RLG00000013012

homoserine

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
24856974 .. 24858077
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013012

Sequence Viewer

Length: 1104 bp
ATGGCCGTCTGCCACCACCAAGTTCCCTTCAAGCTCTTCACTCCGATTCCACCGGCAAACCCAAAACCCATTTTCCGATGCAACCTCTCTCTCCCATCCCGACCCACCCTCCTCACCGCCGATCCCGAACCACTCTACACCTCCGTCAAGGCCTTCGCTCCCGCCACCGTCGCCAACCTCGGCCCCGGCTTTGACTTCCTCGGATGCGCCGTCGACGGCCTCGGCGACTTCGTCTCCCTCACCGTCGACCCCCAAGTCCTTCCCGGAGAGATCTCCATTTCCGAGATCTCCGGCGACCACAGCTCCAAGAAGCTGAGCAAGAACCCCATCTGGAACTGCGCCGGGATCGCCGCCATCGAGGTCATGAAGATGCTCGGAGTCCGCTCCGTCGGCCTCTCCCTCTCTCTCCAGAAAGGCCTGCCTTTGGGAAGCGGGCTCGGATCCAGCGCGGCCAGCGCCGCCGCCGCCGCCGTCGCCGTCAACGAGATTTTCGGCGGGAAGCTGGGGTTTGAGGCTCTGGTGCACGCCGGGCTCAAATCGGAGGAGAAGGTCTCCGGTTACCACGCCGATAACATCGCTCCGGCGCTGATGGGAGGCTTTGTTCTGATTCAGAATTATGAGCCGTTGGATTTGCTCCGGTTGAGCTTCCCCTTGGATAAAGAGCTGATATTTGTACTGGTGAGCCCCGAATTCGAAGCTCCGACGAAGAAAATGAGGGCGGCGCTGCCGGCGGAGATAGGGATGGCCCACCACGTGTGGAACTCCAGCCAGGCCGGAGCGCTGGTGGCGGCGGTGCTTCAAGGTGACGTGGCGAGGCTCGGCAAGGCATTGTCGTCGGATAAGATTGTGGAGCCCAAGAGGGCTCCTCTGATTCCGGGCATGGATGCGGTGAAGAAGGCCGCCATTGAGGCTGGAGCTTTGGGCTGCACAATCAGCGGGGCCGGTCCCACTGCGGTTGCGGTGACGGACAATGCCGAAAAGGGGAAGGAAATCGGAGAGCGGATGGTGGCGGCTTTTTTGAAAGATGGGAACTTAAAAGCTGTGGCGAGTGTGAATAGGCTCGACAGAGTTGGTGCTAGGCTTGTTAGTAGCATTCCCAGATGA

Protein Analysis

368

Amino Acids

38.1

Weight (kDa)

8.21

Isoelectric Point (pI)

