCCGGCGAGGACCCGACGGCGCCGACTGAGATCGGGGACTTGTGTGAGGGGTTGTACGGAACAGGAGGCGGCGGTGGGTACATTGGGCAGGTGATGAGGGACAGAGAAGGGAGGACGTTCAATGTGAATGGGAGGAAGGGGAGGAAGTTCTTGGTGCAGTGGCTTTGGAGCCCTGAACTGAAGGCCTGTGCTGGGCCTAATGCTATGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

350

Amino Acids

38.07

Weight (kDa)

8.14

Isoelectric Point (pI)

45.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 63 - 345 3.2e-102 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012778)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 919
AasI GACNNNNNNGTC 1 cut(s) 764
AatII GACGTC 2 cut(s) 564, 762
Acc36I ACCTGC 2 cut(s) 469, 919
AccB1I GGYRCC 2 cut(s) 386, 859
AccB7I CCANNNNNTGG 1 cut(s) 799
AccBSI CCGCTC 2 cut(s) 326, 402
AccI GTMKAC 2 cut(s) 519, 768
AccII CGCG 2 cut(s) 321, 585
AclWI GGATC 2 cut(s) 542, 659
AcoI YGGCCR 4 cut(s) 250, 717, 790, 801
AcuI CTGAAG 2 cut(s) 66, 1040
AcyI GRCGYC 5 cut(s) 387, 561, 759, 765, 860
AfaI GTAC 5 cut(s) 248, 440, 839, 896, 920
AfiI CCNNNNNNNGG 6 cut(s) 283, 351, 622, 648, 799, 1032
AgsI TTSAA 2 cut(s) 89, 961
AjnI CCWGG 1 cut(s) 833
AluBI AGCT 6 cut(s) 127, 187, 274, 737, 799, 808
AluI AGCT 6 cut(s) 127, 187, 274, 737, 799, 808
Alw21I GWGCWC 2 cut(s) 426, 739
Alw26I GTCTC 2 cut(s) 367, 400
AlwI GGATC 2 cut(s) 542, 659
AoxI GGCC 8 cut(s) 250, 258, 717, 727, 790, 801, 1023, 1034
ApeKI GCWGC 1 cut(s) 184
AspLEI GCGC 6 cut(s) 323, 357, 389, 587, 689, 862
AspS9I GGNCC 5 cut(s) 203, 258, 728, 850, 1034
AsuC2I CCSGG 4 cut(s) 515, 677, 708, 732
AsuHPI GGTGA 2 cut(s) 451, 943
AvaII GGWCC 2 cut(s) 203, 850
BaeGI GKGCMC 1 cut(s) 677
BaeI ACNNNNGTAYC 2 cut(s) 238, 271
BanI GGYRCC 2 cut(s) 386, 859
BanII GRGCYC 3 cut(s) 170, 739, 1013
BauI CACGAG 1 cut(s) 794
Bbv12I GWGCWC 2 cut(s) 426, 739
BbvI GCAGC 1 cut(s) 196
BccI CCATC 2 cut(s) 119, 308
BceAI ACGGC 6 cut(s) 237, 265, 463, 479, 572, 873
BciT130I CCWGG 1 cut(s) 835
BclI TGATCA 1 cut(s) 777
BcnI CCSGG 4 cut(s) 515, 677, 708, 732
BcoDI GTCTC 2 cut(s) 367, 400
BfoI RGCGCY 2 cut(s) 390, 863
BfuAI ACCTGC 2 cut(s) 469, 919
BglII AGATCT 2 cut(s) 175, 500
BisI GCNGC 7 cut(s) 185, 324, 583, 595, 727, 746, 910
BlsI GCNGC 7 cut(s) 186, 325, 584, 596, 728, 747, 911
BmcAI AGTACT 1 cut(s) 440
Bme1390I CCNGG 5 cut(s) 515, 677, 708, 732, 835
Bme18I GGWCC 2 cut(s) 203, 850
BmgT120I GGNCC 5 cut(s) 203, 258, 728, 850, 1034
BmiI GGNNCC 8 cut(s) 169, 204, 205, 388, 730, 852, 861, 1010
BmrFI CCNGG 5 cut(s) 515, 677, 708, 732, 835
