Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015166

Physical Location & Seq

Genomic Coordinates Forward (+)

7508473 .. 7509887

Gene Structure 1415 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G17265.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCAAGTCTTTGTTTCCAATCTCCTTCCAAACCCATTTCCTATTTCCAACCCAAATCCAATCCATCGCCACCGTTATTCGCCAAAGTCTCCGTCTTTCGATGCAGAGCTTCCGTACAAACCCTCGTCGCCGTTGAGCCGGAGCCAGTTTTCGTCTCCGTCAAGACTTTTGCGCCAGCCACCGTCGCTAATTTGGGACCAGGGTTTGATTTCTTAGGATGTGCCGTCGATGGTCTCGGAGACCATGTGACTCTCCGTGTAGATCCCTCTGTACGAGCCGGTGAGGTCTCAATCTCGGAGATCACCGGAACCACAACAAAACTCAGCACGAACCCTCTCCGGAACTGCGCCGGAATCGCTGCTATTGCTACGATGAAGATGTTAGGGATCAGATCGGTTGGTTTATCATTAGATTTGCATAAAGGTCTTCCTTTAGGTAGCGGTTTAGGTTCTAGTGCAGCTAGTGCCGCCGCAGCTGCTGTGGCGGTTAATGAGATCTTTGGCCGGAAATTAGGGAGTGATCAATTGGTATTAGCCGGTTTAGAATCGGAAGCGAAAGTCTCCGGTTATCACGCTGATAATATCGCACCAGCGATCATGGGTGGATTCGTTTTGATTAGAAACTACGAACCACTTGATTTGAAACCATTGAGGTTCCCATCTGATAAAGATCTCTTCTTTGTTCTAGTAAGCCCTGACTTTGAAGCTCCAACTAAGAAAATGAGAGCTGCATTGCCTACAGAGATTCCAATGGTTCATCATGTTTGGAACAGTAGCCAAGCAGCTGCTTTAGTCGCTGCTGTGTTAGAAGGTGACGCAGTGATGCTTGGGAAGGCATTGTCGTCGGATAAGATTGTGGAGCCGACTAGAGCGCCGTTGATTCCGGGAATGGAAGCTGTGAAGAAGGCGGCTTTAGAAGCTGGAGCATTTGGATGTACTATTAGCGGAGCTGGACCAACAGCGGTTGCGGTGATTGATTCGGAGGAGAAGGGTCAAGTCATTGGAGAGAAGATGGTGGAAGCGTTTTGGAAAGTTGGTCATTTGAAATCTGTTGCTTCTGTGAAGAAGCTTGATAATGTTGGTGCTAGGCTTGTCAACAGCGTCTCCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004413 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006555 GO:0006566 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009069 GO:0009086 GO:0009088 GO:0009092 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019202 GO:0019752 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 ko01110 ko01120 ko01230 map00260 map01100 map01110 map01120 map01230

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

370

Amino Acids

38.53

Weight (kDa)

8.51

Isoelectric Point (pI)