35.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GHMP_kinases_N PF00288 119 - 199 1.6e-15 GHMP kinases N terminal domain
GHMP_kinases_C PF08544 262 - 338 1.4e-12 GHMP kinases C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015166)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 254
AccBSI CCGCTC 2 cut(s) 384, 1000
AccI GTMKAC 2 cut(s) 213, 246
AccII CGCG 1 cut(s) 449
AclWI GGATC 4 cut(s) 116, 353, 435, 448
AcoI YGGCCR 2 cut(s) 3, 450
AcsI RAATTY 1 cut(s) 689
AcvI CACGTG 1 cut(s) 754
AdeI CACNNNGTG 1 cut(s) 754
AfaI GTAC 1 cut(s) 675
AfeI AGCGCT 1 cut(s) 780
AfiI CCNNNNNNNGG 2 cut(s) 424, 981
AflIII ACRYGT 1 cut(s) 753
AgsI TTSAA 3 cut(s) 31, 800, 1021
AjiI CACGTC 1 cut(s) 808
AjnI CCWGG 1 cut(s) 768
AloI GAACNNNNNNTCC 2 cut(s) 585, 617
AluBI AGCT 9 cut(s) 34, 303, 313, 502, 645, 664, 698, 917, 1040
AluI AGCT 9 cut(s) 34, 303, 313, 502, 645, 664, 698, 917, 1040
Alw21I GWGCWC 1 cut(s) 525
Alw26I GTCTC 2 cut(s) 238, 556
Alw44I GTGCAC 1 cut(s) 521
AlwI GGATC 4 cut(s) 116, 353, 435, 448
Aor51HI AGCGCT 1 cut(s) 780
ApaLI GTGCAC 1 cut(s) 521
ApeKI GCWGC 2 cut(s) 724, 924
ApoI RAATTY 1 cut(s) 689
AspLEI GCGC 7 cut(s) 209, 341, 449, 458, 586, 724, 781
AspS9I GGNCC 4 cut(s) 182, 745, 939, 944
AsuC2I CCSGG 5 cut(s) 186, 264, 343, 529, 876
AsuHPI GGTGA 6 cut(s) 106, 232, 691, 815, 901, 973
AsuII TTCGAA 1 cut(s) 693
AvaII GGWCC 1 cut(s) 944
BaeGI GKGCMC 1 cut(s) 525
BamHI GGATCC 1 cut(s) 440
BanII GRGCYC 5 cut(s) 438, 534, 686, 855, 865
BbrPI CACGTG 1 cut(s) 754
Bbv12I GWGCWC 1 cut(s) 525
BbvI GCAGC 2 cut(s) 711, 911
BccI CCATC 7 cut(s) 103, 335, 362, 583, 736, 997, 1019
BceAI ACGGC 5 cut(s) 194, 232, 455, 461, 607
BcgI CGANNNNNNTGC 2 cut(s) 816, 850
BciT130I CCWGG 1 cut(s) 770
BcnI CCSGG 5 cut(s) 186, 264, 343, 529, 876
BcoDI GTCTC 2 cut(s) 238, 556
BfaI CTAG 1 cut(s) 1077
BfoI RGCGCY 4 cut(s) 459, 587, 725, 782
BglI GCCNNNNNGGC 1 cut(s) 908
BglII AGATCT 2 cut(s) 270, 285
BlpI GCTNAGC 1 cut(s) 314
Bme1390I CCNGG 6 cut(s) 186, 264, 343, 529, 770, 876
Bme18I GGWCC 1 cut(s) 944
BmgBI CACGTC 1 cut(s) 808
BmgT120I GGNCC 4 cut(s) 182, 745, 939, 944
BmiI GGNNCC 6 cut(s) 184, 442, 852, 864, 940, 946
BmrFI CCNGG 6 cut(s) 186, 264, 343, 529, 770, 876
BmsI GCATC 4 cut(s) 68, 194, 360, 874
BplI GAGNNNNNCTC 4 cut(s) 536, 568, 850, 882
BpmI CTGGAG 3 cut(s) 392, 748, 933
Bpu1102I GCTNAGC 1 cut(s) 314
Bpu14I TTCGAA 1 cut(s) 693
BpuMI CCSGG 5 cut(s) 186, 264, 343, 529, 876
BsaAI YACGTR 1 cut(s) 754
BsaI GGTCTC 1 cut(s) 556
BsaJI CCNNGG 5 cut(s) 178, 184, 199, 220, 651
BsaWI WCCGGW 2 cut(s) 554, 636
Bsc4I CCNNNNNNNGG 2 cut(s) 424, 981
Bse118I RCCGGY 3 cut(s) 52, 727, 941
