Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006173.1

Orthogroup ID

OG0015166

Physical Location & Seq

Genomic Coordinates Forward (+)

149292 .. 153237

Gene Structure 3946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006173.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

atgctcaatcaaggaattatctggaaatctggaatgaaccaaaactattttagaccaacagatgccgtcagtttagcagtgacattgaccaggttcaacgcacataagacagggaagcctacattgccgcagccctgctcccagcccacgctgcccttgcaacgcactttccagcgtaccgtgtcgcagctctacccccgcgctgtccctacagcctcctgcgcactagtatgcctgctgccaccgcagcccccgtgtgacatctgcagctctgcagcctacccctcgtgccattcgtccgccagccagccagccttcctcacgcactcgctgcctcgctgctgccccgcaccacacacactctactgccctgctgttgccccttgttgctactgctccctaacacgcctgcatcaacatgcgcgtgaattcagccccgccaccgttgccaacctcggccccggctttgacttcctcggatgctccgttgacggcctcggcgacttcgtctccctcaccgttgatccccaagtcctccacggagagatatccatttccgagatctctggcgaccacaactccaagctgagcaagaaccccatctggaactgcgccgggatcgccgccattgaggtcatgaagatgctaggcgtccgctccgtcggcctctccccctctctccagaaaggcctgcctttgggaagcgggctcagatccagtgcggccagcgccgtggcagccgccgtagctgtcaacgagattttcggcgggaagctgggggttgaagcactggtacacgcggggctcaaatcggaggagaaggtctccggttatcacgccgatctcatctttacagccttgacccaacgaccgagaattcttctcagtccgactccgacagctcacctcgtcgacctcatcattctccaagccgcctccgacctgaccccgtgttcccctacctcgctccctgaccccaagtccccgatctcgttctccagacctctagacctcgagcttcatctgcactcccagtccgatcgattgatctgtttgcctctttctctcgccagtcgcactgaacccagtccaaatcgctctctctccgctcgaatcaacaaatttctcgcactctcctcgcacagaaattcaaaaccaaagagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004413 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006555 GO:0006566 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009069 GO:0009086 GO:0009088 GO:0009092 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019202 GO:0019752 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko01100 ko01110 ko01120 ko01230 map00260 map01100 map01110 map01120 map01230

Pfam Domains

Protein Families

GHMP_kinases_C GHMP_kinases_N

Protein Analysis

388

Amino Acids

41.4

Weight (kDa)

8.94

Isoelectric Point (pI)