34.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GHMP_kinases_N	PF00288	123 - 202	2.8e-15	GHMP kinases N terminal domain
GHMP_kinases_C	PF08544	265 - 341	4.6e-12	GHMP kinases C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17265
fragaria_vesca	FvH4_2g16830
malus_domestica	MD10G1142000.v1.1
prunus_persica	Prupe.8G180500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0280961
rosa_laevigata	RLG00000013012
rosa_multiflora	Rmu_sc0006173.1_g000036 Rmu_sc0020792.1_g000001 Rmu_sc0030424.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187450
rosa_rugosa	Rorug06G0137600
rosa_samantha	Rh6AG249600 Rh6BG251800 Rh6CG252300 Rh6DG244000
rosa_wichuraiana	Rw6G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	339
AciI	CCGC	8 cut(s)	441, 468, 471, 485, 908, 945, 962, 968
AclWI	GGATC	2 cut(s)	257, 395
AcoI	YGGCCR	1 cut(s)	502
AfaI	GTAC	3 cut(s)	117, 273, 937
AgsI	TTSAA	3 cut(s)	643, 704, 1045
AjnI	CCWGG	1 cut(s)	199
Alw26I	GTCTC	7 cut(s)	94, 160, 234, 239, 292, 565, 1108
AlwI	GGATC	2 cut(s)	257, 395
AlwNI	CAGNNNCTG	1 cut(s)	479
Aor13HI	TCCGGA	1 cut(s)	339
AoxI	GGCC	1 cut(s)	502
ApeKI	GCWGC	8 cut(s)	359, 458, 473, 476, 728, 782, 785, 797
ArsI	GACNNNNNNTTYG	2 cut(s)	78, 110
AspLEI	GCGC	3 cut(s)	175, 350, 874
AspS9I	GGNCC	2 cut(s)	197, 953
AsuC2I	CCSGG	1 cut(s)	885
AsuHPI	GGTGA	4 cut(s)	293, 295, 824, 982
AvaII	GGWCC	2 cut(s)	197, 953
BbsI	GAAGAC	1 cut(s)	419
BbvI	GCAGC	8 cut(s)	346, 463, 470, 485, 715, 772, 784, 794
BccI	CCATC	4 cut(s)	73, 224, 667, 1006
BceAI	ACGGC	3 cut(s)	116, 209, 859
BcgI	CGANNNNNNTGC	2 cut(s)	825, 859
BciT130I	CCWGG	1 cut(s)	201
BclI	TGATCA	1 cut(s)	520
BcnI	CCSGG	1 cut(s)	885
BcoDI	GTCTC	7 cut(s)	94, 160, 234, 239, 292, 565, 1108
BfaI	CTAG	5 cut(s)	453, 462, 686, 867, 1086
BfmI	CTRYAG	1 cut(s)	738
BfoI	RGCGCY	1 cut(s)	875
BglII	AGATCT	2 cut(s)	495, 670
Bme1390I	CCNGG	2 cut(s)	201, 885
Bme18I	GGWCC	2 cut(s)	197, 953
BmgT120I	GGNCC	2 cut(s)	197, 953
BmiI	GGNNCC	5 cut(s)	144, 198, 310, 656, 861
BmrFI	CCNGG	2 cut(s)	201, 885
BmsI	GCATC	2 cut(s)	92, 813
BpiI	GAAGAC	1 cut(s)	419
BpmI	CTGGAG	2 cut(s)	942, 1090
BpuMI	CCSGG	1 cut(s)	885
BsaBI	GATNNNNATC	1 cut(s)	669
BsaI	GGTCTC	3 cut(s)	234, 239, 292
BsaJI	CCNNGG	1 cut(s)	200
BsaWI	WCCGGW	3 cut(s)	305, 339, 563
BsaXI	ACNNNNNCTCC	3 cut(s)	231, 261, 1088
Bse118I	RCCGGY	2 cut(s)	278, 536
Bse1I	ACTGG	1 cut(s)	146
Bse3DI	GCAATG	1 cut(s)	731
Bse8I	GATNNNNATC	1 cut(s)	669
BseAI	TCCGGA	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	200
BseGI	GGATG	2 cut(s)	224, 938
BseJI	GATNNNNATC	1 cut(s)	669
BseMI	GCAATG	1 cut(s)	731
BseMII	CTCAG	1 cut(s)	337
BseNI	ACTGG	1 cut(s)	146
BseRI	GAGGAG	1 cut(s)	998
BseXI	GCAGC	8 cut(s)	346, 463, 470, 485, 715, 772, 784, 794
BsgI	GTGCAG	1 cut(s)	477
BshFI	GGCC	1 cut(s)	504
BsiSI	CCGG	9 cut(s)	140, 279, 306, 340, 351, 505, 537, 564, 884
BslFI	GGGAC	1 cut(s)	210
BsmAI	GTCTC	7 cut(s)	94, 160, 234, 239, 292, 565, 1108
BsmBI	CGTCTC	2 cut(s)	160, 1108
BsmFI	GGGAC	1 cut(s)	210
BsnI	GGCC	1 cut(s)	504
Bso31I	GGTCTC	3 cut(s)	234, 239, 292