Bse1I ACTGG 1 cut(s) 681
BseBI CCWGG 1 cut(s) 770
BseDI CCNNGG 5 cut(s) 178, 184, 199, 220, 651
BseGI GGATG 5 cut(s) 95, 209, 747, 889, 1008
BseLI CCNNNNNNNGG 2 cut(s) 424, 981
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 1 cut(s) 681
BseRI GAGGAG 3 cut(s) 101, 557, 855
BseSI GKGCMC 1 cut(s) 525
BseXI GCAGC 2 cut(s) 711, 911
BseYI CCCAGC 1 cut(s) 502
BsgI GTGCAG 1 cut(s) 910
Bsh1236I CGCG 1 cut(s) 449
BsiHKAI GWGCWC 1 cut(s) 525
BslFI GGGAC 1 cut(s) 930
BslI CCNNNNNNNGG 2 cut(s) 424, 981
BsmAI GTCTC 2 cut(s) 238, 556
BsmBI CGTCTC 1 cut(s) 238
BsmFI GGGAC 1 cut(s) 930
BsmI GAATGC 1 cut(s) 1092
Bso31I GGTCTC 1 cut(s) 556
Bsp119I TTCGAA 1 cut(s) 693
Bsp1286I GDGCHC 6 cut(s) 438, 525, 534, 686, 855, 865
Bsp143I GATC 5 cut(s) 121, 270, 285, 345, 440
Bsp1720I GCTNAGC 1 cut(s) 314
BspCNI CTCAG 1 cut(s) 306
BspFNI CGCG 1 cut(s) 449
BspHI TCATGA 1 cut(s) 363
BspLI GGNNCC 6 cut(s) 184, 442, 852, 864, 940, 946
BspPI GGATC 4 cut(s) 116, 353, 435, 448
BspQI GCTCTTC 1 cut(s) 41
BspT104I TTCGAA 1 cut(s) 693
BspTNI GGTCTC 1 cut(s) 556
BsrBI CCGCTC 2 cut(s) 384, 1000
BsrFI RCCGGY 3 cut(s) 52, 727, 941
BsrI ACTGG 1 cut(s) 681
BssAI RCCGGY 3 cut(s) 52, 727, 941
BssECI CCNNGG 5 cut(s) 178, 184, 199, 220, 651
BssMI GATC 5 cut(s) 121, 270, 285, 345, 440
BssT1I CCWWGG 1 cut(s) 651
Bst2UI CCWGG 1 cut(s) 770
Bst4CI ACNGT 2 cut(s) 169, 244
Bst6I CTCTTC 1 cut(s) 41
BstBAI YACGTR 1 cut(s) 754
BstBI TTCGAA 1 cut(s) 693
BstC8I GCNNGC 5 cut(s) 419, 434, 454, 525, 729
BstDEI CTNAG 1 cut(s) 314
BstEII GGTNACC 1 cut(s) 557
BstF5I GGATG 5 cut(s) 95, 209, 747, 889, 1008
BstFNI CGCG 1 cut(s) 449
BstH2I RGCGCY 4 cut(s) 459, 587, 725, 782
BstHHI GCGC 7 cut(s) 209, 341, 449, 458, 586, 724, 781
BstKTI GATC 5 cut(s) 124, 273, 288, 348, 443
BstMAI GTCTC 2 cut(s) 238, 556
BstMBI GATC 5 cut(s) 121, 270, 285, 345, 440
BstNI CCWGG 1 cut(s) 770
BstPI GGTNACC 1 cut(s) 557
BstSCI CCNGG 6 cut(s) 184, 262, 341, 527, 768, 874
BstSLI GKGCMC 1 cut(s) 525
BstUI CGCG 1 cut(s) 449
BstV1I GCAGC 2 cut(s) 711, 911
BstX2I RGATCY 3 cut(s) 270, 285, 440
BstYI RGATCY 3 cut(s) 270, 285, 440
BtgZI GCGATG 1 cut(s) 559
BtrI CACGTC 1 cut(s) 808
BtsCI GGATG 5 cut(s) 95, 209, 747, 889, 1008
BtsI GCAGTG 1 cut(s) 948
BtsIMutI CAGTG 1 cut(s) 948
Cac8I GCNNGC 5 cut(s) 419, 434, 454, 525, 729
CciI TCATGA 1 cut(s) 363
CfoI GCGC 7 cut(s) 209, 341, 449, 458, 586, 724, 781
Cfr10I RCCGGY 3 cut(s) 52, 727, 941
Cfr13I GGNCC 4 cut(s) 182, 745, 939, 944
Csp6I GTAC 1 cut(s) 674
CspCI CAANNNNNGTGG 2 cut(s) 937, 972
CviAII CATG 2 cut(s) 364, 880
CviQI GTAC 1 cut(s) 674
DdeI CTNAG 1 cut(s) 314
DpnI GATC 5 cut(s) 123, 272, 287, 347, 442