BmsI GCATC 1 cut(s) 71
BplI GAGNNNNNCTC 2 cut(s) 155, 187
BpuEI CTTGAG 1 cut(s) 419
BpuMI CCSGG 4 cut(s) 515, 677, 708, 732
BsaHI GRCGYC 5 cut(s) 387, 561, 759, 765, 860
BsaJI CCNNGG 4 cut(s) 445, 555, 621, 730
BsaXI ACNNNNNCTCC 3 cut(s) 30, 287, 317
Bsc4I CCNNNNNNNGG 6 cut(s) 283, 351, 622, 648, 799, 1032
Bse118I RCCGGY 2 cut(s) 383, 842
Bse1I ACTGG 1 cut(s) 49
BseBI CCWGG 1 cut(s) 835
BseDI CCNNGG 4 cut(s) 445, 555, 621, 730
BseGI GGATG 2 cut(s) 45, 543
BseLI CCNNNNNNNGG 6 cut(s) 283, 351, 622, 648, 799, 1032
BseMII CTCAG 2 cut(s) 186, 858
BseNI ACTGG 1 cut(s) 49
BseRI GAGGAG 9 cut(s) 14, 17, 20, 123, 136, 139, 160, 205, 266
BseSI GKGCMC 1 cut(s) 677
BseX3I CGGCCG 1 cut(s) 250
BseXI GCAGC 1 cut(s) 196
BseYI CCCAGC 1 cut(s) 1031
BsgI GTGCAG 2 cut(s) 203, 1016
Bsh1236I CGCG 2 cut(s) 321, 585
Bsh1285I CGRYCG 2 cut(s) 253, 519
BshFI GGCC 8 cut(s) 252, 260, 719, 729, 792, 803, 1025, 1036
BshNI GGYRCC 2 cut(s) 386, 859
BsiEI CGRYCG 2 cut(s) 253, 519
BsiHKAI GWGCWC 2 cut(s) 426, 739
BsiSI CCGG 8 cut(s) 384, 515, 663, 677, 708, 720, 732, 843
BslFI GGGAC 3 cut(s) 189, 890, 953
BslI CCNNNNNNNGG 6 cut(s) 283, 351, 622, 648, 799, 1032
BsmAI GTCTC 2 cut(s) 367, 400
BsmBI CGTCTC 1 cut(s) 400
BsmFI GGGAC 3 cut(s) 189, 890, 953
BsnI GGCC 8 cut(s) 252, 260, 719, 729, 792, 803, 1025, 1036
Bsp1286I GDGCHC 5 cut(s) 170, 426, 677, 739, 1013
Bsp143I GATC 7 cut(s) 175, 500, 534, 651, 777, 786, 870
Bsp19I CCATGG 1 cut(s) 621
BspANI GGCC 8 cut(s) 252, 260, 719, 729, 792, 803, 1025, 1036
BspCNI CTCAG 2 cut(s) 185, 859
BspFNI CGCG 2 cut(s) 321, 585
BspLI GGNNCC 8 cut(s) 169, 204, 205, 388, 730, 852, 861, 1010
BspMI ACCTGC 2 cut(s) 469, 919
BspPI GGATC 2 cut(s) 542, 659
BspQI GCTCTTC 1 cut(s) 708
BspT107I GGYRCC 2 cut(s) 386, 859
BsrBI CCGCTC 2 cut(s) 326, 402
BsrFI RCCGGY 2 cut(s) 383, 842
BsrI ACTGG 1 cut(s) 49
BssAI RCCGGY 2 cut(s) 383, 842
BssECI CCNNGG 4 cut(s) 445, 555, 621, 730
BssMI GATC 7 cut(s) 175, 500, 534, 651, 777, 786, 870
BssNI GRCGYC 5 cut(s) 387, 561, 759, 765, 860
BssSI CACGAG 1 cut(s) 794
BssT1I CCWWGG 1 cut(s) 621
Bst2BI CACGAG 1 cut(s) 794
Bst2UI CCWGG 1 cut(s) 835
Bst4CI ACNGT 2 cut(s) 361, 773
Bst6I CTCTTC 1 cut(s) 708
BstACI GRCGYC 5 cut(s) 387, 561, 759, 765, 860
BstAPI GCANNNNNTGC 1 cut(s) 672
BstC8I GCNNGC 5 cut(s) 426, 452, 668, 801, 844
BstDEI CTNAG 2 cut(s) 172, 867
BstDSI CCRYGG 2 cut(s) 445, 621
BstENI CCTNNNNNAGG 1 cut(s) 281
BstF5I GGATG 2 cut(s) 45, 543