52.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17265
fragaria_vesca	FvH4_2g16830
malus_domestica	MD10G1142000.v1.1
prunus_persica	Prupe.8G180500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0280961
rosa_laevigata	RLG00000013012
rosa_multiflora	Rmu_sc0006173.1_g000036 Rmu_sc0020792.1_g000001 Rmu_sc0030424.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187450
rosa_rugosa	Rorug06G0137600
rosa_samantha	Rh6AG249600 Rh6BG251800 Rh6CG252300 Rh6DG244000
rosa_wichuraiana	Rw6G021590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	223
AccBSI	CCGCTC	2 cut(s)	657, 1109
AccI	GTMKAC	1 cut(s)	912
AccII	CGCG	3 cut(s)	201, 424, 800
AclWI	GGATC	3 cut(s)	518, 626, 708
AcoI	YGGCCR	1 cut(s)	723
AcsI	RAATTY	4 cut(s)	428, 876, 1121, 1147
AcyI	GRCGYC	1 cut(s)	651
AfaI	GTAC	2 cut(s)	178, 795
AfiI	CCNNNNNNNGG	1 cut(s)	697
AgsI	TTSAA	3 cut(s)	97, 785, 1152
AhdI	GACNNNNNGTC	1 cut(s)	979
AhlI	ACTAGT	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	89
AluBI	AGCT	7 cut(s)	190, 270, 586, 749, 775, 902, 1018
AluI	AGCT	7 cut(s)	190, 270, 586, 749, 775, 902, 1018
Alw26I	GTCTC	2 cut(s)	514, 829
AlwI	GGATC	3 cut(s)	518, 626, 708
Ama87I	CYCGRG	1 cut(s)	1013
AoxI	GGCC	5 cut(s)	457, 493, 664, 688, 723
ApoI	RAATTY	4 cut(s)	428, 876, 1121, 1147
AspLEI	GCGC	5 cut(s)	203, 224, 424, 614, 731
AspS9I	GGNCC	1 cut(s)	458
AsuC2I	CCSGG	2 cut(s)	462, 616
AsuHPI	GGTGA	2 cut(s)	508, 896
AvaI	CYCGRG	1 cut(s)	1013
BanII	GRGCYC	2 cut(s)	711, 807
BarI	GAAGNNNNNNTAC	2 cut(s)	777, 809
BauI	CACGAG	1 cut(s)	286
BccI	CCATC	1 cut(s)	608
BceAI	ACGGC	4 cut(s)	50, 508, 716, 728
BcgI	CGANNNNNNTGC	2 cut(s)	1119, 1153
BciT130I	CCWGG	1 cut(s)	91
BcnI	CCSGG	2 cut(s)	462, 616
BcoDI	GTCTC	2 cut(s)	514, 829
BcuI	ACTAGT	1 cut(s)	226
BfaI	CTAG	3 cut(s)	227, 647, 1007
BfmI	CTRYAG	3 cut(s)	210, 265, 273
BfoI	RGCGCY	1 cut(s)	732
BglII	AGATCT	1 cut(s)	561
BlpI	GCTNAGC	1 cut(s)	587
Bme1390I	CCNGG	3 cut(s)	91, 462, 616
BmeRI	GACNNNNNGTC	1 cut(s)	979
BmeT110I	CYCGRG	1 cut(s)	1013
BmgT120I	GGNCC	1 cut(s)	458
BmiI	GGNNCC	1 cut(s)	460
BmrFI	CCNGG	3 cut(s)	91, 462, 616
BmrI	ACTGGG	2 cut(s)	1027, 1080
BmsI	GCATC	4 cut(s)	52, 421, 470, 633
BmuI	ACTGGG	2 cut(s)	1027, 1080
BplI	GAGNNNNNCTC	2 cut(s)	809, 841
BpmI	CTGGAG	2 cut(s)	665, 982
Bpu1102I	GCTNAGC	1 cut(s)	587
BpuMI	CCSGG	2 cut(s)	462, 616
Bsa29I	ATCGAT	1 cut(s)	1042
BsaHI	GRCGYC	1 cut(s)	651
BsaI	GGTCTC	1 cut(s)	829
BsaJI	CCNNGG	6 cut(s)	454, 460, 475, 496, 538, 732
BsaWI	WCCGGW	1 cut(s)	827
BsaXI	ACNNNNNCTCC	4 cut(s)	494, 524, 563, 593
Bsc4I	CCNNNNNNNGG	1 cut(s)	697
Bse1I	ACTGG	5 cut(s)	717, 795, 1033, 1071, 1086
Bse3DI	GCAATG	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	91