DpnII GATC 5 cut(s) 121, 270, 285, 345, 440
DraIII CACNNNGTG 1 cut(s) 754
DrdI GACNNNNNNGTC 1 cut(s) 254
DseDI GACNNNNNNGTC 1 cut(s) 254
EaeI YGGCCR 2 cut(s) 3, 450
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
EciI GGCGGA 1 cut(s) 746
Eco130I CCWWGG 1 cut(s) 651
Eco147I AGGCCT 2 cut(s) 152, 417
Eco24I GRGCYC 5 cut(s) 438, 534, 686, 855, 865
Eco31I GGTCTC 1 cut(s) 556
Eco47I GGWCC 1 cut(s) 944
Eco47III AGCGCT 1 cut(s) 780
Eco72I CACGTG 1 cut(s) 754
Eco91I GGTNACC 1 cut(s) 557
EcoO65I GGTNACC 1 cut(s) 557
EcoRI GAATTC 1 cut(s) 689
EcoRII CCWGG 1 cut(s) 768
EcoT14I CCWWGG 1 cut(s) 651
EcoT38I GRGCYC 5 cut(s) 438, 534, 686, 855, 865
ErhI CCWWGG 1 cut(s) 651
Esp3I CGTCTC 1 cut(s) 238
FaeI CATG 2 cut(s) 367, 883
FaiI YATR 3 cut(s) 365, 618, 881
FaqI GGGAC 1 cut(s) 930
FatI CATG 2 cut(s) 363, 879
FauI CCCGC 4 cut(s) 169, 425, 488, 929
FblI GTMKAC 2 cut(s) 213, 246
FokI GGATG 5 cut(s) 82, 216, 754, 896, 1015
FriOI GRGCYC 5 cut(s) 438, 534, 686, 855, 865
FspBI CTAG 1 cut(s) 1077
GlaI GCGC 7 cut(s) 208, 340, 448, 457, 585, 723, 780
GsaI CCCAGC 1 cut(s) 506
GsuI CTGGAG 3 cut(s) 392, 748, 933
HaeII RGCGCY 4 cut(s) 459, 587, 725, 782
HhaI GCGC 7 cut(s) 209, 341, 449, 458, 586, 724, 781
Hin1II CATG 2 cut(s) 367, 883
Hin6I GCGC 7 cut(s) 207, 339, 447, 456, 584, 722, 779
HinP1I GCGC 7 cut(s) 207, 339, 447, 456, 584, 722, 779
HincII GTYRAC 3 cut(s) 214, 247, 481
HindII GTYRAC 3 cut(s) 214, 247, 481
HinfI GANTC 4 cut(s) 46, 378, 607, 871
HphI GGTGA 6 cut(s) 106, 232, 691, 815, 901, 973
Hpy166II GTNNAC 4 cut(s) 214, 247, 481, 523
Hpy188III TCNNGA 5 cut(s) 99, 125, 331, 364, 409
Hpy8I GTNNAC 4 cut(s) 214, 247, 481, 523
Hpy99I CGWCG 8 cut(s) 173, 215, 218, 248, 392, 476, 706, 838
HpyAV CCTTC 6 cut(s) 37, 163, 269, 541, 889, 979
HpyCH4III ACNGT 2 cut(s) 169, 244
HpyCH4IV ACGT 2 cut(s) 753, 807
HpyCH4V TGCA 3 cut(s) 81, 523, 927
HpyF3I CTNAG 1 cut(s) 314
HpySE526I ACGT 2 cut(s) 753, 807
Hsp92II CATG 2 cut(s) 367, 883
HspAI GCGC 7 cut(s) 207, 339, 447, 456, 584, 722, 779
KroI GCCGGC 1 cut(s) 727
KroNI GCCGGC 1 cut(s) 729
Kzo9I GATC 5 cut(s) 121, 270, 285, 345, 440
LguI GCTCTTC 1 cut(s) 41
Lsp1109I GCAGC 2 cut(s) 711, 911
LweI GCATC 4 cut(s) 68, 194, 360, 874
MaeI CTAG 1 cut(s) 1077
MaeII ACGT 2 cut(s) 753, 807
MaeIII GTNAC 3 cut(s) 557, 803, 961
MalI GATC 5 cut(s) 123, 272, 287, 347, 442
MbiI CCGCTC 2 cut(s) 384, 1000
MboI GATC 5 cut(s) 121, 270, 285, 345, 440
MboII GAAGA 4 cut(s) 28, 379, 718, 904
MflI RGATCY 3 cut(s) 270, 285, 440
MhlI GDGCHC 6 cut(s) 438, 525, 534, 686, 855, 865
MluCI AATT 2 cut(s) 613, 689
MlyI GAGTC 1 cut(s) 387
MmeI TCCRAC 3 cut(s) 606, 725, 816