Bsp13I	TCCGGA	1 cut(s)	339
Bsp143I	GATC	8 cut(s)	262, 300, 387, 392, 495, 520, 594, 670
BspACI	CCGC	8 cut(s)	441, 468, 471, 485, 908, 945, 962, 968
BspANI	GGCC	1 cut(s)	504
BspCNI	CTCAG	1 cut(s)	336
BspEI	TCCGGA	1 cut(s)	339
BspLI	GGNNCC	5 cut(s)	144, 198, 310, 656, 861
BspPI	GGATC	2 cut(s)	257, 395
BspTNI	GGTCTC	3 cut(s)	234, 239, 292
BsrDI	GCAATG	1 cut(s)	731
BsrFI	RCCGGY	2 cut(s)	278, 536
BsrI	ACTGG	1 cut(s)	146
BssAI	RCCGGY	2 cut(s)	278, 536
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	8 cut(s)	262, 300, 387, 392, 495, 520, 594, 670
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	3 cut(s)	75, 184, 773
Bst6I	CTCTTC	1 cut(s)	680
BstAPI	GCANNNNNTGC	1 cut(s)	464
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	3 cut(s)	214, 323, 714
BstF5I	GGATG	2 cut(s)	224, 938
BstH2I	RGCGCY	1 cut(s)	875
BstHHI	GCGC	3 cut(s)	175, 350, 874
BstKTI	GATC	8 cut(s)	265, 303, 390, 395, 498, 523, 597, 673
BstMAI	GTCTC	7 cut(s)	94, 160, 234, 239, 292, 565, 1108
BstMBI	GATC	8 cut(s)	262, 300, 387, 392, 495, 520, 594, 670
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	2 cut(s)	199, 883
BstSFI	CTRYAG	1 cut(s)	738
BstV1I	GCAGC	8 cut(s)	346, 463, 470, 485, 715, 772, 784, 794
BstV2I	GAAGAC	1 cut(s)	419
BstX2I	RGATCY	3 cut(s)	262, 495, 670
BstYI	RGATCY	3 cut(s)	262, 495, 670
BsuRI	GGCC	1 cut(s)	504
BtgZI	GCGATG	1 cut(s)	51
BtsCI	GGATG	2 cut(s)	224, 938
BtsI	GCAGTG	1 cut(s)	825
BtsIMutI	CAGTG	1 cut(s)	825
Cac8I	GCNNGC	1 cut(s)	177
CaiI	CAGNNNCTG	1 cut(s)	479
CfoI	GCGC	3 cut(s)	175, 350, 874
Cfr10I	RCCGGY	2 cut(s)	278, 536
Cfr13I	GGNCC	2 cut(s)	197, 953
CseI	GACGC	2 cut(s)	824, 1090
Csp6I	GTAC	3 cut(s)	116, 272, 936
CspCI	CAANNNNNGTGG	2 cut(s)	621, 656
CviAII	CATG	3 cut(s)	245, 598, 761
CviQI	GTAC	3 cut(s)	116, 272, 936
DdeI	CTNAG	3 cut(s)	214, 323, 714
DpnI	GATC	8 cut(s)	264, 302, 389, 394, 497, 522, 596, 672
DpnII	GATC	8 cut(s)	262, 300, 387, 392, 495, 520, 594, 670
EaeI	YGGCCR	1 cut(s)	502
Eam1104I	CTCTTC	1 cut(s)	680
EarI	CTCTTC	1 cut(s)	680
Eco31I	GGTCTC	3 cut(s)	234, 239, 292
Eco47I	GGWCC	2 cut(s)	197, 953
EcoRII	CCWGG	1 cut(s)	199
Esp3I	CGTCTC	2 cut(s)	160, 1108
FaeI	CATG	3 cut(s)	248, 601, 764
FaiI	YATR	4 cut(s)	246, 420, 599, 762
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	3 cut(s)	244, 597, 760
FbaI	TGATCA	1 cut(s)	520
FokI	GGATG	2 cut(s)	231, 945
FspBI	CTAG	5 cut(s)	453, 462, 686, 867, 1086
GlaI	GCGC	3 cut(s)	174, 349, 873
GsuI	CTGGAG	2 cut(s)	942, 1090
HaeII	RGCGCY	1 cut(s)	875
HaeIII	GGCC	1 cut(s)	504
HapII	CCGG	9 cut(s)	140, 279, 306, 340, 351, 505, 537, 564, 884
HgaI	GACGC	2 cut(s)	824, 1090
HhaI	GCGC	3 cut(s)	175, 350, 874
Hin1II	CATG	3 cut(s)	248, 601, 764
Hin6I	GCGC	3 cut(s)	173, 348, 872
HinP1I	GCGC	3 cut(s)	173, 348, 872
HincII	GTYRAC	1 cut(s)	1096
HindII	GTYRAC	1 cut(s)	1096
HindIII	AAGCTT	1 cut(s)	1067
HinfI	GANTC	7 cut(s)	250, 354, 545, 606, 745, 880, 977
HpaII	CCGG	9 cut(s)	140, 279, 306, 340, 351, 505, 537, 564, 884
HphI	GGTGA	4 cut(s)	293, 295, 824, 982
Hpy166II	GTNNAC	1 cut(s)	1096