BstFNI CGCG 2 cut(s) 321, 585
BstH2I RGCGCY 2 cut(s) 390, 863
BstHHI GCGC 6 cut(s) 323, 357, 389, 587, 689, 862
BstKTI GATC 7 cut(s) 178, 503, 537, 654, 780, 789, 873
BstMAI GTCTC 2 cut(s) 367, 400
BstMBI GATC 7 cut(s) 175, 500, 534, 651, 777, 786, 870
BstMCI CGRYCG 2 cut(s) 253, 519
BstMWI GCNNNNNNNGC 4 cut(s) 591, 672, 805, 839
BstNI CCWGG 1 cut(s) 835
BstSCI CCNGG 5 cut(s) 513, 675, 706, 730, 833
BstSLI GKGCMC 1 cut(s) 677
BstUI CGCG 2 cut(s) 321, 585
BstV1I GCAGC 1 cut(s) 196
BstX2I RGATCY 3 cut(s) 175, 500, 534
BstYI RGATCY 3 cut(s) 175, 500, 534
BstZI CGGCCG 1 cut(s) 250
BsuRI GGCC 8 cut(s) 252, 260, 719, 729, 792, 803, 1025, 1036
BtgI CCRYGG 2 cut(s) 445, 621
BtgZI GCGATG 1 cut(s) 469
BtsCI GGATG 2 cut(s) 45, 543
BtsI GCAGTG 2 cut(s) 677, 1004
BtsIMutI CAGTG 4 cut(s) 357, 677, 787, 1004
BveI ACCTGC 2 cut(s) 469, 919
Cac8I GCNNGC 5 cut(s) 426, 452, 668, 801, 844
CfoI GCGC 6 cut(s) 323, 357, 389, 587, 689, 862
Cfr10I RCCGGY 2 cut(s) 383, 842
Cfr13I GGNCC 5 cut(s) 203, 258, 728, 850, 1034
CseI GACGC 1 cut(s) 754
Csp6I GTAC 5 cut(s) 247, 439, 838, 895, 919
CviAII CATG 4 cut(s) 199, 568, 622, 715
CviQI GTAC 5 cut(s) 247, 439, 838, 895, 919
DdeI CTNAG 2 cut(s) 172, 867
DinI GGCGCC 2 cut(s) 388, 861
DpnI GATC 7 cut(s) 177, 502, 536, 653, 779, 788, 872
DpnII GATC 7 cut(s) 175, 500, 534, 651, 777, 786, 870
DrdI GACNNNNNNGTC 1 cut(s) 764
DseDI GACNNNNNNGTC 1 cut(s) 764
EaeI YGGCCR 4 cut(s) 250, 717, 790, 801
EagI CGGCCG 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 708
EarI CTCTTC 1 cut(s) 708
Ecl136II GAGCTC 1 cut(s) 737
EclXI CGGCCG 1 cut(s) 250
Eco130I CCWWGG 1 cut(s) 621
Eco147I AGGCCT 1 cut(s) 1025
Eco24I GRGCYC 3 cut(s) 170, 739, 1013
Eco47I GGWCC 2 cut(s) 203, 850
Eco52I CGGCCG 1 cut(s) 250
Eco53kI GAGCTC 1 cut(s) 737
Eco57I CTGAAG 2 cut(s) 66, 1040
EcoICRI GAGCTC 1 cut(s) 737
EcoNI CCTNNNNNAGG 1 cut(s) 281
EcoO109I RGGNCCY 2 cut(s) 203, 850
EcoRII CCWGG 1 cut(s) 833
EcoT14I CCWWGG 1 cut(s) 621
EcoT38I GRGCYC 3 cut(s) 170, 739, 1013
EgeI GGCGCC 2 cut(s) 388, 861
EheI GGCGCC 2 cut(s) 388, 861
ErhI CCWWGG 1 cut(s) 621
Esp3I CGTCTC 1 cut(s) 400
FaeI CATG 4 cut(s) 202, 571, 625, 718
FaiI YATR 7 cut(s) 59, 200, 569, 623, 716, 776, 1046
FaqI GGGAC 3 cut(s) 189, 890, 953
FatI CATG 4 cut(s) 198, 567, 621, 714
FauI CCCGC 3 cut(s) 407, 409, 470
FbaI TGATCA 1 cut(s) 777
FblI GTMKAC 2 cut(s) 519, 768
Fnu4HI GCNGC 7 cut(s) 185, 324, 583, 595, 727, 746, 910