BseCI	ATCGAT	1 cut(s)	1042
BseDI	CCNNGG	6 cut(s)	454, 460, 475, 496, 538, 732
BseGI	GGATG	1 cut(s)	485
BseLI	CCNNNNNNNGG	1 cut(s)	697
BseMI	GCAATG	1 cut(s)	122
BseMII	CTCAG	3 cut(s)	578, 724, 898
BseNI	ACTGG	5 cut(s)	717, 795, 1033, 1071, 1086
BseRI	GAGGAG	2 cut(s)	830, 1126
BseYI	CCCAGC	2 cut(s)	141, 775
BsgI	GTGCAG	1 cut(s)	1010
Bsh1236I	CGCG	3 cut(s)	201, 424, 800
Bsh1285I	CGRYCG	2 cut(s)	872, 1042
BshFI	GGCC	5 cut(s)	459, 495, 666, 690, 725
BshVI	ATCGAT	1 cut(s)	1042
BsiEI	CGRYCG	2 cut(s)	872, 1042
BsiHKCI	CYCGRG	1 cut(s)	1013
BsiSI	CCGG	3 cut(s)	462, 615, 828
BslFI	GGGAC	2 cut(s)	191, 967
BslI	CCNNNNNNNGG	1 cut(s)	697
BsmAI	GTCTC	2 cut(s)	514, 829
BsmBI	CGTCTC	1 cut(s)	514
BsmFI	GGGAC	2 cut(s)	191, 967
BsnI	GGCC	5 cut(s)	459, 495, 666, 690, 725
Bso31I	GGTCTC	1 cut(s)	829
BsoBI	CYCGRG	1 cut(s)	1013
Bsp1286I	GDGCHC	2 cut(s)	711, 807
Bsp143I	GATC	8 cut(s)	523, 561, 618, 713, 841, 987, 1039, 1047
Bsp1720I	GCTNAGC	1 cut(s)	587
BspANI	GGCC	5 cut(s)	459, 495, 666, 690, 725
BspCNI	CTCAG	3 cut(s)	579, 723, 897
BspDI	ATCGAT	1 cut(s)	1042
BspFNI	CGCG	3 cut(s)	201, 424, 800
BspHI	TCATGA	1 cut(s)	636
BspLI	GGNNCC	1 cut(s)	460
BspMAI	CTGCAG	2 cut(s)	269, 277
BspPI	GGATC	3 cut(s)	518, 626, 708
BspTNI	GGTCTC	1 cut(s)	829
BsrBI	CCGCTC	2 cut(s)	657, 1109
BsrDI	GCAATG	1 cut(s)	122
BsrI	ACTGG	5 cut(s)	717, 795, 1033, 1071, 1086
BssECI	CCNNGG	6 cut(s)	454, 460, 475, 496, 538, 732
BssMI	GATC	8 cut(s)	523, 561, 618, 713, 841, 987, 1039, 1047
BssNI	GRCGYC	1 cut(s)	651
BssSI	CACGAG	1 cut(s)	286
Bst2BI	CACGAG	1 cut(s)	286
Bst2UI	CCWGG	1 cut(s)	91
Bst4CI	ACNGT	3 cut(s)	181, 445, 520
BstACI	GRCGYC	1 cut(s)	651
BstAPI	GCANNNNNTGC	1 cut(s)	331
BstC8I	GCNNGC	8 cut(s)	236, 304, 308, 312, 410, 692, 707, 727
BstDEI	CTNAG	3 cut(s)	587, 710, 884
BstDSI	CCRYGG	2 cut(s)	538, 732
BstF5I	GGATG	1 cut(s)	485
BstFNI	CGCG	3 cut(s)	201, 424, 800
BstH2I	RGCGCY	1 cut(s)	732
BstHHI	GCGC	5 cut(s)	203, 224, 424, 614, 731
BstKTI	GATC	8 cut(s)	526, 564, 621, 716, 844, 990, 1042, 1050
BstMAI	GTCTC	2 cut(s)	514, 829
BstMBI	GATC	8 cut(s)	523, 561, 618, 713, 841, 987, 1039, 1047
BstMCI	CGRYCG	2 cut(s)	872, 1042
BstNI	CCWGG	1 cut(s)	91
BstNSI	RCATGY	1 cut(s)	422
BstSCI	CCNGG	3 cut(s)	89, 460, 614
BstSFI	CTRYAG	3 cut(s)	210, 265, 273
BstUI	CGCG	3 cut(s)	201, 424, 800
BstX2I	RGATCY	2 cut(s)	561, 713
BstXI	CCANNNNNNTGG	1 cut(s)	733
BstYI	RGATCY	2 cut(s)	561, 713
Bsu15I	ATCGAT	1 cut(s)	1042
BsuRI	GGCC	5 cut(s)	459, 495, 666, 690, 725
BsuTUI	ATCGAT	1 cut(s)	1042
BtgI	CCRYGG	2 cut(s)	538, 732
BtsCI	GGATG	1 cut(s)	485
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	4 cut(s)	84, 724, 788, 1077