Hpy188I	TCNGA	7 cut(s)	239, 298, 392, 550, 664, 847, 982
Hpy188III	TCNNGA	3 cut(s)	163, 340, 1107
Hpy8I	GTNNAC	1 cut(s)	1096
Hpy99I	CGWCG	4 cut(s)	131, 188, 230, 847
HpyAV	CCTTC	5 cut(s)	36, 803, 826, 898, 982
HpyCH4III	ACNGT	3 cut(s)	75, 184, 773
HpyCH4V	TGCA	4 cut(s)	105, 418, 458, 731
HpyF3I	CTNAG	3 cut(s)	214, 323, 714
Hsp92II	CATG	3 cut(s)	248, 601, 764
HspAI	GCGC	3 cut(s)	173, 348, 872
Kpn2I	TCCGGA	1 cut(s)	339
Ksp22I	TGATCA	1 cut(s)	520
Kzo9I	GATC	8 cut(s)	262, 300, 387, 392, 495, 520, 594, 670
LmnI	GCTCC	5 cut(s)	142, 712, 859, 923, 947
Lsp1109I	GCAGC	8 cut(s)	346, 463, 470, 485, 715, 772, 784, 794
LweI	GCATC	2 cut(s)	92, 813
MaeI	CTAG	5 cut(s)	453, 462, 686, 867, 1086
MaeIII	GTNAC	2 cut(s)	247, 812
MalI	GATC	8 cut(s)	264, 302, 389, 394, 497, 522, 596, 672
MboI	GATC	8 cut(s)	262, 300, 387, 392, 495, 520, 594, 670
MboII	GAAGA	6 cut(s)	388, 419, 667, 913, 1021, 1075
MfeI	CAATTG	1 cut(s)	524
MflI	RGATCY	3 cut(s)	262, 495, 670
MluCI	AATT	3 cut(s)	190, 509, 524
MlyI	GAGTC	1 cut(s)	244
MmeI	TCCRAC	3 cut(s)	73, 734, 825
MnlI	CCTC	6 cut(s)	134, 277, 277, 345, 645, 976
MroI	TCCGGA	1 cut(s)	339
MseI	TTAA	1 cut(s)	489
MslI	CAYNNNNRTG	1 cut(s)	931
MspA1I	CMGCKG	3 cut(s)	476, 785, 962
MspI	CCGG	9 cut(s)	140, 279, 306, 340, 351, 505, 537, 564, 884
MspR9I	CCNGG	2 cut(s)	201, 885
MunI	CAATTG	1 cut(s)	524
MvaI	CCWGG	1 cut(s)	201
NciI	CCSGG	1 cut(s)	885
NdeII	GATC	8 cut(s)	262, 300, 387, 392, 495, 520, 594, 670
NlaIII	CATG	3 cut(s)	248, 601, 764
NlaIV	GGNNCC	5 cut(s)	144, 198, 310, 656, 861
NmuCI	GTSAC	2 cut(s)	247, 812
PfeI	GAWTC	6 cut(s)	354, 545, 606, 745, 880, 977
PfoI	TCCNGGA	1 cut(s)	883
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	5 cut(s)	144, 198, 310, 656, 861
PspPI	GGNCC	2 cut(s)	197, 953
PstNI	CAGNNNCTG	1 cut(s)	479
PsuI	RGATCY	3 cut(s)	262, 495, 670
PvuII	CAGCTG	2 cut(s)	476, 785
RsaI	GTAC	3 cut(s)	117, 273, 937
RsaNI	GTAC	3 cut(s)	116, 272, 936
RseI	CAYNNNNRTG	1 cut(s)	931
SaqAI	TTAA	1 cut(s)	489
Sau3AI	GATC	8 cut(s)	262, 300, 387, 392, 495, 520, 594, 670
Sau96I	GGNCC	2 cut(s)	197, 953
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	2 cut(s)	201, 885
SfaNI	GCATC	2 cut(s)	92, 813
SfcI	CTRYAG	1 cut(s)	738
SinI	GGWCC	2 cut(s)	197, 953
SmiMI	CAYNNNNRTG	1 cut(s)	931
Sse9I	AATT	3 cut(s)	190, 509, 524
SsiI	CCGC	8 cut(s)	441, 468, 471, 485, 908, 945, 962, 968
SspMI	CTAG	5 cut(s)	453, 462, 686, 867, 1086
StyD4I	CCNGG	2 cut(s)	199, 883
TaaI	ACNGT	3 cut(s)	75, 184, 773
TaqI	TCGA	2 cut(s)	100, 228
TasI	AATT	3 cut(s)	190, 509, 524
TatI	WGTACW	1 cut(s)	935
TauI	GCSGC	3 cut(s)	470, 473, 911
TfiI	GAWTC	6 cut(s)	354, 545, 606, 745, 880, 977
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TscAI	CASTG	1 cut(s)	825
TseFI	GTSAC	2 cut(s)	247, 812
TseI	GCWGC	8 cut(s)	359, 458, 473, 476, 728, 782, 785, 797
Tsp45I	GTSAC	2 cut(s)	247, 812
TspDTI	ATGAA	2 cut(s)	389, 746
TspGWI	ACGGA	4 cut(s)	82, 103, 148, 245
TspRI	CASTG	1 cut(s)	825
VpaK11BI	GGWCC	2 cut(s)	197, 953
XspI	CTAG	5 cut(s)	453, 462, 686, 867, 1086

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.