FokI GGATG 2 cut(s) 32, 530
FriOI GRGCYC 3 cut(s) 170, 739, 1013
Fsp4HI GCNGC 7 cut(s) 185, 324, 583, 595, 727, 746, 910
GlaI GCGC 6 cut(s) 322, 356, 388, 586, 688, 861
GluI GCNGC 7 cut(s) 185, 324, 583, 595, 727, 746, 910
GsaI CCCAGC 1 cut(s) 1035
HaeII RGCGCY 2 cut(s) 390, 863
HaeIII GGCC 8 cut(s) 252, 260, 719, 729, 792, 803, 1025, 1036
HapII CCGG 8 cut(s) 384, 515, 663, 677, 708, 720, 732, 843
HgaI GACGC 1 cut(s) 754
HhaI GCGC 6 cut(s) 323, 357, 389, 587, 689, 862
Hin1I GRCGYC 5 cut(s) 387, 561, 759, 765, 860
Hin1II CATG 4 cut(s) 202, 571, 625, 718
Hin6I GCGC 6 cut(s) 321, 355, 387, 585, 687, 860
HinP1I GCGC 6 cut(s) 321, 355, 387, 585, 687, 860
HincII GTYRAC 2 cut(s) 520, 769
HindII GTYRAC 2 cut(s) 520, 769
HpaII CCGG 8 cut(s) 384, 515, 663, 677, 708, 720, 732, 843
HphI GGTGA 2 cut(s) 451, 943
Hpy166II GTNNAC 2 cut(s) 520, 769
Hpy188I TCNGA 4 cut(s) 175, 500, 556, 656
Hpy188III TCNNGA 1 cut(s) 547
Hpy8I GTNNAC 2 cut(s) 520, 769
HpyAV CCTTC 6 cut(s) 29, 46, 90, 941, 970, 1015
HpyCH4III ACNGT 2 cut(s) 361, 773
HpyCH4IV ACGT 4 cut(s) 393, 561, 759, 956
HpyCH4V TGCA 3 cut(s) 184, 571, 997
HpyF10VI GCNNNNNNNGC 4 cut(s) 591, 672, 805, 839
HpyF3I CTNAG 2 cut(s) 172, 867
HpySE526I ACGT 4 cut(s) 393, 561, 759, 956
Hsp92I GRCGYC 5 cut(s) 387, 561, 759, 765, 860
Hsp92II CATG 4 cut(s) 202, 571, 625, 718
HspAI GCGC 6 cut(s) 321, 355, 387, 585, 687, 860
KasI GGCGCC 2 cut(s) 386, 859
KflI GGGWCCC 1 cut(s) 203
KroI GCCGGC 1 cut(s) 842
KroNI GCCGGC 1 cut(s) 844
Ksp22I TGATCA 1 cut(s) 777
Kzo9I GATC 7 cut(s) 175, 500, 534, 651, 777, 786, 870
LguI GCTCTTC 1 cut(s) 708
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 1 cut(s) 71
MaeII ACGT 4 cut(s) 393, 561, 759, 956
MaeIII GTNAC 1 cut(s) 6
MalI GATC 7 cut(s) 177, 502, 536, 653, 779, 788, 872
MbiI CCGCTC 2 cut(s) 326, 402
MboI GATC 7 cut(s) 175, 500, 534, 651, 777, 786, 870
MboII GAAGA 2 cut(s) 31, 695
MflI RGATCY 3 cut(s) 175, 500, 534
MhlI GDGCHC 5 cut(s) 170, 426, 677, 739, 1013
Mly113I GGCGCC 2 cut(s) 387, 860
MreI CGCCGGCG 1 cut(s) 842
MroNI GCCGGC 1 cut(s) 842
MseI TTAA 3 cut(s) 117, 228, 1051
MspI CCGG 8 cut(s) 384, 515, 663, 677, 708, 720, 732, 843
MspR9I CCNGG 5 cut(s) 515, 677, 708, 732, 835
MvaI CCWGG 1 cut(s) 835
MvnI CGCG 2 cut(s) 321, 585
MwoI GCNNNNNNNGC 4 cut(s) 591, 672, 805, 839
NaeI GCCGGC 1 cut(s) 844
NarI GGCGCC 2 cut(s) 387, 860
NciI CCSGG 4 cut(s) 515, 677, 708, 732
NcoI CCATGG 1 cut(s) 621