Cac8I	GCNNGC	8 cut(s)	236, 304, 308, 312, 410, 692, 707, 727
CciI	TCATGA	1 cut(s)	636
CfoI	GCGC	5 cut(s)	203, 224, 424, 614, 731
Cfr13I	GGNCC	1 cut(s)	458
ClaI	ATCGAT	1 cut(s)	1042
CseI	GACGC	1 cut(s)	640
CsiI	ACCWGGT	1 cut(s)	89
Csp6I	GTAC	2 cut(s)	177, 794
CviAII	CATG	2 cut(s)	419, 637
CviQI	GTAC	2 cut(s)	177, 794
DdeI	CTNAG	3 cut(s)	587, 710, 884
DpnI	GATC	8 cut(s)	525, 563, 620, 715, 843, 989, 1041, 1049
DpnII	GATC	8 cut(s)	523, 561, 618, 713, 841, 987, 1039, 1047
DriI	GACNNNNNGTC	1 cut(s)	979
EaeI	YGGCCR	1 cut(s)	723
Eam1105I	GACNNNNNGTC	1 cut(s)	979
EciI	GGCGGA	1 cut(s)	289
Eco147I	AGGCCT	1 cut(s)	690
Eco24I	GRGCYC	2 cut(s)	711, 807
Eco31I	GGTCTC	1 cut(s)	829
Eco32I	GATATC	1 cut(s)	549
Eco88I	CYCGRG	1 cut(s)	1013
EcoRI	GAATTC	2 cut(s)	428, 876
EcoRII	CCWGG	1 cut(s)	89
EcoRV	GATATC	1 cut(s)	549
EcoT38I	GRGCYC	2 cut(s)	711, 807
Esp3I	CGTCTC	1 cut(s)	514
FaeI	CATG	2 cut(s)	422, 640
FaiI	YATR	4 cut(s)	105, 232, 420, 638
FaqI	GGGAC	2 cut(s)	191, 967
FatI	CATG	2 cut(s)	418, 636
FauI	CCCGC	6 cut(s)	206, 355, 445, 698, 761, 793
FblI	GTMKAC	1 cut(s)	912
FokI	GGATG	1 cut(s)	492
FriOI	GRGCYC	2 cut(s)	711, 807
FspBI	CTAG	3 cut(s)	227, 647, 1007
FspI	TGCGCA	1 cut(s)	223
GlaI	GCGC	5 cut(s)	202, 223, 423, 613, 730
GsaI	CCCAGC	2 cut(s)	145, 779
GsuI	CTGGAG	2 cut(s)	665, 982
HaeII	RGCGCY	1 cut(s)	732
HaeIII	GGCC	5 cut(s)	459, 495, 666, 690, 725
HapII	CCGG	3 cut(s)	462, 615, 828
HgaI	GACGC	1 cut(s)	640
HhaI	GCGC	5 cut(s)	203, 224, 424, 614, 731
Hin1I	GRCGYC	1 cut(s)	651
Hin1II	CATG	2 cut(s)	422, 640
Hin6I	GCGC	5 cut(s)	201, 222, 422, 612, 729
HinP1I	GCGC	5 cut(s)	201, 222, 422, 612, 729
HincII	GTYRAC	3 cut(s)	490, 754, 913
HindII	GTYRAC	3 cut(s)	490, 754, 913
HinfI	GANTC	2 cut(s)	892, 1113
HpaII	CCGG	3 cut(s)	462, 615, 828
HphI	GGTGA	2 cut(s)	508, 896
Hpy166II	GTNNAC	4 cut(s)	490, 754, 796, 913
Hpy188I	TCNGA	8 cut(s)	479, 559, 713, 814, 891, 897, 940, 1039
Hpy188III	TCNNGA	7 cut(s)	22, 30, 604, 637, 682, 999, 1007
Hpy8I	GTNNAC	4 cut(s)	490, 754, 796, 913
Hpy99I	CGWCG	2 cut(s)	665, 914
HpyAV	CCTTC	2 cut(s)	325, 814
HpyCH4III	ACNGT	3 cut(s)	181, 445, 520
HpyCH4V	TGCA	5 cut(s)	160, 267, 275, 412, 1027
HpyF3I	CTNAG	3 cut(s)	587, 710, 884
Hsp92I	GRCGYC	1 cut(s)	651
Hsp92II	CATG	2 cut(s)	422, 640
HspAI	GCGC	5 cut(s)	201, 222, 422, 612, 729
Kzo9I	GATC	8 cut(s)	523, 561, 618, 713, 841, 987, 1039, 1047
LmnI	GCTCC	5 cut(s)	143, 401, 488, 662, 972
LweI	GCATC	4 cut(s)	52, 421, 470, 633
MabI	ACCWGGT	1 cut(s)	89
MaeI	CTAG	3 cut(s)	227, 647, 1007
MaeIII	GTNAC	2 cut(s)	79, 257
MalI	GATC	8 cut(s)	525, 563, 620, 715, 843, 989, 1041, 1049
MbiI	CCGCTC	2 cut(s)	657, 1109
MboI	GATC	8 cut(s)	523, 561, 618, 713, 841, 987, 1039, 1047