MroNI GCCGGC 1 cut(s) 727
MseI TTAA 1 cut(s) 1034
MslI CAYNNNNRTG 1 cut(s) 368
MspA1I CMGCKG 1 cut(s) 936
MspR9I CCNGG 6 cut(s) 186, 264, 343, 529, 770, 876
Mva1269I GAATGC 1 cut(s) 1092
MvaI CCWGG 1 cut(s) 770
MvnI CGCG 1 cut(s) 449
NaeI GCCGGC 1 cut(s) 729
NciI CCSGG 5 cut(s) 186, 264, 343, 529, 876
NdeII GATC 5 cut(s) 121, 270, 285, 345, 440
NgoMIV GCCGGC 1 cut(s) 727
NlaIII CATG 2 cut(s) 367, 883
NlaIV GGNNCC 6 cut(s) 184, 442, 852, 864, 940, 946
NmeAIII GCCGAG 3 cut(s) 159, 201, 798
NmuCI GTSAC 2 cut(s) 803, 961
NspV TTCGAA 1 cut(s) 693
PagI TCATGA 1 cut(s) 363
PceI AGGCCT 2 cut(s) 152, 417
PciSI GCTCTTC 1 cut(s) 41
PcsI WCGNNNNNNNCGW 5 cut(s) 207, 222, 228, 354, 480
PctI GAATGC 1 cut(s) 1092
PdiI GCCGGC 1 cut(s) 729
PfeI GAWTC 3 cut(s) 46, 607, 871
PflFI GACNNNGTC 1 cut(s) 230
PfoI TCCNGGA 1 cut(s) 262
PleI GAGTC 1 cut(s) 386
PmaCI CACGTG 1 cut(s) 754
PmlI CACGTG 1 cut(s) 754
PpsI GAGTC 1 cut(s) 386
Ppu21I YACGTR 1 cut(s) 754
Psp6I CCWGG 1 cut(s) 768
PspCI CACGTG 1 cut(s) 754
PspEI GGTNACC 1 cut(s) 557
PspFI CCCAGC 1 cut(s) 502
PspGI CCWGG 1 cut(s) 768
PspN4I GGNNCC 6 cut(s) 184, 442, 852, 864, 940, 946
PspPI GGNCC 4 cut(s) 182, 745, 939, 944
PsuI RGATCY 3 cut(s) 270, 285, 440
PsyI GACNNNGTC 1 cut(s) 230
RsaI GTAC 1 cut(s) 675
RsaNI GTAC 1 cut(s) 674
RseI CAYNNNNRTG 1 cut(s) 368
SalI GTCGAC 2 cut(s) 212, 245
SapI GCTCTTC 1 cut(s) 41
SaqAI TTAA 1 cut(s) 1034
Sau3AI GATC 5 cut(s) 121, 270, 285, 345, 440
Sau96I GGNCC 4 cut(s) 182, 745, 939, 944
SchI GAGTC 1 cut(s) 387
ScrFI CCNGG 6 cut(s) 186, 264, 343, 529, 770, 876
SduI GDGCHC 6 cut(s) 438, 525, 534, 686, 855, 865
SfaNI GCATC 4 cut(s) 68, 194, 360, 874
SfuI TTCGAA 1 cut(s) 693
SgrDI CGTCGACG 1 cut(s) 212
SinI GGWCC 1 cut(s) 944
SmiMI CAYNNNNRTG 1 cut(s) 368
Sse9I AATT 2 cut(s) 613, 689
SseBI AGGCCT 2 cut(s) 152, 417
SspMI CTAG 1 cut(s) 1077
StuI AGGCCT 2 cut(s) 152, 417
StyD4I CCNGG 6 cut(s) 184, 262, 341, 527, 768, 874
StyI CCWWGG 1 cut(s) 651
TaaI ACNGT 2 cut(s) 169, 244
TaiI ACGT 2 cut(s) 756, 810
TaqI TCGA 5 cut(s) 213, 246, 357, 693, 1062
TasI AATT 2 cut(s) 613, 689
TatI WGTACW 1 cut(s) 673
TfiI GAWTC 3 cut(s) 46, 607, 871
Tru1I TTAA 1 cut(s) 1034
Tru9I TTAA 1 cut(s) 1034
TscAI CASTG 1 cut(s) 955
TseFI GTSAC 2 cut(s) 803, 961
TseI GCWGC 2 cut(s) 724, 924
Tsp45I GTSAC 2 cut(s) 803, 961
TspDTI ATGAA 1 cut(s) 380
TspGWI ACGGA 3 cut(s) 133, 376, 980
TspRI CASTG 1 cut(s) 955
Tth111I GACNNNGTC 1 cut(s) 230
VneI GTGCAC 1 cut(s) 521
VpaK11BI GGWCC 1 cut(s) 944
XapI RAATTY 1 cut(s) 689
XmiI GTMKAC 2 cut(s) 213, 246
XspI CTAG 1 cut(s) 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.