NdeII GATC 7 cut(s) 175, 500, 534, 651, 777, 786, 870
NgoMIV GCCGGC 1 cut(s) 842
NlaIII CATG 4 cut(s) 202, 571, 625, 718
NlaIV GGNNCC 8 cut(s) 169, 204, 205, 388, 730, 852, 861, 1010
NmeAIII GCCGAG 2 cut(s) 370, 829
NmuCI GTSAC 1 cut(s) 6
PaqCI CACCTGC 1 cut(s) 919
PceI AGGCCT 1 cut(s) 1025
PciSI GCTCTTC 1 cut(s) 708
PcsI WCGNNNNNNNCGW 3 cut(s) 492, 765, 801
PdiI GCCGGC 1 cut(s) 844
PflMI CCANNNNNTGG 1 cut(s) 799
PkrI GCNGC 7 cut(s) 186, 325, 584, 596, 728, 747, 911
PluTI GGCGCC 2 cut(s) 390, 863
PpuMI RGGWCCY 2 cut(s) 203, 850
Psp124BI GAGCTC 1 cut(s) 739
Psp5II RGGWCCY 2 cut(s) 203, 850
Psp6I CCWGG 1 cut(s) 833
PspFI CCCAGC 1 cut(s) 1031
PspGI CCWGG 1 cut(s) 833
PspN4I GGNNCC 8 cut(s) 169, 204, 205, 388, 730, 852, 861, 1010
PspPI GGNCC 5 cut(s) 203, 258, 728, 850, 1034
PspPPI RGGWCCY 2 cut(s) 203, 850
PsrI GAACNNNNNNTAC 2 cut(s) 521, 553
PsuI RGATCY 3 cut(s) 175, 500, 534
RsaI GTAC 5 cut(s) 248, 440, 839, 896, 920
RsaNI GTAC 5 cut(s) 247, 439, 838, 895, 919
SacI GAGCTC 1 cut(s) 739
SalI GTCGAC 2 cut(s) 518, 767
SapI GCTCTTC 1 cut(s) 708
SaqAI TTAA 3 cut(s) 117, 228, 1051
SatI GCNGC 7 cut(s) 185, 324, 583, 595, 727, 746, 910
Sau3AI GATC 7 cut(s) 175, 500, 534, 651, 777, 786, 870
Sau96I GGNCC 5 cut(s) 203, 258, 728, 850, 1034
ScaI AGTACT 1 cut(s) 440
ScrFI CCNGG 5 cut(s) 515, 677, 708, 732, 835
SduI GDGCHC 5 cut(s) 170, 426, 677, 739, 1013
SfaNI GCATC 1 cut(s) 71
SfoI GGCGCC 2 cut(s) 388, 861
SgrAI CRCCGGYG 1 cut(s) 842
SgrDI CGTCGACG 1 cut(s) 767
SinI GGWCC 2 cut(s) 203, 850
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
SseBI AGGCCT 1 cut(s) 1025
SspDI GGCGCC 2 cut(s) 386, 859
SstI GAGCTC 1 cut(s) 739
StuI AGGCCT 1 cut(s) 1025
StyD4I CCNGG 5 cut(s) 513, 675, 706, 730, 833
StyI CCWWGG 1 cut(s) 621
TaaI ACNGT 2 cut(s) 361, 773
TaiI ACGT 4 cut(s) 396, 564, 762, 959
TaqI TCGA 5 cut(s) 136, 162, 519, 768, 815
TatI WGTACW 1 cut(s) 438
TauI GCSGC 6 cut(s) 326, 585, 597, 729, 748, 912
Tru1I TTAA 3 cut(s) 117, 228, 1051
Tru9I TTAA 3 cut(s) 117, 228, 1051
TscAI CASTG 4 cut(s) 364, 677, 787, 1004
TseFI GTSAC 1 cut(s) 6
TseI GCWGC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 6
TspGWI ACGGA 6 cut(s) 318, 328, 394, 460, 498, 912
TspRI CASTG 4 cut(s) 364, 677, 787, 1004
Van91I CCANNNNNTGG 1 cut(s) 799
VpaK11BI GGWCC 2 cut(s) 203, 850
XagI CCTNNNNNAGG 1 cut(s) 281
XmiI GTMKAC 2 cut(s) 519, 768
ZraI GACGTC 2 cut(s) 562, 760
ZrmI AGTACT 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.