MboII	GAAGA	2 cut(s)	652, 872
MflI	RGATCY	2 cut(s)	561, 713
MhlI	GDGCHC	2 cut(s)	711, 807
MluCI	AATT	5 cut(s)	15, 428, 876, 1121, 1147
MlyI	GAGTC	1 cut(s)	886
MmeI	TCCRAC	3 cut(s)	914, 920, 963
MslI	CAYNNNNRTG	4 cut(s)	229, 417, 423, 641
MspI	CCGG	3 cut(s)	462, 615, 828
MspR9I	CCNGG	3 cut(s)	91, 462, 616
MvaI	CCWGG	1 cut(s)	91
MvnI	CGCG	3 cut(s)	201, 424, 800
NciI	CCSGG	2 cut(s)	462, 616
NdeII	GATC	8 cut(s)	523, 561, 618, 713, 841, 987, 1039, 1047
NlaIII	CATG	2 cut(s)	422, 640
NlaIV	GGNNCC	1 cut(s)	460
NmeAIII	GCCGAG	2 cut(s)	435, 477
NmuCI	GTSAC	2 cut(s)	79, 257
NsbI	TGCGCA	1 cut(s)	223
NspI	RCATGY	1 cut(s)	422
PaeR7I	CTCGAG	1 cut(s)	1013
PagI	TCATGA	1 cut(s)	636
PceI	AGGCCT	1 cut(s)	690
PcsI	WCGNNNNNNNCGW	4 cut(s)	293, 483, 498, 504
PfeI	GAWTC	1 cut(s)	1113
PflFI	GACNNNGTC	1 cut(s)	506
Ple19I	CGATCG	1 cut(s)	1042
PleI	GAGTC	1 cut(s)	886
PpsI	GAGTC	1 cut(s)	886
Psp6I	CCWGG	1 cut(s)	89
PspFI	CCCAGC	2 cut(s)	141, 775
PspGI	CCWGG	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	460
PspPI	GGNCC	1 cut(s)	458
PspXI	VCTCGAGB	1 cut(s)	1013
PstI	CTGCAG	2 cut(s)	269, 277
PsuI	RGATCY	2 cut(s)	561, 713
PsyI	GACNNNGTC	1 cut(s)	506
PvuI	CGATCG	1 cut(s)	1042
RsaI	GTAC	2 cut(s)	178, 795
RsaNI	GTAC	2 cut(s)	177, 794
RseI	CAYNNNNRTG	4 cut(s)	229, 417, 423, 641
SalI	GTCGAC	1 cut(s)	911
Sau3AI	GATC	8 cut(s)	523, 561, 618, 713, 841, 987, 1039, 1047
Sau96I	GGNCC	1 cut(s)	458
SchI	GAGTC	1 cut(s)	886
ScrFI	CCNGG	3 cut(s)	91, 462, 616
SduI	GDGCHC	2 cut(s)	711, 807
SexAI	ACCWGGT	1 cut(s)	89
SfaNI	GCATC	4 cut(s)	52, 421, 470, 633
SfcI	CTRYAG	3 cut(s)	210, 265, 273
Sfr274I	CTCGAG	1 cut(s)	1013
SlaI	CTCGAG	1 cut(s)	1013
SmiMI	CAYNNNNRTG	4 cut(s)	229, 417, 423, 641
SmlI	CTYRAG	1 cut(s)	1013
SmoI	CTYRAG	1 cut(s)	1013
SpeI	ACTAGT	1 cut(s)	226
Sse9I	AATT	5 cut(s)	15, 428, 876, 1121, 1147
SseBI	AGGCCT	1 cut(s)	690
SspMI	CTAG	3 cut(s)	227, 647, 1007
StuI	AGGCCT	1 cut(s)	690
StyD4I	CCNGG	3 cut(s)	89, 460, 614
TaaI	ACNGT	3 cut(s)	181, 445, 520
TaqI	TCGA	4 cut(s)	912, 1014, 1042, 1111
TaqII	GACCGA	1 cut(s)	886
TasI	AATT	5 cut(s)	15, 428, 876, 1121, 1147
TauI	GCSGC	5 cut(s)	130, 626, 725, 743, 935
TfiI	GAWTC	1 cut(s)	1113
TscAI	CASTG	4 cut(s)	84, 724, 795, 1084
TseFI	GTSAC	2 cut(s)	79, 257
Tsp45I	GTSAC	2 cut(s)	79, 257
TspDTI	ATGAA	3 cut(s)	50, 653, 1010
TspGWI	ACGGA	3 cut(s)	475, 555, 649
TspRI	CASTG	4 cut(s)	84, 724, 795, 1084
Tth111I	GACNNNGTC	1 cut(s)	506
XapI	RAATTY	4 cut(s)	428, 876, 1121, 1147
XbaI	TCTAGA	1 cut(s)	1006
XceI	RCATGY	1 cut(s)	422
XhoI	CTCGAG	1 cut(s)	1013
XmiI	GTMKAC	1 cut(s)	912
XspI	CTAG	3 cut(s)	227, 647, 1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.